public function fixSearchName($term)
{
require_once 'ServiceUtil.php';
$util = new ServiceUtil();
$newName = $term;
$searchName = $term;
if (strcasecmp($searchName, "cell") == 0) {
$newName = $searchName;
} else {
if (strcasecmp($searchName, "neuron") == 0) {
$newName = $searchName;
} else {
if ($util->endsWith($searchName, "%20cell")) {
$tempName = substr($searchName, 0, strlen($searchName) - strlen("%20cell"));
$newName = $tempName;
} else {
if ($util->endsWith($searchName, "%20neuron")) {
$tempName = substr($searchName, 0, strlen($searchName) - strlen("%20neuron"));
$newName = $tempName;
}
}
}
}
return $newName;
}
private function handleDataSpace(&$data, $searchName)
{
//require_once 'Globals.php';
require_once 'ServiceUtil.php';
$util = new ServiceUtil();
$newName = $searchName;
if (strcasecmp($searchName, "cell") == 0) {
$newName = $searchName;
} else {
if (strcasecmp($searchName, "neuron") == 0) {
$newName = $searchName;
} else {
if ($util->endsWith($searchName, "%20cell")) {
$tempName = substr($searchName, 0, strlen($searchName) - strlen("%20cell"));
$newName = $tempName;
} else {
if ($util->endsWith($searchName, "%20neuron")) {
$tempName = substr($searchName, 0, strlen($searchName) - strlen("%20neuron"));
$newName = $tempName;
}
}
}
}
//echo "<p>----------------NewName:".$newName;
$source_search_result = array();
$sources = $data["config_array"]->sources;
$category_to_source = $data["category_to_source"];
$categories = $data["config_array"]->categories;
$category_count_array = array();
foreach ($sources as $source) {
$source_search_result[$source->curie] = $util->searchWithinSource($newName, $source->curie, 20, 0);
}
foreach ($categories as $category) {
$category_count_array[$category] = 0;
$categorySources = $category_to_source[$category];
foreach ($categorySources as $csource) {
$sourceResult = $source_search_result[$csource->curie];
if (!is_null($sourceResult)) {
$category_count_array[$category] = $category_count_array[$category] + $sourceResult->result->resultCount;
}
}
}
$data["source_search_result"] = $source_search_result;
//var_dump($category_count_array);
$data["category_count_array"] = $category_count_array;
}
public function view($sourceID, $term, $pageID)
{
//require_once 'JsonClientUtil.php';
//require_once 'Config.php';
require_once 'ServiceUtil.php';
require_once 'Config.php';
$util = new ServiceUtil();
$myConfig = new Config();
$myConfig->loadJsonConfig($data);
$data['test'] = NULL;
$term = str_replace("_", "%20", $term);
$newName = $term;
$searchName = $term;
if (strcasecmp($searchName, "cell") == 0) {
$newName = $searchName;
} else {
if (strcasecmp($searchName, "neuron") == 0) {
$newName = $searchName;
} else {
if ($util->endsWith($searchName, "%20cell")) {
$tempName = substr($searchName, 0, strlen($searchName) - strlen("%20cell"));
$newName = $tempName;
} else {
if ($util->endsWith($searchName, "%20neuron")) {
$tempName = substr($searchName, 0, strlen($searchName) - strlen("%20neuron"));
$newName = $tempName;
}
}
}
}
$offset = 0;
//echo "\nSourceID------".$sourceID;
//echo "\nTerm:".$term;
if (!isset($pageID) || $pageID <= 1) {
$offset = 0;
} else {
$offset = ($pageID - 1) * 20;
}
//echo "---------------".$newName;
$data['resultObj'] = $util->searchWithinSource($newName, $sourceID, 20, $offset);
// $data['resultObj'] = searchWithinSource2($term, $sourceID, 20,$offset);
/*if(endsWith($term, "%20cell"))
{
$tempName = substr($term, 0, strlen($term)-strlen("%20cell"));
//echo "-------------tempName:".$tempName."----".strlen($term)."--------";
$tempResult = searchWithinSource2($tempName, $sourceID, 20,$offset);
if($tempResult->result->resultCount > $data['resultObj']->result->resultCount)
$data['resultObj'] = $tempResult;
}*/
$data['sourceID'] = $sourceID;
$data['pageID'] = $pageID;
$data['term'] = $term;
$protocol = "http";
if (isset($_SERVER['HTTPS'])) {
$protocol = "https";
}
$surl = $protocol . "://" . $_SERVER['SERVER_NAME'] . "/" . Config::$localContextName . "/resources/source_description/" . $sourceID;
//echo "\n".$surl;
$responseCode = @get_headers($surl);
//echo "CODE:".$file_headers[0]."---------";
if ($responseCode[0] == 'HTTP/1.1 404 Not Found') {
$data['description'] = "";
} else {
$data['description'] = file_get_contents($surl);
}
//var_dump($data['resultObj']);
$data['page_title'] = "Search:" . str_replace("%20", " ", $term);
$data['enable_config'] = true;
$this->load->view('templates/header2', $data);
$this->load->view('pages/resultDisplay', $data);
$this->load->view('templates/footer2', $data);
}
private function handleDataSpace(&$data, $searchName)
{
