public static function merge_concepts($args)
{
$taxon_concept_id_1 = @$args['id1'];
$taxon_concept_id_2 = @$args['id2'];
$confirmation = @$args['confirmed'];
if (!$taxon_concept_id_1 || !is_numeric($taxon_concept_id_1) || !$taxon_concept_id_2 || !is_numeric($taxon_concept_id_2)) {
throw new \Exception("supercede_concepts.php [id1] [id2] [confirmed]");
}
if ($confirmation == 'confirmed') {
\CodeBridge::print_message("Merging TC# {$taxon_concept_id_1} to {$taxon_concept_id_2}");
TaxonConcept::supercede_by_ids($taxon_concept_id_1, $taxon_concept_id_2, true);
// Only applicable if run via resque, but safe *enough* otherwise:
TaxonConcept::unlock_classifications_by_id($taxon_concept_id_1);
TaxonConcept::unlock_classifications_by_id($taxon_concept_id_2);
\CodeBridge::print_message("Done. Pages {$taxon_concept_id_1} and {$taxon_concept_id_2} have been merged to: " . min($taxon_concept_id_1, $taxon_concept_id_2));
} else {
$descendant_objects = TaxonConcept::count_descendants_objects($taxon_concept_id_1);
$descendants = TaxonConcept::count_descendants($taxon_concept_id_1);
echo "\n\nTaxonConcept1: " . $taxon_concept_id_1 . "\n";
echo "Descendant Objects: {$descendant_objects}\n";
echo "Descendant Concepts: {$descendants}\n";
$descendant_objects = TaxonConcept::count_descendants_objects($taxon_concept_id_2);
$descendants = TaxonConcept::count_descendants($taxon_concept_id_2);
echo "\n\nTaxonConcept2: " . $taxon_concept_id_2 . "\n";
echo "Descendant Objects: {$descendant_objects}\n";
echo "Descendant Concepts: {$descendants}\n";
}
}
public static function split_entry($args)
{
$hierarchy_entry_id = @$args['hierarchy_entry_id'];
$bad_match_hierarchy_entry_id = @$args['bad_match_hierarchy_entry_id'];
$confirmation = @$args['confirmed'];
if (!$hierarchy_entry_id || !is_numeric($hierarchy_entry_id) || !$bad_match_hierarchy_entry_id || !is_numeric($bad_match_hierarchy_entry_id)) {
throw new \Exception("split_entry.php [hierarchy_entry_id] [bad_match_hierarchy_entry_id] [confirmed]");
}
\CodeBridge::print_message("Splitting HE# {$hierarchy_entry_id} from {$bad_match_hierarchy_entry_id}");
$he = HierarchyEntry::find($hierarchy_entry_id);
$bad_he = HierarchyEntry::find($hierarchy_entry_id);
if (!$he->id || !$bad_he->id) {
throw new \Exception("Invalid ID");
}
if ($he->taxon_concept_id != $bad_he->taxon_concept_id) {
throw new \Exception("The bad match ID isn't from the same concept");
}
if ($confirmation == 'confirmed') {
$user_id = 13;
# 13 is Patrick's user ID - TODO - this should be an argument. :|
$new_taxon_concept_id = HierarchyEntry::split_from_concept_static($hierarchy_entry_id);
$GLOBALS['db_connection']->query("INSERT IGNORE INTO curated_hierarchy_entry_relationships (hierarchy_entry_id_1, hierarchy_entry_id_2, user_id, equivalent)\n VALUES ({$hierarchy_entry_id}, {$bad_match_hierarchy_entry_id}, {$user_id}, 0)");
\CodeBridge::print_message("Done. HE# {$hierarchy_entry_id} was split into a new concept # {$new_taxon_concept_id}");
} else {
echo "\n\nRemoving:\n";
print_r($he);
echo "Name: " . $he->name->string . "\n\nFrom:\n";
print_r($he->taxon_concept);
$descendant_objects = TaxonConcept::count_descendants_objects($he->taxon_concept_id);
echo "\n\nDescendant Objects: {$descendant_objects}\n\n";
}
}
public static function update_resource_contributions($resource_id)
{
// inform rails when resource finish harvest
\Resque::enqueue('notifications', 'CodeBridge', array('cmd' => 'update_resource_contributions', 'resource_id' => $resource_id));
