function import($reference)
{
global $year_found;
global $year_actual;
global $year_roman;
global $html;
print_r($reference);
if (!array_key_exists($reference->year, $year_actual)) {
$html[$reference->year] = '<html><body>';
$html[$reference->year] .= '<h1>' . $reference->year . '</h1>';
$year_actual[$reference->year] = 0;
$year_found[$reference->year] = 0;
$year_roman[$reference->year] = 0;
}
// Articles published this year
$year_actual[$reference->year]++;
if (is_numeric($reference->spage)) {
$openurl = reference2openurl($reference);
//echo $openurl . "\n";
$biostor_id = import_from_openurl($openurl);
if ($biostor_id != 0) {
$found = true;
// Articles found this year
$year_found[$reference->year]++;
$reference->url = 'http://biostor.org/reference/' . $biostor_id;
$url = $reference->url . '.json';
$json = get($url);
$j = json_decode($json);
//print_r($j);
//echo "---\n";
$PageID = $j->bhl_pages[0];
//echo $PageID . "\n";
$html[$reference->year] .= '<div>';
$html[$reference->year] .= '<a href="' . $reference->url . '" target="_new"><img src="http://biostor.org/bhl_image.php?PageID=' . $PageID . '&thumbnail" /></a><br/>';
$html[$reference->year] .= '<a href="http://www.biodiversitylibrary.org/page/' . $PageID . '" target="_new">' . $PageID . '</a><br/>';
$html[$reference->year] .= $reference->title . '<br/>';
$html[$reference->year] .= '</div>';
}
} else {
$year_roman[$reference->year]++;
}
}
function bioguid($reference)
{
$found = false;
//echo reference2openurl($reference) . "\n";
$url = 'http://bioguid.info/openurl.php?' . reference2openurl($reference) . '&display=json';
$json = get($url);
//echo $url . "\n";
$obj = json_decode($json);
//print_r($obj);
if ($obj->status == 'ok') {
$found = true;
if (isset($obj->issn)) {
$reference->issn = $obj->issn;
}
if (isset($obj->doi)) {
$reference->doi = $obj->doi;
}
if (isset($obj->pmid)) {
$reference->pmid = $obj->pmid;
}
if (isset($obj->hdl)) {
$reference->hdl = $obj->hdl;
}
if (isset($obj->url)) {
$reference->url = $obj->url;
}
if (isset($obj->pdf)) {
$reference->pdf = $obj->pdf;
}
if (isset($obj->abstract)) {
$reference->abstract = $obj->abstract;
}
// Flesh out
if (isset($obj->atitle) && !isset($reference->title)) {
$reference->title = $obj->atitle;
}
if (isset($obj->issue) && !isset($reference->issue)) {
$reference->issue = $obj->issue;
}
if (isset($obj->spage) && !isset($reference->spage)) {
$reference->spage = $obj->spage;
}
if (isset($obj->epage) && !isset($reference->epage)) {
$reference->epage = $obj->epage;
}
if (isset($obj->url) && !isset($reference->url)) {
$reference->url = $obj->url;
}
if (isset($obj->pdf) && !isset($reference->pdf)) {
$reference->pdf = $obj->pdf;
}
}
return $found;
}
require_once dirname(__FILE__) . '/utils.php';
$filename = 'notparsed.txt';
$file_handle = fopen($filename, "r");
$failed = array();
while (!feof($file_handle)) {
$line = fgets($file_handle);
$parts = explode("\t", $line);
$parts[1] = trim($parts[1]);
if (preg_match('/(?<authorstring>.*)\\s*(?<year>[0-9]{4})\\.\\s+(?<title>.*)\\s+<em>(?<journal>.*)<\\/em>\\s+(?<series>.*)?\\s*<strong>(?<volume>\\d+)<\\/strong>(\\((?<issue>\\d+)\\))?:\\s+(?<spage>\\d+)([–|-](?<epage>\\d+))\\b/Uu', $parts[1], $m)) {
//print_r($m);
$matched = true;
$reference = reference_from_matches($m);
//print_r($reference);
$reference->id = $parts[0];
$reference->keywords[] = $parts[0];
$openurl = reference2openurl($reference);
//echo $openurl . "\n";
bioguid($reference);
if (isset($reference->epage)) {
$biostor_id = import_from_openurl($openurl);
if ($biostor_id != 0) {
$found = true;
$reference->url = 'http://biostor.org/reference/' . $biostor_id;
}
}
//print_r($reference);
echo reference2ris($reference);
} else {
/*
//echo $parts[1]. "\n";
