}
if (is_file($autoload = __DIR__ . '/../vendor/autoload.php')) {
require $autoload;
} elseif (is_file($autoload = __DIR__ . '/../../../autoload.php')) {
require $autoload;
} else {
fwrite(STDERR, 'You must set up the project dependencies, run the following commands:' . PHP_EOL . 'curl -s http://getcomposer.org/installer | php' . PHP_EOL . 'php composer.phar install' . PHP_EOL);
exit(1);
}
$xml = '';
while (($buffer = fgets(STDIN)) !== FALSE) {
$xml .= $buffer;
}
if (!empty($xml)) {
$xmlstring = \eLifeIngestXsl\ConvertXML\XMLString::fromString($xml);
$convertxml = new \eLifeIngestXsl\ConvertXMLToHtml($xmlstring);
$sections = ['//h1[contains(concat(" ", normalize-space(@class), " "), " page-title ")]' => $convertxml->getTitle(), '//*[@id="abstract"]/div' => $convertxml->getAbstract(), '//*[@id="digest"]/div' => $convertxml->getDigest(), '//*[@id="main-text"]/div' => $convertxml->getMainText(), '//*[@id="references"]/div' => $convertxml->getReferences(), '//*[@id="acknowledgements"]/div' => $convertxml->getAcknowledgements(), '//*[@id="decision-letter"]/div' => $convertxml->getDecisionLetter(), '//*[@id="author-response"]/div' => $convertxml->getAuthorResponse()];
$excludes = ['//*[contains(concat(" ", normalize-space(@class), " "), " author-list-full ")]', '//*[contains(concat(" ", normalize-space(@class), " "), " elife-article-indicators ")]', '//*[contains(concat(" ", normalize-space(@class), " "), " panel-region-content-top ")]', '//*[contains(concat(" ", normalize-space(@class), " "), " pane-panels-ajax-tab-tabs ")]', '//*[contains(concat(" ", normalize-space(@class), " "), " author-list ")]', '//*[contains(concat(" ", normalize-space(@class), " "), " elife-institutions-list ")]', '//*[contains(concat(" ", normalize-space(@class), " "), " pane-elife-article-doi ")]', '//*[contains(concat(" ", normalize-space(@class), " "), " pane-elife-article-toolbox ")]', '//*[contains(concat(" ", normalize-space(@class), " "), " pane-elife-article-jumpto ")]', '//*[contains(concat(" ", normalize-space(@class), " "), " pane-elife-article-categories ")]'];
$dom_template = new DOMDocument();
$dom_template->loadHTMLFile(__DIR__ . '/elife-research-article.tpl.html');
$html_prefix = '<meta http-equiv="content-type" content="text/html; charset=utf-8">';
$wrapper = 'wrapper';
foreach ($sections as $xpath_query => $html) {
if (!empty($html)) {
$xpath = new DOMXpath($dom_template);
$elements = $xpath->query($xpath_query);
if ($elements->length) {
$replace_node = $elements->item(0);
$replace_dom = new DOMDocument();
$replace_dom->loadHTML($html_prefix . '<' . $wrapper . '>' . $html . '</' . $wrapper . '>');
$children = $replace_node->childNodes;
if (!empty($xml)) {
$params = [];
$types = ['bib', 'ris', 'html'];
while ($param = array_shift($_SERVER['argv'])) {
switch ($param) {
case '--type':
case '-t':
$type = array_shift($_SERVER['argv']);
if (empty($type) || !in_array($type, $types)) {
fwrite(STDERR, 'Please declare a supported conversion type:' . PHP_EOL . '* ' . implode(PHP_EOL . '* ', $types) . PHP_EOL);
exit(1);
}
$params['type'] = $type;
break;
}
}
$params += ['type' => 'html'];
$convertxml = '';
$xmlstring = \eLifeIngestXsl\ConvertXML\XMLString::fromString($xml);
switch ($params['type']) {
case 'bib':
$convertxml = new \eLifeIngestXsl\ConvertXMLToBibtex($xmlstring);
break;
case 'ris':
$convertxml = new \eLifeIngestXsl\ConvertXMLToRis($xmlstring);
break;
default:
$convertxml = new \eLifeIngestXsl\ConvertXMLToHtml($xmlstring);
}
echo $convertxml->getOutput();
}
