public function importNeuropathNominatif($folderNominatif)
{
$countNotImported = 0;
$attributes = array();
if (substr($folderNominatif, -1) != '/') {
$folderNominatif .= '/';
}
chdir(Yii::app()->basePath . "/" . $folderNominatif);
$files = array_filter(glob('*'), 'is_file');
echo count($files) . " files detected \n";
foreach ($files as $importedFile) {
$pos = strpos($importedFile, '.');
$file_pos = substr($importedFile, 0, $pos);
if (file_exists("not_imported/{$file_pos}.txt")) {
unlink("not_imported/{$file_pos}.txt");
}
$dataPatient = simplexml_load_file($importedFile);
foreach ($dataPatient->children() as $samples) {
foreach ($samples->children() as $sample) {
$neuropath = new Neuropath();
$patient = (object) null;
$patient->id = null;
$patient->source = 1;
// Banque de cerveaux
$patient->sourceId = null;
foreach ($sample->children() as $notes) {
foreach ($notes->children() as $note) {
switch ($note->key) {
case "id_donor":
$id_donor = (string) $note->value;
break;
case "birthName":
$patient->birthName = (string) $note->value;
break;
case "useName":
$patient->useName = (string) $note->value;
break;
case "firstName":
$pos = strpos((string) $note->value, ",");
if ($pos) {
$patient->firstName = substr((string) $note->value, 0, $pos);
} else {
$patient->firstName = (string) $note->value;
}
break;
case "birthDate":
$patient->birthDate = (string) $note->value;
break;
case "gender":
$patient->sex = (string) $note->value;
if ($patient->sex == null) {
$patient->sex = "U";
}
if ($patient->sex == "M" && $patient->birthName == null && $patient->useName != null) {
$patient->birthName = $patient->useName;
}
break;
default:
if (!in_array($note->key, $attributes)) {
$attributes[(string) $note->key] = (string) $note->value;
}
}
}
if ($this->emptyFieldExist($patient) != true) {
$patientest = CommonTools::wsGetPatient($patient);
if ($patientest === 'NoPatient') {
$patient = CommonTools::wsAddPatient($patient);
$patientSIP = get_object_vars($patient);
foreach ($patientSIP as $k => $v) {
if ($k == "id") {
$criteria = new EMongoCriteria();
$criteria->id_donor = $id_donor;
$neuropath = Neuropath::model()->find($criteria);
if ($neuropath != null) {
$neuropath->initSoftAttribute("id_cbsd");
$neuropath->id_cbsd = $v;
foreach ($attributes as $key => $value) {
$neuropath->initSoftAttribute($key);
$neuropath->{$key} = $value;
}
$neuropath->save();
}
}
}
}
} else {
$countNotImported++;
$this->writePatientsNotImported($patient, $file_pos);
}
}
}
}
if ($countNotImported > 0) {
$this->log($countNotImported);
}
//copy($importedFile, "treated/$importedFile");
//unlink($importedFile);
}
}
/**
* testing method to check if function return an object
*/
public function testWsAddPatient()
{
$patient = $this->patient();
$this->assertInternalType('string', CommonTools::wsAddPatient($patient));
// TODO : test exception
}
public function actionAffichepatient()
{
$model = new PatientForm();
$patient = (object) null;
if (isset($_SESSION['datapatient'])) {
$patient = $_SESSION['datapatient'];
$model->copyPatient($patient);
}
if (isset($_POST['PatientForm'])) {
$actionForm = $_POST['PatientForm']['action'];
$model = new PatientForm();
$model->attributes = $_POST['PatientForm'];
if ($_POST['PatientForm']['prenom'] == "" || $_POST['PatientForm']['nom_naissance'] == "" || $_POST['PatientForm']['date_naissance'] == "") {
Yii::app()->user->setFlash(TbAlert::TYPE_ERROR, Yii::t('common', 'missingFields'));
$this->redirect(array('site/patient'));
}
if ($model->dateFormat($model->date_naissance) == false) {
Yii::app()->user->setFlash('error', Yii::t('common', 'unvalidDate'));
$this->redirect(array('site/patient'));
}
$patient->id = null;
