/**
* Run the database seeds.
*
* @return void
*/
public function run()
{
Eloquent::unguard();
//DB::table('Simulation_Needle_Parameter')->delete();
//DB::table('Simulation_Needle')->delete();
//DB::table('PointSet')->delete();
//DB::table('Simulation')->delete();
$development = Modality::whereName("Development")->first();
if (!$development) {
$development = Modality::create(array("Name" => "Development"));
}
App::make("SimulationSeeder")->clean();
//App::make("SimulationSeeder")->deepClean();
App::make("\\CombinationSeeders\\CombinationSeeder")->clean($this->command);
DB::table('Parameter_Attribution')->delete();
DB::table('Numerical_Model_Region')->delete();
//DB::table('Region')->delete();
//DB::table('Numerical_Model')->delete();
DB::table('Numerical_Model_Argument')->delete();
DB::table('Algorithm_Argument')->delete();
DB::table('Algorithm')->delete();
$sP = App::make("ParameterSeeder")->clean();
DB::table('Combination_Needle')->delete();
//DB::table('Combination')->delete();
//DB::table('Protocol')->delete();
//DB::table('Context')->delete();
DB::table('Needle_Power_Generator')->delete();
//DB::table('Needle')->delete();
//DB::table('Power_Generator')->delete();
//DB::table('Modality')->delete();
DB::table('Argument')->delete();
//DB::table('Parameter')->delete();
$this->call('ParameterSeeder');
$this->call('RegionSeeder');
if (!Config::get('gosmart.context_as_enum')) {
$this->call('\\ContextSeeders\\ContextSeeder');
}
$this->call('\\CombinationSeeders\\CombinationSeeder');
$developmentModels = $development->NumericalModels;
$developmentModels->each(function ($m) {
$m->attribute(['Name' => 'DEVELOPMENT', 'Type' => 'boolean', 'Value' => "true"]);
});
$this->call('ValueSeeder');
$this->call('AlgorithmSeeder');
//if (Simulation::count() == 0)
$this->call('SimulationSeeder');
}
/**
* Display a listing of the resource.
*
* @return Response
*/
public function index()
{
if (file_exists(public_path() . '/backups')) {
$backups = array_filter(scandir(public_path() . '/backups'), function ($d) {
return $d[0] != '.';
});
} else {
$backups = [];
}
$preferred_server = Session::get('preferred_server', '');
if (Input::has('modality')) {
$simulations = Simulation::where('Power_Generator.Modality_Id', '=', Input::get('modality'))->get();
} else {
$simulations = Simulation::all();
}
$modalities = Modality::all();
return View::make('simulations.index', compact('simulations', 'backups', 'preferred_server', 'modalities'));
}
/**
* Run the database seeds.
*
* @return void
*/
public function run()
{
Eloquent::unguard();
$algorithmsXmls = File::allFiles(public_path() . '/algorithms');
foreach ($algorithmsXmls as $algorithmsXml) {
$dom = new DomDocument();
$dom->load($algorithmsXml);
$root = $dom->documentElement;
$modality = Modality::whereName($root->getAttribute('modality'))->first();
if (empty($modality)) {
throw new Exception("Could not find modality! ({$algorithmsXml})");
}
$protocolName = $root->getAttribute('protocol');
$protocol = Protocol::whereName($protocolName)->whereModalityId($modality->Id)->first();
if (empty($protocol)) {
\Log::warning("Could not find protocol! ({$algorithmsXml})");
continue;
}
$arguments = [];
$parameters = [];
$description = "";
foreach ($root->childNodes as $node) {
if (get_class($node) == 'DOMText') {
continue;
}
switch ($node->nodeName) {
case 'arguments':
foreach ($node->childNodes as $argument) {
if (get_class($argument) == 'DOMText') {
continue;
}
$arguments[] = ['Name' => $argument->getAttribute('name')];
}
break;
case 'parameters':
foreach ($node->childNodes as $parameter) {
if (get_class($parameter) == 'DOMText') {
continue;
}
$parameters[] = ['Name' => $parameter->getAttribute('name'), 'Type' => $parameter->getAttribute('type'), 'Value' => $parameter->hasAttribute('value') ? $parameter->getAttribute('value') : null];
}
break;
case 'description':
$description = $node->textContent;
break;
default:
throw new Exception("Unrecognized entry in algorithm XML - {$node->nodeName}! ({$algorithmsXml})");
}
}
$algorithm = new Algorithm();
$algorithm->content = $description;
$resultName = $root->getAttribute('result');
$resultType = $root->getAttribute('type');
$result = Parameter::whereName($resultName)->first();
if (empty($result)) {
$result = Parameter::create(['Name' => $resultName, 'Type' => $resultType]);
}
$algorithm->result()->associate($result);
$algorithm->protocol()->associate($protocol);
$algorithm->save();
foreach ($arguments as $argument) {
$algorithm->arguments()->attach(Argument::create($argument));
}
foreach ($parameters as $parameter) {
$algorithm->attribute($parameter);
}
}
}
/**
* Display a listing of the resource.
