public function testCitationCrud() { $nameSchema = new NlmNameSchema(); $nameDescription = new MetadataDescription($nameSchema, ASSOC_TYPE_AUTHOR); $nameDescription->addStatement('given-names', $value = 'Peter'); $nameDescription->addStatement('given-names', $value = 'B'); $nameDescription->addStatement('surname', $value = 'Bork'); $nameDescription->addStatement('prefix', $value = 'Mr.'); $citationSchema = new NlmCitationSchema(); $citationDescription = new MetadataDescription($citationSchema, ASSOC_TYPE_CITATION); $citationDescription->addStatement('person-group[@person-group-type="author"]', $nameDescription); $citationDescription->addStatement('article-title', $value = 'PHPUnit in a nutshell', 'en_US'); $citationDescription->addStatement('article-title', $value = 'PHPUnit in Kürze', 'de_DE'); $citationDescription->addStatement('date', $value = '2009-08-17'); $citationDescription->addStatement('size', $value = 320); $citationDescription->addStatement('uri', $value = 'http://phpunit.org/nutshell'); $citation = new Citation('raw citation'); $citation->setAssocType(ASSOC_TYPE_ARTICLE); $citation->setAssocId(5); $citation->setEditedCitation('edited citation'); $citation->setParseScore(50); $citation->injectMetadata($citationDescription); $citationId = $this->citationDAO->insertCitation($citation); self::assertTrue(is_numeric($citationId)); self::assertTrue($citationId > 0); }
public function testCitationCrud() { $nameSchema = new NlmNameSchema(); $nameDescription = new MetadataDescription($nameSchema, ASSOC_TYPE_AUTHOR); $nameDescription->addStatement('given-names', $value = 'Peter'); $nameDescription->addStatement('given-names', $value = 'B'); $nameDescription->addStatement('surname', $value = 'Bork'); $nameDescription->addStatement('prefix', $value = 'Mr.'); $citationSchema = new NlmCitationSchema(); $citationDescription = new MetadataDescription($citationSchema, ASSOC_TYPE_CITATION); $citationDescription->addStatement('person-group[@person-group-type="author"]', $nameDescription); $citationDescription->addStatement('article-title', $value = 'PHPUnit in a nutshell', 'en_US'); $citationDescription->addStatement('article-title', $value = 'PHPUnit in Kürze', 'de_DE'); $citationDescription->addStatement('date', $value = '2009-08-17'); $citationDescription->addStatement('size', $value = 320); $citationDescription->addStatement('uri', $value = 'http://phpunit.org/nutshell'); $citation = new Citation('raw citation'); $citation->setAssocType(ASSOC_TYPE_ARTICLE); $citation->setAssocId(999999); $citation->setEditedCitation('edited citation'); $citation->setParseScore(50); $citation->injectMetadata($citationDescription); // Create citation $citationId = $this->citationDAO->insertCitation($citation); self::assertTrue(is_numeric($citationId)); self::assertTrue($citationId > 0); // Retrieve citation $citationById = $this->citationDAO->getCitation($citationId); $citationById->getMetadataFieldNames(); // Initializes internal state for comparison. self::assertEquals($citation, $citationById); $citationsByAssocIdDaoFactory = $this->citationDAO->getCitationsByAssocId(ASSOC_TYPE_ARTICLE, 999999); $citationsByAssocId = $citationsByAssocIdDaoFactory->toArray(); self::assertEquals(1, count($citationsByAssocId)); $citationsByAssocId[0]->getMetadataFieldNames(); // Initializes internal state for comparison. self::assertEquals($citation, $citationsByAssocId[0]); // Update citation $citationDescription->removeStatement('date'); $citationDescription->addStatement('article-title', $value = 'PHPUnit rápido', 'pt_BR'); $updatedCitation = new Citation('another raw citation'); $updatedCitation->setId($citationId); $updatedCitation->setAssocType(ASSOC_TYPE_ARTICLE); $updatedCitation->setAssocId(999998); $updatedCitation->setEditedCitation('another edited citation'); $updatedCitation->setParseScore(50); $updatedCitation->injectMetadata($citationDescription); $this->citationDAO->updateCitation($updatedCitation); $citationAfterUpdate = $this->citationDAO->getCitation($citationId); $citationAfterUpdate->getMetadataFieldNames(); // Initializes internal state for comparison. self::assertEquals($updatedCitation, $citationAfterUpdate); // Delete citation $this->citationDAO->deleteCitationsByAssocId(ASSOC_TYPE_ARTICLE, 999998); self::assertNull($this->citationDAO->getCitation($citationId)); }
