/**
* PRIVATE routine to upload the file, add it to the database, convert into proof formats and ingest in repository.
* @param $fileName string index into the $_FILES array
* @param $type string identifying type
* @param $fileId int ID of an existing file to update
* @param $overwrite boolean overwrite all previous revisions of the file (revision number is still incremented)
* @return int the file ID (false if upload failed)
*/
function handleUpload($fileName, $type, $fileId = null, $overwrite = false)
{
if (HookRegistry::call('ArticleFileManager::handleUpload', array(&$fileName, &$type, &$fileId, &$overwrite, &$result))) {
return $result;
}
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$articleFileDao =& DAORegistry::getDAO('ArticleFileDAO');
$typePath = $this->typeToPath($type);
$dir = $this->filesDir . $typePath . '/';
//%CBP% get the most recent supplementary files - this is used later for upating supplmentary file datastreams
$CBPPlatformDao =& DAORegistry::getDAO('CBPPlatformDAO');
$mostRecentSupplementaryFiles = $CBPPlatformDao->getMostRecentSupplementaryFiles($this->articleId, $fileId);
if (!$fileId) {
// Insert dummy file to generate file id FIXME?
$dummyFile = true;
$articleFile =& $this->generateDummyFile($this->article);
} else {
$dummyFile = false;
$articleFile = new ArticleFile();
$articleFile->setRevision($articleFileDao->getRevisionNumber($fileId) + 1);
$articleFile->setArticleId($this->articleId);
$articleFile->setFileId($fileId);
$articleFile->setDateUploaded(Core::getCurrentDate());
$articleFile->setDateModified(Core::getCurrentDate());
}
$article = $articleDao->getArticle($articleFile->getArticleId());
$articleFile->setFileType($_FILES[$fileName]['type']);
$articleFile->setFileSize($_FILES[$fileName]['size']);
$articleFile->setOriginalFileName(ArticleFileManager::truncateFileName($_FILES[$fileName]['name'], 127));
$articleFile->setType($typePath);
$articleFile->setRound($this->article->getCurrentRound());
$newFileName = $this->generateFilename($articleFile, $type, $this->getUploadedFileName($fileName));
if (!$this->uploadFile($fileName, $dir . $newFileName)) {
// Delete the dummy file we inserted
$articleFileDao->deleteArticleFileById($articleFile->getFileId());
return false;
}
if ($dummyFile) {
$articleFileDao->updateArticleFile($articleFile);
} else {
$articleFileDao->insertArticleFile($articleFile);
}
if ($overwrite) {
$this->removePriorRevisions($articleFile->getFileId(), $articleFile->getRevision());
}
//%CBP% Upload file to Repository and update database with PID/DsId
$epubconvert = new CBPPlatformEpubConvert();
$mobiconvert = new CBPPlatformMobiConvert();
$pdfconvert = new CBPPlatformPdfConvert();
if ($type == "SP") {
//if we're uploading a supplementary file
if ($fileId) {
$dsSuffix = str_replace("content", "", $mostRecentSupplementaryFiles[0]['fedora_dsid']);
} else {
$mostRecentSupplementaryFiles = $CBPPlatformDao->getMostRecentSupplementaryFiles($this->articleId);
}
if (count($mostRecentSupplementaryFiles) == 1 && !$fileId) {
$dsSuffix = "05";
} elseif (count($mostRecentSupplementaryFiles) > 1 && !$fileId) {
$mostRecentSupplementaryFiles = $CBPPlatformDao->getMostRecentSupplementaryFiles($this->articleId);
$dsId = str_replace("content", "", $mostRecentSupplementaryFiles[1]['fedora_dsid']);
$dsId = (int) $dsId;
$dsId++;
$dsSuffix = sprintf("%02d", $dsId);
}
}
if (mime_content_type($dir . $newFileName) == "application/zip" && $type != "SP") {
$ebookFileName = str_replace($this->parseFileExtension($newFileName), "", $newFileName);
$epubArgs = array("author" => $this->article->getAuthorString(), "title" => $this->article->getArticleTitle(), "description" => $this->article->getArticleAbstract());
$epubconvert->createEpub($dir, $newFileName, $dir . $ebookFileName . "epub", null, $this->article->getJournalId(), $epubArgs);
$mobiconvert->createMobi($dir, $newFileName, $dir . $ebookFileName . "mobi", null, $this->article->getJournalId(), $epubArgs);