CodeBridge::print_message("++ Enqueued notifications/CodeBridge/update_resource_contributions(resource_id = " . $resource_id . ")");
}
public static function move_entry($args)
{
$taxon_concept_id_from = @$args['taxon_concept_id_from'];
$hierarchy_entry_id = @$args['hierarchy_entry_id'];
$taxon_concept_id_to = @$args['taxon_concept_id_to'];
$bad_match_hierarchy_entry_id = @$args['bad_match_hierarchy_entry_id'];
$confirmation = @$args['confirmed'];
if (!$taxon_concept_id_from || !is_numeric($taxon_concept_id_from) || !$hierarchy_entry_id || !is_numeric($hierarchy_entry_id) || !$taxon_concept_id_to || !is_numeric($taxon_concept_id_to) || !$bad_match_hierarchy_entry_id || !is_numeric($bad_match_hierarchy_entry_id)) {
throw new \Exception("split_concept.php [taxon_concept_id_from] [hierarchy_entry_id] [taxon_concept_id_to] [bad_match_hierarchy_entry_id] [confirmed] [reindex?]");
}
\CodeBridge::print_message("Moving HE# {$hierarchy_entry_id} from TC# {$taxon_concept_id_from} to TC# " . "{$taxon_concept_id_to} avoiding HE# {$bad_match_hierarchy_entry_id}");
$tc_from = TaxonConcept::find($taxon_concept_id_from);
$tc_to = TaxonConcept::find($taxon_concept_id_to);
$he = HierarchyEntry::find($hierarchy_entry_id);
$bad_he = HierarchyEntry::find($bad_match_hierarchy_entry_id);
if (!$he->id || !$tc_from->id || !$tc_to->id || !$bad_he->id) {
throw new \Exception("Invalid ID");
}
if ($he->taxon_concept_id != $tc_from->id) {
throw new \Exception("This entry is not in the source concept");
}
if ($he->taxon_concept_id != $bad_he->taxon_concept_id) {
throw new \Exception("The bad match ID isn't from the same concept");
}
if ($confirmation == 'confirmed' || $confirmation == 'force') {
if ($confirmation == 'force') {
$force_move_if_disallowed = true;
} else {
$force_move_if_disallowed = false;
}
$user_id = 13;
# 13 is Patrick's user ID
// TODO Need to look through all the HEs in the TC we're moving *to* and cycle through them to make sure none of
// them are blocking the move:
foreach ($tc_to->hierarchy_entries as $tc_he) {
$GLOBALS['db_connection']->query("DELETE FROM curated_hierarchy_entry_relationships\n WHERE hierarchy_entry_id_1={$hierarchy_entry_id} AND hierarchy_entry_id_2=" . $tc_he->id . " AND equivalent=0");
}
$moved = HierarchyEntry::move_to_concept_static($hierarchy_entry_id, $taxon_concept_id_to, $force_move_if_disallowed, true);
if (!$moved) {
\CodeBridge::print_message("NOT ALLOWED: throwing exception");
throw new \Exception("This move is not allowed; it would affect other hierarchies");
}
$GLOBALS['db_connection']->query("INSERT IGNORE INTO curated_hierarchy_entry_relationships VALUES ({$hierarchy_entry_id}, {$bad_match_hierarchy_entry_id}, {$user_id}, 0)");
\CodeBridge::print_message("Done. Moved {$hierarchy_entry_id} to {$taxon_concept_id_to}");
} else {
echo "\n\nRemoving:\n";
print_r($he);
echo "Name: " . $he->name->string . "\n\nFrom:\n";
print_r($tc_from);
echo "To:\n";
print_r($tc_to);
$descendant_objects = TaxonConcept::count_descendants_objects($tc_from->id);
$descendants = TaxonConcept::count_descendants($tc_from->id);
echo "\n\nTaxonConcept1: {$tc_from->id}\n";
echo "Descendant Objects: {$descendant_objects}\n";
echo "Descendant Concepts: {$descendants}\n";
$descendant_objects = TaxonConcept::count_descendants_objects($tc_to->id);
$descendants = TaxonConcept::count_descendants($tc_to->id);
echo "\n\nTaxonConcept1: {$tc_to->id}\n";
echo "Descendant Objects: {$descendant_objects}\n";
echo "Descendant Concepts: {$descendants}\n";
echo "\n\nDon't forget to solr_update_concept.php\n\n";
}
}