/** * Inject the given meta-data into a new citation object. * @param $metadataDescription MetadataDescription * @return Citation */ protected function &getCitation($citationDescription) { // Instantiate the citation and inject the meta-data. import('lib.pkp.classes.citation.Citation'); $citation = new Citation('raw citation'); $citation->setAssocType($this->assocType); $citation->setAssocId($this->assocId); $citation->injectMetadata($citationDescription); return $citation; }
/** * @covers CitationDAO */ public function testCitationCrud() { $citationDao = DAORegistry::getDAO('CitationDAO'); /* @var $citationDao CitationDAO */ $nameSchemaName = 'lib.pkp.plugins.metadata.nlm30.schema.Nlm30NameSchema'; $nameDescription = new MetadataDescription($nameSchemaName, ASSOC_TYPE_AUTHOR); $nameDescription->addStatement('given-names', $value = 'Peter'); $nameDescription->addStatement('given-names', $value = 'B'); $nameDescription->addStatement('surname', $value = 'Bork'); $nameDescription->addStatement('prefix', $value = 'Mr.'); $citationSchemaName = 'lib.pkp.plugins.metadata.nlm30.schema.Nlm30CitationSchema'; $citationDescription = new MetadataDescription($citationSchemaName, ASSOC_TYPE_CITATION); $citationDescription->addStatement('person-group[@person-group-type="author"]', $nameDescription); $citationDescription->addStatement('article-title', $value = 'PHPUnit in a nutshell', 'en_US'); $citationDescription->addStatement('article-title', $value = 'PHPUnit in Kürze', 'de_DE'); $citationDescription->addStatement('date', $value = '2009-08-17'); $citationDescription->addStatement('size', $value = 320); $citationDescription->addStatement('uri', $value = 'http://phpunit.org/nutshell'); // Add a simple source description. $sourceDescription = new MetadataDescription($citationSchemaName, ASSOC_TYPE_CITATION); $sourceDescription->setDisplayName('test'); $sourceDescription->addStatement('article-title', $value = 'a simple source description', 'en_US'); $sourceDescription->setSeq(0); $citation = new Citation('raw citation'); $citation->setAssocType(ASSOC_TYPE_ARTICLE); $citation->setAssocId(999999); $citation->setSeq(50); $citation->addSourceDescription($sourceDescription); $citation->injectMetadata($citationDescription); // Create citation. $citationId = $citationDao->insertObject($citation); self::assertTrue(is_numeric($citationId)); self::assertTrue($citationId > 0); // Retrieve citation. $citationById = $citationDao->getObjectById($citationId); // Fix state differences for comparison. $citation->removeSupportedMetadataAdapter($citationSchemaName); $citationById->removeSupportedMetadataAdapter($citationSchemaName); $citationById->_extractionAdaptersLoaded = true; $citationById->_injectionAdaptersLoaded = true; $sourceDescription->setAssocId($citationId); $sourceDescription->removeSupportedMetadataAdapter($citationSchemaName); $sourceDescriptions = $citationById->getSourceDescriptions(); $sourceDescriptions['test']->getMetadataSchema(); // this will instantiate the meta-data schema internally. self::assertEquals($citation, $citationById); $citationsByAssocIdDaoFactory = $citationDao->getObjectsByAssocId(ASSOC_TYPE_ARTICLE, 999999); $citationsByAssocId = $citationsByAssocIdDaoFactory->toArray(); self::assertEquals(1, count($citationsByAssocId)); // Fix state differences for comparison. $citationsByAssocId[0]->_extractionAdaptersLoaded = true; $citationsByAssocId[0]->_injectionAdaptersLoaded = true; $citationsByAssocId[0]->removeSupportedMetadataAdapter($citationSchemaName); $sourceDescriptionsByAssocId = $citationsByAssocId[0]->getSourceDescriptions(); $sourceDescriptionsByAssocId['test']->getMetadataSchema(); // this will instantiate the meta-data schema internally. self::assertEquals($citation, $citationsByAssocId[0]); // Update citation. $citationDescription->removeStatement('date'); $citationDescription->addStatement('article-title', $value = 'PHPUnit rápido', 'pt_BR'); // Update source descriptions. $sourceDescription->addStatement('article-title', $value = 'edited source description', 'en_US', true); $updatedCitation = new Citation('another raw citation'); $updatedCitation->setId($citationId); $updatedCitation->setAssocType(ASSOC_TYPE_ARTICLE); $updatedCitation->setAssocId(999998); $updatedCitation->setSeq(50); $updatedCitation->addSourceDescription($sourceDescription); $updatedCitation->injectMetadata($citationDescription); $citationDao->updateObject($updatedCitation); $citationAfterUpdate = $citationDao->getObjectById($citationId); // Fix state