/**
* Adds the missing instruments based on the visit_label
*
* @param Array $result containing visit_label info
* @param String $visit_label The name of the visit
*
* @return NULL
*/
function populateVisitLabel($result, $visit_label)
{
global $argv, $confirm;
// create a new battery object && new battery
$battery = new NDB_BVL_Battery();
// select a specific time point (sessionID) for the battery
$battery->selectBattery($result['ID']);
$timePoint = TimePoint::singleton($result['ID']);
$DB = Database::singleton();
$candidate = Candidate::singleton($result['CandID']);
$result_firstVisit = $candidate->getFirstVisit();
$isFirstVisit = false;
//adding check for first visit
if ($result_firstVisit == $visit_label) {
$isFirstVisit = true;
}
//To assign missing instruments to all sessions, sent to DCC or not.
$defined_battery = $battery->lookupBattery($battery->age, $result['subprojectID'], $timePoint->getCurrentStage(), $visit_label, $timePoint->getCenterID(), $isFirstVisit);
$actual_battery = $battery->getBattery($timePoint->getCurrentStage(), $result['subprojectID'], $visit_label);
$diff = array_diff($defined_battery, $actual_battery);
if (!empty($diff)) {
echo "\n CandID: " . $timePoint->getCandID() . " Visit Label: " . $timePoint->getVisitLabel() . "\nMissing Instruments:\n";
print_r($diff);
}
if ($confirm === true) {
foreach ($diff as $test_name) {
$battery->addInstrument($test_name);
}
}
unset($battery);
unset($timePoint);
}
}
}
//--------------------------------------------------
// get candidate data
if (!empty($_REQUEST['candID'])) {
try {
$candidate =& Candidate::singleton($_REQUEST['candID']);
$tpl_data['candidate'] = $candidate->getData();
} catch (Exception $e) {
$tpl_data['error_message'][] = $e->getMessage();
}
}
// get time point data
if (!empty($_REQUEST['sessionID'])) {
try {
$timePoint =& TimePoint::singleton($_REQUEST['sessionID']);
if ($config->getSetting("SupplementalSessionStatus")) {
$tpl_data['SupplementalSessionStatuses'] = true;
}
$tpl_data['timePoint'] = $timePoint->getData();
} catch (Exception $e) {
$tpl_data['error_message'][] = "TimePoint Error (" . $_REQUEST['sessionID'] . "): " . $e->getMessage();
}
}
//--------------------------------------------------
// load the menu or instrument
try {
$caller =& NDB_Caller::singleton();
$workspace = $caller->load($TestName, $subtest);
if (isset($caller->page->FormAction)) {
$tpl_data['FormAction'] = $caller->page->FormAction;
/**
* returns an array of missing instruments for the timepoint
*
* @param int valid timepoint's sessionID, field session.ID
* @param string dateType, type of date to change
* @param string date, new date to use to define the battery
* @return array list of missing instruments
* @throws PEAR error
*/
function diagnose($sessionID, $dateType = null, $newDate = null)
{
// check args: sessionID
if (empty($sessionID)) {
return PEAR::raiseError("Error, SessionID missing!");
}
// check args: dateType and newDate
if (!empty($dateType) || !empty($newDate)) {
// check the args
if (empty($dateType) || !in_array($dateType, array('dob', 'edc', 'screening', 'visit')) || empty($newDate) || in_array($dateType, array('screening', 'visit')) && empty($sessionID)) {
return PEAR::raiseError("Please pass a valid set of arguments\n");
}
// check the date format (redundant)
$dateArray = explode('-', $newDate);
if (!is_array($dateArray) || !checkdate($dateArray[1], $dateArray[2], $dateArray[0])) {
return PEAR::raiseError("Invalid Date! Please use the following format: YYYY-MM-DD \n");
}
unset($dateArray);
}
// create timepoint object
$timePoint =& TimePoint::singleton($sessionID);
if (PEAR::isError($timePoint)) {
return PEAR::raiseError("Failed to create timepoint object: " . $timePoint->getMessage());
}
// candidate object - needed to get the dob/edc
// $candidate =& Candidate::singleton($timePoint->getCandID());
// if (PEAR::isError($candidate)) {
// return PEAR::raiseError("Error, failed to create candidate object:\n".$candidate->getMessage());
// }
// get the statuses and dates of the screening and visit stages to decide what to do w/ each of them
$stageList['screening']['status'] = $timePoint->getScreeningStatus();
$stageList['screening']['date'] = $timePoint->getDateOfScreening();