$pdfconvert->createPdf($dir, $newFileName, $dir . $ebookFileName . "pdf", null, $this->article->getJournalId(), $epubArgs);
$digitalObject = new CBPPlatformDigitalObject();
$digitalObject->setPID($this->articleId);
//we use articleId as the unique identifier -- this should correspond with articleId in OJS database
$digitalObject->setLabel($article->getArticleTitle());
//label could be anything
$digitalObject->setNamespace(Config::getVar('general', 'component_namespace'));
$digitalObject->setPrimaryFormat("application/vnd.openxmlformats-officedocument.wordprocessingml.document");
$ext = $this->parseFileExtension($newFileName);
$label = str_replace(".{$ext}", "", $newFileName);
$ext = "docx";
$digitalObject->setDatastream(array($dsId = $dsPrefix . "content" => array("id" => $dsPrefix . "content", "file" => "{$dir}{$newFileName}", "label" => $label . ".{$ext}", "mimetype" => "application/vnd.openxmlformats-officedocument.wordprocessingml.document", "filetype" => $ext)));
//
$ext = "pdf";
$digitalObject->setDatastream(array($dsPrefix . "content02" => array("id" => $dsPrefix . "content02", "file" => "{$dir}{$ebookFileName}" . "{$ext}", "label" => $label . ".{$ext}", "mimetype" => "application/pdf", "filetype" => $ext)));
//
$ext = "epub";
$digitalObject->setDatastream(array($dsPrefix . "content03" => array("id" => $dsPrefix . "content03", "file" => "{$dir}{$ebookFileName}" . "{$ext}", "label" => $label . ".{$ext}", "mimetype" => "application/epub+zip", "filetype" => $ext)));
///
$ext = "mobi";
$digitalObject->setDatastream(array($dsPrefix . "content04" => array("id" => $dsPrefix . "content04", "file" => "{$dir}{$ebookFileName}" . "{$ext}", "label" => $label . ".{$ext}", "mimetype" => "application/x-mobipocket-ebook", "filetype" => $ext)));
} else {
$digitalObject = new CBPPlatformDigitalObject();
$digitalObject->setPID($this->articleId);
//we use articleId as the unique identifier -- this should correspond with articleId in OJS database
$digitalObject->setLabel($article->getArticleTitle());
//label could be anything
$digitalObject->setNamespace(Config::getVar('general', 'component_namespace'));
if ($type != "SP") {
$digitalObject->setPrimaryFormat(mime_content_type($dir . $newFileName));
}
$label = $newFileName;
$path_parts = pathinfo("{$dir}{$newFileName}");
$digitalObject->setDatastream(array($dsId = $dsPrefix . "content" . $dsSuffix => array("id" => $dsPrefix . "content" . $dsSuffix, "file" => "{$dir}{$newFileName}", "label" => $label, "mimetype" => $this->returnMIMEType($dir . $newFileName), "filetype" => $path_parts['extension'])));
}
$obj = new SimpleXMLElement($digitalObject->readObjectProperties());
foreach ($obj as $result) {
$noObjects = $result->count();
}
if ($noObjects == 0) {
$digitalObject->createObject();
}
$digitalObject->createObjectDatastreams();
if ($type != "SP") {
$digitalObject->makeHydraCompliant(null, $article->getArticleTitle(), $article->getAuthorString());
}
if ($digitalObject->obj->PID != "" && $dsId != "") {
$CBPPlatformDao->setFedoraObjectInformation($digitalObject->obj->PID, $digitalObject->obj->ns, $dsId, $articleFile->getFileId(), $articleFile->getRevision());
}
return $articleFile->getFileId();
}
/**
* Publish issue, and ingest converted distribution formats (EPUB, PDF, MOBI and front cover artwork) in repository
*/
function publishIssue($args)
{
$issueId = isset($args[0]) ? (int) $args[0] : 0;
$this->validate($issueId);
$issue =& $this->issue;
$journal =& Request::getJournal();
$journalId = $journal->getId();
$CBPPlatformDao =& DAORegistry::getDAO('CBPPlatformDAO');
$requiredSections = $CBPPlatformDao->getRequiredSections($journalId);
foreach ($requiredSections as $requiredSection) {
$requiredSectionsArr[$requiredSection['title']] = 1;
}
$requiredSections = $requiredSectionsArr;
$publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO');