differences for comparison. $updatedCitation->removeSupportedMetadataAdapter($citationSchemaName); $citationAfterUpdate->removeSupportedMetadataAdapter($citationSchemaName); $citationAfterUpdate->_extractionAdaptersLoaded = true; $citationAfterUpdate->_injectionAdaptersLoaded = true; $sourceDescriptionsAfterUpdate = $citationAfterUpdate->getSourceDescriptions(); $sourceDescriptionsAfterUpdate['test']->getMetadataSchema(); // this will instantiate the meta-data schema internally. $sourceDescription->removeSupportedMetadataAdapter($citationSchemaName); self::assertEquals($updatedCitation, $citationAfterUpdate); // Delete citation $citationDao->deleteObjectsByAssocId(ASSOC_TYPE_ARTICLE, 999998); self::assertNull($citationDao->getObjectById($citationId)); }
/** * Import citations from a raw citation list to the object * described by the given association type and id. * @param $request Request * @param $assocType int * @param $assocId int * @param $rawCitationList string * @return integer the number of spawned citation checking processes */ function importCitations($request, $assocType, $assocId, $rawCitationList) { assert(is_numeric($assocType) && is_numeric($assocId)); $assocType = (int) $assocType; $assocId = (int) $assocId; // Remove existing citations. $this->deleteObjectsByAssocId($assocType, $assocId); // Tokenize raw citations import('lib.pkp.classes.citation.CitationListTokenizerFilter'); $citationTokenizer = new CitationListTokenizerFilter(); $citationStrings = $citationTokenizer->execute($rawCitationList); // Instantiate and persist citations $citations = array(); if (is_array($citationStrings)) { foreach ($citationStrings as $seq => $citationString) { $citation = new Citation($citationString); // Initialize the citation with the raw // citation string. $citation->setRawCitation($citationString); // Set the object association $citation->setAssocType($assocType); $citation->setAssocId($assocId); // Set the counter $citation->setSequence($seq + 1); $this->insertObject($citation); $citations[$citation->getId()] = $citation; } } // Check new citations in parallel. $noOfProcesses = (int) Config::getVar('general', 'citation_checking_max_processes'); $processDao = DAORegistry::getDAO('ProcessDAO'); return $processDao->spawnProcesses($request, 'api.citation.CitationApiHandler', 'checkAllCitations', PROCESS_TYPE_CITATION_CHECKING, $noOfProcesses); }
/** * This will retrieve a citation object from the * grids data source based on the request arguments. * If no citation can be found then this will raise * a fatal error. * @param $args array * @param $createIfMissing boolean If this is set to true * then a citation object will be instantiated if no * citation id is in the request. * @return Citation */ function &getCitationFromArgs($request, &$args, $createIfMissing = false) { // Identify the citation id and retrieve the // corresponding element from the grid's data source. if (isset($args['citationId'])) { $citation =& $this->getRowDataElement($request, $args['citationId']); if (is_null($citation)) { fatalError('Invalid citation id!'); } } else { if ($createIfMissing) { // It seems that a new citation is being edited/updated import('lib.pkp.classes.citation.Citation'); $citation = new Citation(); $citation->setAssocType($this->getAssocType()); $citation->setAssocId($this->getAssocId()); } else { fatalError('Missing citation id!'); } } return $citation; }
/** * This will retrieve a citation object from the * grids data source based on the request arguments. * If no citation can be found then this will raise * a fatal error. * @param $args array * @param $createIfMissing boolean If this is set to true * then a citation object will be instantiated if no * citation id is in the request. * @return Citation */ function &_getCitationFromArgs(&$args, $createIfMissing = false) { // Identify the citation id and retrieve the // corresponding element from the grid's data source. if (!isset($args['citationId'])) { if ($createIfMissing) { // It seems that a new citation is being edited/updated import('citation.Citation'); $citation = new Citation(); $citation->setAssocType(ASSOC_TYPE_ARTICLE); $article =& $this->getArticle(); $citation->setAssocId($article->getId()); } else { fatalError('Missing citation id!'); } } else { $citation =& $this->getRowDataElement($args['citationId']); if (is_null($citation)) { fatalError('Invalid citation id!'); } } return $citation; }