public static function show($msg = '')
{
$pre = false;
if (self::$last) {
$pre = self::$last;
}
self::$last = self::memoryGetUsage();
$data = self::$last;
$txt = humanFileSize($data['mem']);
if ($pre) {
$mem = $data['mem'] - $pre['mem'];
$mem = ($mem < 0 ? '-' : '+') . humanFileSize(abs($mem));
$txt .= "\t\t\t Delta : " . $mem;
}
echo "MemoryUsage : \t" . chr(27) . "[33m" . $txt . "[0m " . ($msg ? ' <<< ' . $msg : '') . "\n";
}
</a>
</td>
<td><input type="text" value="<?php
echo $file->name;
?>
" data-id="<?php
echo $file->id;
?>
"
class="file_name_edit form-control"/></td>
<td><?php
echo $file->type;
?>
</td>
<td><?php
echo humanFileSize($file->size);
?>
</td>
<?php
if ($file->module_name == 'partners_logo') {
?>
<td>
<form class="ajax-auto-submit" action='<?php
echo url('home/postsaveord');
?>
' method="post"><input
type="number" name="order" class="form-control" value="<?php
echo $file->ord;
?>
">
<input type="hidden" name="id" value='<?php
\t\t<div class="panel-heading"><h3 class="panel-title"><span class="glyphicon glyphicon-time"></span> View analysis later</h3></div>
\t\t<div class="panel-body">Access your results later at the following address:<br/><br/><textarea class="input-sm permalink">{$permalink}</textarea></div>
\t</div>
PANEL;
// -- Panel to show user's last analysis, if any -------------------------------
if (file_exists(DIR_UPLOADS . '/' . $GINKGO_USER_ID . '/status.xml')) {
$PANEL_PREVIOUS = <<<PANEL
\t<!-- Panel: View previous analysis results -->
\t<div class="panel panel-primary">
\t\t<div class="panel-heading"><h3 class="panel-title"><span class="glyphicon glyphicon-stats"></span> Previous analysis results</h3></div>
\t\t<div class="panel-body">See your <a href="?q=results/{$GINKGO_USER_ID}">previous analysis results</a>.<br/><br/><strong>Note</strong>: Running another analysis will overwrite previous results.</div>
\t</div>
PANEL;
}
// -- Panel for downloading tree -----------------------------------------------
$dloadFileSizes = array('SegStats' => humanFileSize("{$userDir}/SegStats"), 'SegBreaks' => humanFileSize("{$userDir}/SegBreaks"), 'SegCopy' => humanFileSize("{$userDir}/SegCopy"), 'SegNorm' => humanFileSize("{$userDir}/SegNorm"), 'SegFixed' => humanFileSize("{$userDir}/SegFixed"), 'CNV1' => humanFileSize("{$userDir}/CNV1"), 'CNV2' => humanFileSize("{$userDir}/CNV2"));
$rnd = rand(1000000.0, 2000000.0);
$PANEL_DOWNLOAD = <<<PANEL
\t<!-- Panel: Download results -->
\t<div id="results-download" class="panel panel-default" style="display:none;">
\t\t<div class="panel-heading"><span class="glyphicon glyphicon-tree-deciduous"></span> Tree display</div>
\t\t<!-- Table -->
\t\t<table class="table" style="font-size:12.5px;">
\t\t\t<tr class="active"><td><input type="radio" name="results-tree-view" onclick="javascript:drawTree('clust.xml');" checked> <strong>Normalized read counts</strong> (<a target="_blank" href="{$userUrl}/clust.newick">newick</a> | <a target="_blank" href="{$userUrl}/clust.xml">xml</a> | <a target="_blank" href="{$userUrl}/clust.pdf">pdf</a> | <a target="_blank" href="{$userUrl}/clust.jpeg">jpeg</a>)</td></tr>