//require_once 'Globals.php';
require_once 'ServiceUtil.php';
$util = new ServiceUtil();
$newName = $searchName;
if (strcasecmp($searchName, "cell") == 0) {
$newName = $searchName;
} else {
if (strcasecmp($searchName, "neuron") == 0) {
$newName = $searchName;
} else {
if ($util->endsWith($searchName, "%20cell")) {
$tempName = substr($searchName, 0, strlen($searchName) - strlen("%20cell"));
$newName = $tempName;
} else {
if ($util->endsWith($searchName, "%20neuron")) {
$tempName = substr($searchName, 0, strlen($searchName) - strlen("%20neuron"));
$newName = $tempName;
}
}
}
}
//echo "<p>----------------NewName:".$newName;
$source_search_result = array();
$sources = $data["config_array"]->sources;
$category_to_source = $data["category_to_source"];
$categories = $data["config_array"]->categories;
$category_count_array = array();
foreach ($sources as $source) {
$source_search_result[$source->curie] = $util->searchWithinSource($newName, $source->curie, 20, 0);
}
foreach ($categories as $category) {
$category_count_array[$category] = 0;
$categorySources = $category_to_source[$category];
foreach ($categorySources as $csource) {
$sourceResult = $source_search_result[$csource->curie];
if (!is_null($sourceResult)) {
$category_count_array[$category] = $category_count_array[$category] + $sourceResult->result->resultCount;
}
}
}
$data["source_search_result"] = $source_search_result;
//var_dump($category_count_array);
$data["category_count_array"] = $category_count_array;
$data['cilImages'] = array();
$data['originalCILImages'] = array();
$data['neuroMorphoImages'] = array();
foreach ($sources as $source) {
if ($source->has_images) {
$tempImages = $util->getImageArray($source_search_result[$source->curie], 20);
if (strcmp($source->curie, "nif-0000-37639-1") == 0) {
$data['originalCILImages'] = $tempImages;
//echo "------originalCILImages source:".$source->curie;
} else {
if (strcmp($source->curie, "nif-0000-00006-1") == 0) {
$data['neuroMorphoImages'] = $tempImages;
//echo "------neuroMorphoImages source:".$source->curie;
}
}
$data['cilImages'] = array_merge($tempImages, $data['cilImages']);
}
}
$imageGallery = array();
if (strcmp($data['title'], "Neocortical pyramidal cell") == 0) {
$gimage = " <a href=\"http://celltypes.brain-map.org/mouse/experiment/morphology/330080937\" target=\"_blank\">" . " <img width=\"84\" height=\"100\" src=\"http://celltypes.brain-map.org/cgi-bin/imageservice?path=/external/mousecelltypes/prod210/specimen_324466858/min_xy_324466858.aff&mime=2\"/>" . " </a>";
array_push($imageGallery, $gimage);
}
if (count($data['originalCILImages']) > 0) {
array_push($imageGallery, $data['originalCILImages'][0]);
}
if (count($data['originalCILImages']) > 1) {
array_push($imageGallery, $data['originalCILImages'][1]);
}
if (count($data['neuroMorphoImages']) > 0) {
foreach ($data['neuroMorphoImages'] as $gimage) {
array_push($imageGallery, $gimage);
if (count($imageGallery) == 3) {
break;
}
}
}
if (count($data['originalCILImages']) > 2) {
$cindex = 0;
foreach ($data['originalCILImages'] as $gimage) {
if (count($imageGallery) == 3) {
break;
}
if ($cindex > 1) {
array_push($imageGallery, $gimage);
}
$cindex++;
}
}
$data['imageGallery'] = $imageGallery;
/*
$data['neuroElectroResult'] = searchWithinSource($newName, $neuroElectro, 20);
$data['neuroMorphoResult'] = searchWithinSource($newName, $neuroMorpho, 20);
$data['genSatResult'] = searchWithinSource($newName, $genSat, 20);
$data['neuronDBResult'] = searchWithinSource($newName, $neuronDB, 20);
$data['humanBrainResult'] = searchWithinSource($newName, $humanBrainAtlas, 20);
$data['olfactoryMapResult'] = searchWithinSource($newName, $OlfactoryMap, 20);
$data['abaMorphoResult'] = searchWithinSource($newName, $abaMorpho, 20);
$data['abaCellResult'] = searchWithinSource($newName, $abaCell, 20);
$data['brainMapResult'] = searchWithinSource($newName, $brainMap, 20);
$data['connectivityResult'] = searchWithinSource($newName, $connectivity, 20);
$data['humanBrainProjectResult'] = searchWithinSource($newName, $humanBrainProject, 20);
$data['neuroMLResult'] = searchWithinSource($newName, $neuroML, 20);
$data['modelDBResult'] = searchWithinSource($newName, $modelDB, 20);
$data['brainModelResult'] = searchWithinSource($newName, $brainModel, 20);
$data['cilResult'] = searchWithinSource($searchName, $CIL, 20);
$data['cilImages'] = getImageArray($data['cilResult'], 20);
$data['neuroMorphoImages'] = getImageArray($data['neuroMorphoResult'], 20);
$data['originalCILImages'] = $data['cilImages'];
$data['cilImages'] = array_merge($data['cilImages'], $data['neuroMorphoImages']);*/
}