$valid = false;
}
}
$op = substr($ni, 0, 3);
$mask = substr($ni, 3, strlen($ni));
$operator = '';
$region = '';
// foreach($data->* as $oper){
// foreach($data[$oper] as $oper2){
//
// if($oper2==$op){
// $operator = $oper;
// foreach($data[$oper][$oper2] as $reG){
// for($K = 0 ; $K < count($data[$oper][$oper2][$reG]); $K++){
// $A = intval( split('..',$data[$oper][$oper2][$reG][$K])[0] );
// $B = intval( split('..',$data[$oper][$oper2][$reG][$K])[1] );
// if($A<intval($mask)&&intval($mask)<$B){
// $region = $reG;
// return $region;
// }
// }
// }
// }
// }
// }
for ($i = 0; $i < count($data); $i++) {
echo $data[$i];
}
}
echo getReg('89164835827');
}
// no region selected
$region1 = "2:100-110";
$region2 = "2:137-137.8";
// header() TODO add refer to itself so one sees the arguments
} else {
$region1 = $args[$region_str . '1'];
$region2 = $args[$region_str . '2'];
}
if (isset($args[$hide_str])) {
$hide = $args[$hide_str];
} else {
$hide = 3;
}
$start1 = $end1 = $chr1 = $start2 = $end2 = $chr2 = 0;
getReg($region1, $chr1, $start1, $end1);
getReg($region2, $chr2, $start2, $end2);
// fetch loci
$db1 = $experiment1["db_name"];
$sql = 'select Name from ' . $db1 . '.locus
where Chr = ' . $chr1 . '
and cMorgan >= ' . $start1 . '
and cMorgan <= ' . $end1 . ';';
$loci_ex1 = get_only_loci_from_sql($sql, $experiment1['connection']);
$db2 = $experiment2["db_name"];
$sql = 'select Name from ' . $db2 . '.locus
where Chr = ' . $chr2 . '
and cMorgan >= ' . $start2 . '
and cMorgan <= ' . $end2 . ';';
$loci_ex2 = get_only_loci_from_sql($sql, $experiment2['connection']);
// Loci to genes
useDB($db1, $experiment1['connection']);