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$publishedArticles =& $publishedArticleDao->getPublishedArticles($issueId);
$numberPublishedArticles = count($publishedArticles);
foreach ($publishedArticles as $publishedArticle) {
$article =& $articleDao->getArticle($publishedArticle->getId());
if ($article && $article->getStatus() == STATUS_QUEUED) {
$article->setStatus(STATUS_PUBLISHED);
$article->stampStatusModified();
$articleDao->updateArticle($article);
}
//TODO: %CBP% get most recent galley, not just a submission, review version etc
$articleGalleys = $publishedArticle->getGalleys();
$articleGalley = end($articleGalleys);
//get the most recent galley
if (strpos($articleGalley->_data['fileName'], "RV") !== false) {
$path = "/submission/review/";
}
if (strpos($articleGalley->_data['fileName'], "ED") !== false) {
$path = "/submission/editor/";
}
if (strpos($articleGalley->_data['fileName'], "PB") !== false) {
$path = "/public/";
}
$issueChapters[] = array("id" => $article->getArticleId(), "name" => $article->getArticleTitle(), "description" => $article->getArticleAbstract(), "author" => $article->getAuthorString(false, ', ', false), "src" => $articleGalley->_data['fileName'], "dir" => Config::getVar('files', 'files_dir') . "/journals/{$journalId}/articles/" . $articleGalley->_data['submissionId'] . $path);
$relatedItems[] = Config::getVar('general', 'component_namespace') . ":" . $article->getArticleId();
//%CBP% retreive docx supplementary files for publication in the book
$suppFiles = $publishedArticle->getSuppFiles();
foreach ($suppFiles as $suppFile) {
if ($suppFile->_data['fileType'] == "application/vnd.openxmlformats-officedocument.wordprocessingml.document") {
$suppFilesArr[] = $suppFile;
}
}
$issueAuthors[] = $article->getAuthorString(false, ', ', false);
unset($article);
}
//%CBP% adding author biographies section to the end of the book
if (array_key_exists("Author Biographies", $requiredSections)) {
foreach ($suppFilesArr as $suppFile) {
$path = "/supp/";
$title = $suppFile->getTitle();
if (stristr($title['en_US'], "author biography") != false) {
//if the title of the supplementary file doesn't include the words 'author biography', don't include
$issueChapters[] = array("id" => $suppFile->getArticleId(), "name" => $title['en_US'], "src" => $suppFile->_data['fileName'], "dir" => Config::getVar('files', 'files_dir') . "/journals/{$journalId}/articles/" . $suppFile->getArticleId() . $path, "type" => "supp", "desc" => "Author Biography");
}
}
}
asort($issueAuthors);
$numberOfIssueAuthors = count($issueAuthors);
$i = 0;
$issueAuthorsString = "";
$issueAuthors = array_unique($issueAuthors);
foreach ($issueAuthors as $issueAuthor) {
$issueAuthorsString .= $issueAuthor;
$i + 1 == $numberOfIssueAuthors ? $issueAuthorsString .= "" : ($issueAuthorsString .= "; ");
$i++;
}
//%CBP% Upload file to Repository and update database with PID/DsId
$digitalObject = new CBPPlatformDigitalObject();
$epubconvert = new CBPPlatformEpubConvert();
$mobiconvert = new CBPPlatformMobiConvert();
$pdfconvert = new CBPPlatformPdfConvert();
$coverImage = Config::getVar('general', 'base_url') . "/" . Config::getVar('files', 'public_files_dir') . "/journals/" . $issue->getJournalId() . "/" . $issue->getIssueFileName();
$epubArgs = array("author" => $issueAuthorsString, "imprint" => $journal->getJournalTitle(), "title" => $issue->getIssueTitle(), "description" => $issue->getIssueDescription(), "isbn" => $CBPPlatformDao->getIssueISBN($issueId), "cover" => $coverImage);
$epubconvert->createEpub(null, null, "cache/{$journalId}-{$issueId}.epub", $issueChapters, $journalId, $epubArgs);
$mobiconvert->createMobi(null, null, "cache/{$journalId}-{$issueId}.mobi", $issueChapters, $journalId, $epubArgs);
$pdfconvert->createPdf(null, null, "cache/{$journalId}-{$issueId}.pdf", $issueChapters, $journalId, $epubArgs, "cache/{$journalId}-{$issueId}-FC.pdf");