$stageList['visit']['status'] = $timePoint->getVisitStatus();
$stageList['visit']['date'] = $timePoint->getDateOfVisit();
$subProjectID = $timePoint->getSubprojectID();
// define the date of birth to use (dob or edc)
if ($dateType == 'dob' && $subProjectID == 1 || $dateType == 'edc' && $subProjectID == 2) {
$dateBirth = $newDate;
} else {
$dateBirth = $timePoint->getEffectiveDateOfBirth();
}
// check if the timepoint is started before attempting to make changes to it
if ($timePoint->getCurrentStage() == 'Not Started' || empty($stageList['screening']['status'])) {
return PEAR::raiseError("Error: Cannot diagnose the non-started timepoints!");
}
// check the subProjectID
if (empty($subProjectID)) {
return PEAR::raiseError("SubProjectID ({$subProjectID}) is empty for timepoint ({$sessionID})");
}
// initialize the array
$missingInstruments = array();
// check/diagnose the battery for each stage
foreach ($stageList as $stage => $stageData) {
// if the stage is started
if (!empty($stageData['status'])) {
$dateOfStage = !empty($newDate) && strtolower($dateType) == $stage ? $newDate : $stageList[$stage]['date'];
// compute subject age for the current stage
$ageArray = Utility::calculateAge($dateBirth, $dateOfStage);
$age = ($ageArray['year'] * 12 + $ageArray['mon']) * 30 + $ageArray['day'];
if ($age < 0) {
$age = 0;
}
unset($ageArray);
fwrite(STDERR, "Age at {$stage}: {$age} [ {$dateBirth} {$dateOfStage}]\n");
// create battery object
$battery =& new NDB_BVL_Battery();
if (PEAR::isError($battery)) {
return PEAR::raiseError("Failed to create battery object:\n" . $battery->getMessage());
}
// set the SessionID for the battery
$success = $battery->selectBattery($sessionID);
if (PEAR::isError($success)) {
return PEAR::raiseError("Error, failed to setup the battery for '{$sessionID}': " . $success->getMessage());
}
// get the existing battery for the stage
$existingTests = $battery->getBattery($stage);
if (PEAR::isError($existingTests)) {
return PEAR::raiseError("Error, failed to get the existing battery: " . $existingTests->getMessage());
}
// determine the correct list of instruments
$neededTests = Utility::lookupBattery($age, $stage);
if (PEAR::isError($neededTests)) {
return PEAR::raiseError("Error, failed to get the needed battery: " . $neededTests->getMessage());
}
// get the differnce between the two batteries
$difference = array_diff($neededTests, $existingTests);
// add to array to missing instruments
$missingInstruments = array_merge($missingInstruments, $difference);
// unset vars and objects
unset($battery);
unset($neededTests);
unset($existingTests);
unset($age);
unset($difference);
}
}
// end foreach
return $missingInstruments;
}
public function during(Duration $duration)
{
$begin = new TimePoint($this->year, $this->month, $this->day, 0, 0);
$end = $begin->plus($duration);
return new DateInterval($begin->getDate(), $end->getDate());
}
public function isEquals(TimePoint $point)
{
return $this->date->isEquals($point->getDate()) && $this->time->isEquals($point->getTimeOfDay());
}
/**
* Create a new timepoint
*
* This is a wrapper around the Timepoint::createNew function
* that can be stubbed out for testing.
*
* @param integer $CandID The candidate with the visit
* @param integer $subprojectID The subproject for the new visit
* @param string $VL The visit label of the visit to
* be created
*
* @return none
*/
function createNew($CandID, $subprojectID, $VL)
{
\TimePoint::createNew($CandID, $subprojectID, $VL);
}
/**
* Compares the TimePoint with another instance.
* The comparison is made in this order:
* - reference
* - target
* - timestamp
* - type
*
* CAUTION!: The result order is not based on chronological order.
* Its goal is to gather TimePoint by reference and target, then sort by type and timestamp.
*
* @param TimePoint $point
* @return int
*/
public function compare(TimePoint $point)
{
$diff = strcmp($this->getRef(), $point->getRef());
if ($diff == 0) {
$diff = $this->getTarget() - $point->getTarget();
if ($diff == 0) {
$diff = $this->getNormalizedTimestamp() - $point->getNormalizedTimestamp();
if ($diff == 0) {
$diff = $this->getType() - $point->getType();
}
}
}
return $diff;
}