$patient->source = null;
//à identifier en fonction de l'app
$patient->sourceId = null;
$patient->birthName = $model->nom_naissance;
if ($model->nom != "") {
$patient->useName = $model->nom;
} else {
$patient->useName = null;
}
$patient->firstName = $model->prenom;
$patient->birthDate = $model->date_naissance;
if ($model->sexe != "") {
$patient->sex = $model->sexe;
} else {
$patient->sex = null;
}
if ($actionForm == 'create') {
$patient->source = $model->source == "1" ? "1" : "2";
$patientest = CommonTools::wsGetPatient($patient);
if ($patientest == 'NoPatient') {
$patient = CommonTools::wsAddPatient($patient);
} else {
$patient = $patientTest;
}
} else {
$patient = CommonTools::wsGetPatient($patient);
}
}
switch ($patient) {
case "NoPatient":
Yii::app()->user->setFlash(TbAlert::TYPE_ERROR, Yii::t('common', 'noPatient'));
Yii::app()->user->setState('patientModel', $model);
$model->scenario = 'create';
$this->render('patient_bis', array('model' => $model, 'actionForm' => 'create'));
exit;
break;
case "PatientNotSaved":
Yii::app()->user->setFlash(TbAlert::TYPE_ERROR, Yii::t('common', 'patientNotSaved'));
Yii::app()->user->setState('patientModel', $model);
$model->scenario = 'create';
$this->render('patient_bis', array('model' => $model, 'actionForm' => 'create'));
exit;
break;
case "ManyPatient":
Yii::app()->user->setFlash(TbAlert::TYPE_ERROR, Yii::t('common', 'manyPatient'));
Yii::app()->user->setState('patientModel', $model);
$this->render('patient_bis', array('model' => $model, 'actionForm' => 'search'));
exit;
break;
default:
}
if ($model->validate() && isset($patient->id)) {
$model->id = $patient->id;
$criteria = new EMongoCriteria();
$criteria->id_patient = (string) $model->id;
$criteriaCliniques = new EMongoCriteria($criteria);
if (Yii::app()->user->getState('activeProfil') == "clinicien") {
$criteriaCliniques->login = Yii::app()->user->id;
}
$criteriaCliniques->type = "clinique";
$criteriaNeuropathologiques = new EMongoCriteria($criteria);
$criteriaNeuropathologiques->type = "neuropathologique";
$neuropath = Answer::model()->findAll($criteriaNeuropathologiques);
$criteriaGenetiques = new EMongoCriteria($criteria);
$criteriaGenetiques->type = "genetique";
$genetique = Answer::model()->findAll($criteriaGenetiques);
$dataProviderCliniques = new EMongoDocumentDataProvider('Answer');
$dataProviderCliniques->setId('dpCli');
$dataProviderNeuropathologiques = new EMongoDocumentDataProvider('Answer');
$dataProviderCliniques->setId('dpNeuPa');
$dataProviderGenetiques = new EMongoDocumentDataProvider('Answer');
$dataProviderCliniques->setId('dpGen');
$dataProviderCliniques->setCriteria($criteriaCliniques);
$dataProviderNeuropathologiques->setCriteria($criteriaNeuropathologiques);
$dataProviderGenetiques->setCriteria($criteriaGenetiques);
$questionnaire = Questionnaire::model()->findAll();
$_SESSION['datapatient'] = $patient;
if (isset($_SESSION['datapatient'])) {
$this->render('affichepatient', array('model' => $model, 'dataProviderCliniques' => $dataProviderCliniques, 'dataProviderNeuropathologiques' => $dataProviderNeuropathologiques, 'dataProviderGenetiques' => $dataProviderGenetiques, 'questionnaire' => $questionnaire, 'patient' => $patient, 'neuropath' => $neuropath, 'genetique' => $genetique));
} elseif (isset($_POST['PatientForm'])) {
$this->render('affichepatient', array('model' => $model, 'dataProviderCliniques' => $dataProviderCliniques, 'dataProviderNeuropathologiques' => $dataProviderNeuropathologiques, 'dataProviderGenetiques' => $dataProviderGenetiques, 'patient' => $patient));
} else {
$this->redirect(array('site/patient'));
}
} else {
$this->redirect(array('site/patient'));
}
}
