/**
* Get all genes matching biobricks belong to category of protein coding sequence in Registry of standard biological parts.
* @return array
*/
function getAllMatchingGene()
{
$result = array();
$annotationArr = queryAllAnnotation();
$cdsArr = queryAllCdsBiobrick();
foreach ($annotationArr as $row) {
foreach ($cdsArr as $cds) {
if (strtoupper($cds['protein']) == strtoupper($row['Gene_Name'])) {
$match = array('gid' => $row['gid'], 'biobrick_name' => $cds['name'], 'protein' => $cds['protein']);
array_push($result, $match);
}
}
}
return $result;
}
/**
* Get all annotations of gene from database.
* @return array
*/
function getAllAnnotation()
{
return queryAllAnnotation();
}