function includeAllData($pack)
{
extract($pack);
$element2query = $element2query == '' ? $s3ql['from'] : $element2query;
#echo '<pre>';print_r($data);exit;
$letter = letter($element2query);
$element = $GLOBALS['s3codes'][$letter];
if ($user_id != '1') {
if (count($data) >= 4) {
if (!ereg('^U|^G', $letter)) {
$Z = compact('user_id', 'db', 'uidQuery', 'timer', 'WhereInfo', 'shared_with_query');
$Z['toFind'] = $letter;
$Z['shared_with_user'] = '******' . $user_id;
$ids = permissionPropagation($Z);
}
}
}
if (ereg('^U|^G', $letter) && $WhereInfo) {
$whereId = array_keys($WhereInfo);
if (count($whereId) > 1) {
$array = array();
return $array;
} else {
$whereId = $whereId[0];
#Tlist provides the list of resources that are shared with the uid of interest, including users & groups
$Hlist = bottom_up_propagation_list($whereId, $db);
$Tlist = user_included_bottom_up_propagation_list('U', $whereId, $user_id, $db);
$resourceUsers = s3dbPercolate($Hlist, $Tlist, $letter);
if ($_REQUEST['su3d']) {
}
}
}
##Remove from data the uids that do not exist in ids
$str = $GLOBALS['s3ids'][$GLOBALS['s3codes'][$letter]];
$re_issued = array();
if (is_array($data)) {
foreach ($data as $ind => $array) {
$uid = $letter . $array[$str];
if ($uid != '') {
if ($user_id != '1') {
if (is_array($ids)) {
if (!ereg('^U|^G', $letter)) {
if ($ids[$uid] != '') {
$array['acl'] = $ids[$uid];
} else {
$array = array();
}
} else {
if ($resourceUsers) {
if (in_array($uid, array_keys($resourceUsers))) {
$array['permissionOnResource'] = $resourceUsers[$uid];
} else {
$array = array();
}
}
#else {
# $array=array();
#}
}
} else {
$strictuid = 1;
$strictsharedwith = 1;
$shared_with = 'U' . $user_id;
$P = compact('uid', 'shared_with', 'user_id', 'db', 'strictuid', 'strictsharedwith', 'stream', 'timer');
if (!ereg('^U|^G', $letter)) {
$array['acl'] = permission4Resource($P);
$array['permission_level'] = $array['acl'];
$permission2user = permissionModelComp($array['permission_level']);
$isOwner = $array['created_by'] == $user_id;
$array['view'] = allowed($permission2user, 0, $isOwner);
$array['change'] = allowed($permission2user, 1, $isOwner);
$array['propagate'] = allowed($permission2user, 2, $isOwner);
#create the element "delete", in case it is eventually created...For now it is the same as change
$array['delete'] = $array['change'];
$array['add_data'] = $array['propagate'];
$array['delete_data'] = $array['add_data'];
} else {
if ($resourceUsers) {
if (in_array($uid, array_keys($resourceUsers))) {
$array['permissionOnResource'] = $resourceUsers[$uid];
} else {
$array = array();
}
}
#else {
# $array=array();
#}
}
}
} else {
$array['acl'] = 'yyy';
if (ereg('^U|^G', $letter) && $resourceUsers) {
if ($resourceUsers) {
if (in_array($uid, array_keys($resourceUsers))) {
$array['permissionOnResource'] = $resourceUsers[$uid];
} else {
$array = array();
}
}
#else {
# $array=array();
#}
}
}
}
if (!empty($array)) {
$re_issued[$uid] = $array;
$element_info = $re_issued[$uid];
$info = $WhereInfo;
$C = compact('letter', 'info', 'elements', 'element_info', 'user_id', 'db', 'key', 'timer', 'model');
$element_info = include_all($C);
$element_info['uri'] = S3DB_URI_BASE . '/' . $letter . $array[$str];
#$element_info['uri'] = str_replace('central', 'TCGA', S3DB_URI_BASE.'/'.$letter.$array[$str]);
$pack['uid'] = $uid;
$pack['info'] = $element_info;
$element_info = filterDataForQuery($pack);
if ($timer) {
$timer->setMarker('Filter Data For The Query');
}
$re_issued[$uid] = $element_info;
}
}
}
$data = array_values(array_filter($re_issued));
return $data;
}
function s3dbPercolate($Tlist, $X, $toFind, $result = array(), $u = 1, $state = 3, $model = 'nsy', $timer = array())
{
##OLD OLD
#Percolate performs the same function as calc, except that it does it with the transverse matrix. That way, all the children's pl may be calculated at once
global $timer;
##Start by reading Tlist from file
if (is_file($Tlist)) {
$T = unserialize(file_get_contents($Tlist));
unlink($Tlist);
$Tlist = $T;
}
if (is_array($X)) {
foreach ($X as $a => $b) {
#recover the ids that are to be matched at the end
if (ereg('^' . $toFind, $a, $m)) {
if ($result[$a]) {
$result[$a] = s3dbMerge(array($result[$a], $b), $state, $model);
} else {
$result[$a] = $b;
}
}
}
}
#to save time, assign local permissions when they exist
if (is_array($Tlist)) {
foreach ($Tlist as $parent => $children) {
#migrate permission from $parent to $children
if ($timer) {
$timer->setMarker('Propagationg permisions for ' . $parent);
}
if ($X[$parent]) {
$s = s3dbMigrate($X[$parent]);
list($x_self, $x_next) = $s;
if (is_array($children)) {
$hasChild++;
foreach ($children as $child) {
#$b are the X that propagate towards $a
if ($x_next) {
//let's merge this child with existing results
if (!$X1[$child]) {
//child might have 2 parents in the same iteration (for example, one collection shared by 2 P
$X1[$child] = $x_next;
} else {
$X1[$child] = s3dbMerge(array($X1[$child], $x_next), $state, $model);
}
}
}
}
}
}
}
if ($hasChild != 0 && $u <= 10 && is_array($X1)) {
$u++;
##Now put Tlist back in a file so that it saves CPU
$T = $GLOBALS['s3db_info']['server']['db']['uploads_folder'] . $GLOBALS['s3db_info']['server']['db']['uploads_file'] . '/Hlist' . random_string(10);
if (!@file_put_contents($T, serialize($Tlist))) {
$T = $Tlist;
}
if ($timer) {
$timer->setMarker('Going to iteration ' . $u);
}
$result = s3dbPercolate($T, $X1, $toFind, $result, $u, $state, $model, $timer);
}
return $result;
}