\t\t\t<tr class="active"><td><input type="radio" name="results-tree-view" onclick="javascript:drawTree('clust2.xml');"> <strong>Copy-number</strong> (<a target="_blank" href="{$userUrl}/clust2.newick">newick</a> | <a target="_blank" href="{$userUrl}/clust2.xml">xml</a> | <a target="_blank" href="{$userUrl}/clust2.pdf">pdf</a> | <a target="_blank" href="{$userUrl}/clust2.jpeg">jpeg</a>)</td></tr>
\t\t\t<tr class="active"><td><input type="radio" name="results-tree-view" onclick="javascript:drawTree('clust3.xml');"> <strong>Correlations</strong> (<a target="_blank" href="{$userUrl}/clust3.newick">newick</a> | <a target="_blank" href="{$userUrl}/clust3.xml">xml</a> | <a target="_blank" href="{$userUrl}/clust3.pdf">pdf</a> | <a target="_blank" href="{$userUrl}/clust3.jpeg">jpeg</a>)</td></tr>
\t\t</table>
\t</div>
\t<div id="results-download2" class="panel panel-default" style="display:none;">
\t\t<div class="panel-heading"><span class="glyphicon glyphicon-file"></span> Download processed data</div>
echo $group["name"];
?>
</code>
-->
<code class="file-creation"><?php
echo $creationDate->format("Y-m-d H:i:s");
?>
</code>
<!--
<code class="file-modification"><?php
echo $modificationDate->format("Y-m-d H:i:s");
?>
</code>
-->
<code class="file-size"><?php
echo humanFileSize($filesize, false);
?>
</code>
</li>
<?php
}
?>
</ul>
</div>
</div>
<div class="lastDiv"></div>
<templates>
<div class="row">
<div class="col-sm-3"><h4 id="uploadCase"><span class="glyphicon glyphicon-upload" aria-hidden="true"></span><span class="sr-only">Warning:</span> Select file to upload >>></h4></div>
<div class="col-sm-6"><input type="file" name="fileToUpload" id="fileToUpload"></div>
<div class="col-sm-3"><button name="submit" class="btn btn-warning btn-xs" value="uploading">Upload Package</button></div>
</div>
</div>
</form>
<?php
if ($handle = opendir($dir)) {
echo ' <table role="presentation" class="table table-striped"><tbody class="files">';
while (false !== ($file = readdir($handle))) {
if ($file != "." && $file != ".." && $file != ".gitignore") {
echo ' <tr class="template-download fade in">';
echo ' <td><span class="preview"></span></td>';
echo ' <td><p class="name">' . $file . '</p></td>';
echo ' <td><p class="size">' . humanFileSize(filesize($dir . $file), "KB") . '</p></td>';
echo ' <td style="width:220px"><form class="form" style="display:inline;" action="updater.php" method="post">';
echo ' <input type="hidden" name="input-file" value="' . $file . '">';
echo ' <button name="submit" class="btn btn-danger delete" style="width:95px" value="delete-file"><i class="glyphicon glyphicon-trash"></i> Delete</button></form>';
echo ' <form class="form" style="display:inline;" action="updateRunner.php" method="post"><input type="hidden" name="input-file" value="' . $file . '"><button name="submit" class="btn btn-primary" style="width:95px" value="update-sexigraf"><i class="glyphicon glyphicon-cog"></i> Upgrade</button>';
echo ' </form></td></tr>';
}
}
closedir($handle);
echo ' </tbody></table>';
}
if ($_SERVER['REQUEST_METHOD'] == 'POST') {
switch ($_POST["submit"]) {
case "uploading":
$errorUploadHappened = false;
if ($_FILES['fileToUpload']['error'] > 0) {
function php_file_tree_top_oldest($directory, $topn)
{
$display = array('wsp');
$files = new RecursiveIteratorIterator(new RecursiveDirectoryIterator($directory));
$data = array();
$php_file_tree = "";
foreach ($files as $file) {
$time = DateTime::createFromFormat('U', filemtime($file->getPathname()));