$digitalObject->setPID($journalId . "-" . $issueId);
$digitalObject->setLabel($issue->getIssueTitle());
$digitalObject->setNamespace(Config::getVar('general', 'compiled_namespace'));
///
$ext = "pdf";
$digitalObject->setDatastream(array($ds = "content" => array("file" => Config::getVar('general', 'docroot') . "/cache/{$journalId}-{$issueId}.{$ext}", "label" => $issue->getIssueTitle() . ".{$ext}", "mimetype" => "application/pdf", "filetype" => $ext)));
///
$ext = "epub";
$digitalObject->setDatastream(array("content02" => array("file" => Config::getVar('general', 'docroot') . "/cache/{$journalId}-{$issueId}.{$ext}", "label" => $issue->getIssueTitle() . ".{$ext}", "mimetype" => "application/epub+zip", "filetype" => $ext)));
///
$ext = "mobi";
$digitalObject->setDatastream(array("content03" => array("file" => Config::getVar('general', 'docroot') . "/cache/{$journalId}-{$issueId}.{$ext}", "label" => $issue->getIssueTitle() . ".{$ext}", "mimetype" => "application/x-mobipocket-ebook", "filetype" => $ext)));
///
$ext = "pdf";
if (file_exists(Config::getVar('general', 'docroot') . "/cache/{$journalId}-{$issueId}-FC.{$ext}")) {
$digitalObject->setDatastream(array("content04" => array("file" => Config::getVar('general', 'docroot') . "/cache/{$journalId}-{$issueId}-FC.{$ext}", "label" => $issue->getIssueTitle() . " Front Cover Artwork.pdf", "mimetype" => "application/pdf", "filetype" => $ext)));
}
$obj = new SimpleXMLElement($digitalObject->readObjectProperties());
foreach ($obj as $result) {
$noObjects = $result->count();
}
if ($noObjects == 0) {
$digitalObject->createObject();
}
$digitalObject->createObjectDatastreams();
$digitalObject->makeHydraCompliant("book", $issue->getIssueTitle(), $issueAuthorsString, $relatedItems);
$CBPPlatformDao->setFedoraIssueObjectInformation($digitalObject->obj->PID, $digitalObject->obj->ns, $ds, $issueId);
//%CBP% don't publish just yet, we don't have EIC approval for the publication, but still create the issue...
$issue->setCurrent(1);
$CBPPlatformDao->setIssuePending($issueId, 1);
// If subscriptions with delayed open access are enabled then
// update open access date according to open access delay policy
if ($journal->getSetting('publishingMode') == PUBLISHING_MODE_SUBSCRIPTION && $journal->getSetting('enableDelayedOpenAccess')) {
$delayDuration = $journal->getSetting('delayedOpenAccessDuration');
$delayYears = (int) floor($delayDuration / 12);
$delayMonths = (int) fmod($delayDuration, 12);
$curYear = date('Y');
$curMonth = date('n');
$curDay = date('j');
$delayOpenAccessYear = $curYear + $delayYears + (int) floor(($curMonth + $delayMonths) / 12);
$delayOpenAccessMonth = (int) fmod($curMonth + $delayMonths, 12);
$issue->setAccessStatus(ISSUE_ACCESS_SUBSCRIPTION);
$issue->setOpenAccessDate(date('Y-m-d H:i:s', mktime(0, 0, 0, $delayOpenAccessMonth, $curDay, $delayOpenAccessYear)));
}
$issueDao =& DAORegistry::getDAO('IssueDAO');
$issueDao->updateCurrentIssue($journalId, $issue);
// Send a notification to associated users
// %CBP% TODO: move this to EIC publishing approval stage
/*import('lib.pkp.classes.notification.NotificationManager');
$notificationManager = new NotificationManager();
$roleDao =& DAORegistry::getDAO('RoleDAO');
$notificationUsers = array();
$allUsers = $roleDao->getUsersByJournalId($journalId);
while (!$allUsers->eof()) {
$user =& $allUsers->next();
$notificationUsers[] = array('id' => $user->getId());
unset($user);
}
$url = Request::url(null, 'issue', 'current');
foreach ($notificationUsers as $userRole) {
$notificationManager->createNotification(
$userRole['id'], 'notification.type.issuePublished',
null, $url, 1, NOTIFICATION_TYPE_PUBLISHED_ISSUE
);
}
$notificationManager->sendToMailingList(
$notificationManager->createNotification(
0, 'notification.type.issuePublished',
null, $url, 1, NOTIFICATION_TYPE_PUBLISHED_ISSUE
)
);*/
Request::redirect(null, null, 'issueToc', $issue->getId());
}