*
* @return Response
*/
public function index()
{
$combinations = Combination::with('PowerGenerator');
if (Input::has('Needle_Id')) {
$combinations = $combinations->join('Combination_Needle', 'Combination_Needle.Combination_Id', '=', 'Combination.Combination_Id');
$combinations->whereNeedleId(Input::get('Needle_Id'));
}
if (Input::has('Numerical_Model_Id')) {
$combinations->whereNumericalModelId(Input::get('Numerical_Model_Id'));
}
if (Input::has('Power_Generator_Id')) {
$combinations->wherePowerGeneratorId(Input::get('Power_Generator_Id'));
}
if (Input::has('Protocol_Id')) {
$combinations->whereProtocolId(Input::get('Protocol_Id'));
}
if (Input::has('Context_Id')) {
if (Config::get('gosmart.context_as_enum')) {
$combinations->where(Context::$idField, '=', Input::get('Context_Id'));
} else {
$combinations->whereContextId(Input::get('Context_Id'));
}
}
if (Input::has('Modality_Id')) {
$modality_id = Input::get('Modality_Id');
$combinations->whereHas('PowerGenerator', function ($query) use($modality_id) {
$query->whereModalityId($modality_id);
});
}
if (Input::has('output')) {
switch (Input::get('output')) {
case 'Needle':
$combination = $combinations->join('Combination_Needle', 'Combination_Needle.Combination_Id', '=', 'Combination.Combination_Id');
$output_ids = array_unique($combinations->get()->lists('Needle_Id'));
return Needle::find($output_ids)->lists('Name', 'Id');
case 'Combination':
return $combinations->get()->lists('asString', 'Combination_Id');
case 'Protocol':
$output_ids = array_unique($combinations->get()->lists('Protocol_Id'));
return Protocol::find($output_ids)->lists('Name', 'Id');
case 'PowerGenerator':
$output_ids = array_unique($combinations->get()->lists('Power_Generator_Id'));
return PowerGenerator::find($output_ids)->lists('Name', 'Id');
case 'NumericalModel':
$output_ids = array_unique($combinations->get()->lists('Numerical_Model_Id'));
return NumericalModel::find($output_ids)->lists('Name', 'Id');
case 'Context':
if (Config::get('gosmart.context_as_enum')) {
$output_ids = array_unique($combinations->get()->lists('Context_Id'));
} else {
$output_ids = array_unique($combinations->get()->lists('OrganType'));
}
return Context::find($output_ids)->lists('Name', 'Id');
case 'Modality':
$combinations = $combinations->join('Power_Generator', 'Power_Generator.Id', '=', 'Combination.Power_Generator_Id')->select('Power_Generator.Modality_Id AS Modality_Id');
$output_ids = array_unique($combinations->get()->lists('Modality_Id'));
return Modality::find($output_ids)->lists('Name', 'Id');
}
return $combinations;
}
$combinations = $combinations->get()->sortBy(function ($c) {
return $c->Power_Generator->Modality->Name;
});
return View::make('combinations.index', compact('combinations'));
}
/**
* Show the form for creating a new resource.
*
* @return Response
*/
public function create()
{
$modalities = Modality::all()->lists('Name', 'Id');
return View::make('protocols.create', compact('modalities'));
}