if (in_array($file->getExtension(), $display)) {
$data[] = array('filename' => $file->getPathname(), 'size' => $file->getSize(), 'time' => $time->getTimestamp());
}
}
usort($data, function ($a, $b) {
// sort by time oldest
return $a['time'] - $b['time'];
});
$i = 0;
$php_file_tree = "<ul class=\"php-file-tree\">";
foreach ($data as $key => $value) {
if (++$i == $topn) {
break;
}
$time = date('Y-m-d H:i:s', $value['time']);
$filenamevalue = $value['filename'];
$php_file_tree .= "<li class=\"pft-file\"><input type=\"checkbox\" name=\"pathChecked[]\" value=\"{$filenamevalue}\"> <strong>" . htmlspecialchars(str_replace($directory . "/", "", $value['filename'])) . "</strong> (" . humanFileSize($value['size']) . " | {$time})</li>";
}
$php_file_tree .= "</ul>";
return $php_file_tree;
}
$description = $_POST['description'];
// humanFileSize function to make bytes to KB/MB/GB unit
function humanFileSize($size, $unit = "")
{
if (!$unit && $size >= 1 << 30 || $unit == "GB") {
return number_format($size / (1 << 30), 2) . "GB";
}
if (!$unit && $size >= 1 << 20 || $unit == "MB") {
return number_format($size / (1 << 20), 2) . "MB";
}
if (!$unit && $size >= 1 << 10 || $unit == "KB") {
return number_format($size / (1 << 10), 2) . "KB";
}
return number_format($size) . " bytes";
}
$file_size = humanFileSize($file_size);
// check to see if file is already uploaded or file name is duplicate
if (file_exists($file_path)) {
$error[] = "File already exists";
}
// check to see if file is larger than 15MB
if ($file['size'] > 14865981) {
$error[] = "Sorry, your file is too large.";
}
if (!isset($error)) {
// if validation passes then move the uploaded file to target folder
if (move_uploaded_file($file_tmp, $file_path)) {
// give success message to the user
$success = "Your <strong>" . $file_name . "</strong> file has been uploaded.";
// escaping string avoiding SQL injection
$file_name = mysql_real_escape_string($file_name);
<span class="label label-primary"><i class="fa fa-file"></i> <?php
echo $filetype;
?>
</span>
<?php
if ($subfoldername) {
?>
<span class="label label-warning"><i class="fa fa-folder"></i><?php
echo ' ' . $subfoldername;
}
?>
</span>
</div>
<div class="font-s13 text-muted hidden-xs">
<p><?php
echo humanFileSize($filesrow['file_size']);
?>
</p>
</div>
</td>
<td class="visible-lg text-muted text-center"><em>Uploaded <?php
echo time_elapsed('@' . $filesrow['file_last_edit']);
?>
</em></td>
<td class="text-center">
<!-- NEW ACTIONS -->
<form method="post" action="files.php?u=<?php
echo $_GET['u'] . '&folder=' . $_GET['folder'];
?>
">
<input type="hidden" name="thisisfile" id="thisisfile" readonly value="<?php
<span class="col-md-2 download" data-size="<?php
echo $interface["in"];
?>
"><?php
echo humanFileSize($interface["in"], false);
?>
/s</span>
<label class="col-md-2"><?php
echo lang("index_network_upload_label");
?>
</label>
<span class="col-md-2 upload" data-size="<?php
echo $interface["out"];
?>
"><?php
echo humanFileSize($interface["out"], false);
?>
/s</span>
</div>
<?php
}
?>
<?php
}
?>
</fieldset>
</div>
</div>
</div>
$req = array('action' => 'sendMessage', 'data' => array('text' => 'Sorry, we can\'t find a file with that ID. Either a typo was made or it was deleted already.'));
}
}
break;
// list command
// list command
case '/list':
$count = $db->querySingle('SELECT COUNT(`id`) FROM `rfiles_bot` WHERE `uploader` = "' . $post['from']['id'] . '"');
if ($count == 0) {
$req['data']['text'] = 'You haven\'t shared any files yet.';
} else {
$files = $db->query('SELECT `id`,`file_name`,`file_size` FROM `rfiles_bot` WHERE `uploader` = "' . $post['from']['id'] . '"');
$req['data']['text'] = 'Your files : ' . "\n";
$i = 1;
while ($file = $files->fetchArray()) {
$req['data']['text'] .= $i . '. <a href="https://telegram.me/' . $config['bot_username'] . '?start=' . $file['id'] . '">' . htmlspecialchars($file['file_name']) . '</a> (' . humanFileSize($file['file_size']) . ') - <b>ID: ' . $file['id'] . '</b>' . "\n";
$i++;
}
}
$req['action'] = 'sendMessage';
$req['data']['parse_mode'] = 'html';
break;
// delete command
// delete command
case '/delete':
if (empty($ex[1])) {
$req['data']['text'] = "/delete <b><FILE ID></b>\nTo see FILE ID: /list";
} else {
$count = $db->querySingle('SELECT COUNT(`id`) FROM `rfiles_bot` WHERE `uploader` = "' . $post['from']['id'] . '" AND `id` = "' . SQLite3::escapeString($ex[1]) . '"');
if ($count == 0) {
$req['data']['text'] = 'Sorry, you haven\'t a file with that <b>ID</b>';
<?php
require __DIR__ . '/../vendor/autoload.php';
include 'ExampleTools.php';
$consumerKey = $_SERVER['argv'][1];
$consumerSecret = $_SERVER['argv'][2];
$accessToken = $_SERVER['argv'][3];
$tokenSecret = $_SERVER['argv'][4];
$cloudPath = $_SERVER['argv'][5];
// Create a cloud api connection to copy
$ca = new \Barracuda\Copy\API($consumerKey, $consumerSecret, $accessToken, $tokenSecret);
print "Listing {$cloudPath}\n";
$children = $ca->listPath($cloudPath);
foreach ($children as $child) {
printf("%5.5s %10.10s ", $child->{"type"}, humanFileSize($child->{"size"}));
echo basename($child->{"path"}) . PHP_EOL;
}
<tr id="server-<?php
echo $server["vse_id"];
?>
" data-bandwidth="<?php
echo $server["vse_bandwidth"];
?>
">
<td><?php
echo $server["vse_label"];
?>
</td>
<td><?php
echo lang("servers_server_description");
?>
: <?php
echo str_replace("iB", "b", humanFileSize($server["vse_bandwidth"] * 8, false, 0));
?>
ps</td>
<td class="users text-right">0</td>
<td class="used-capacity">
<div class="progress">
<div class="progress-bar" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100"
style="width: 0%; text-shadow: -1px -1px 0 #888, 1px -1px 0 #888, -1px 1px 0 #888, 1px 1px 0 #888;">
<span style="position: relative; left: 2px;">0.0%</span>
</div>
</div>
</td>
</tr>
<?php
}
?>
<?php
include_once __DIR__ . '/../include.php';
include_once __DIR__ . '/lib_example.php';
// load production config
$config = (include_once __DIR__ . '/../../_clickhouse_config_product.php');
$cl = new ClickHouseDB\Cluster($config);
$cl->setScanTimeOut(2.5);
// 2500 ms
$cl->setSoftCheck(true);
if (!$cl->isReplicasIsOk()) {
throw new Exception('Replica state is bad , error=' . $cl->getError());
}
$tables = $cl->getTables();
foreach ($tables as $dbtable => $tmp) {
echo ">>> {$dbtable} :";
$size = $cl->getSizeTable($dbtable);
echo "\t" . humanFileSize($size) . "\n";
}
$table_for_truncate = 'target.events_sharded';
$result = $cl->truncateTable($table_for_truncate);
echo "Result:truncate table\n";
print_r($result);
echo "\n----\nEND\n";
// ----------------------------------------------------------------------
