/**
* Called on plugin activation and upgrading.
*
* @see register_activation_hook
*/
function openid_activate_plugin()
{
global $nxt_rewrite;
// if first time activation, set OpenID capability for administrators
if (get_option('openid_plugin_revision') === false) {
global $nxt_roles;
$role = $nxt_roles->get_role('administrator');
if ($role) {
$role->add_cap('use_openid_provider');
}
}
// for some reason, show_on_front is not always set, causing is_front_page() to fail
$show_on_front = get_option('show_on_front');
if (empty($show_on_front)) {
update_option('show_on_front', 'posts');
}
// Add custom OpenID options
add_option('openid_enable_commentform', true);
add_option('openid_plugin_enabled', true);
add_option('openid_plugin_revision', 0);
add_option('openid_db_revision', 0);
add_option('openid_enable_approval', false);
add_option('openid_xrds_returnto', true);
add_option('openid_comment_displayname_length', 12);
openid_create_tables();
openid_migrate_old_data();
// setup schedule cleanup
nxt_clear_scheduled_hook('cleanup_openid');
nxt_schedule_event(time(), 'hourly', 'cleanup_openid');
// flush rewrite rules
if (!isset($nxt_rewrite)) {
$nxt_rewrite = new nxt_Rewrite();
}
$nxt_rewrite->flush_rules();
// set current revision
update_option('openid_plugin_revision', OPENID_PLUGIN_REVISION);
openid_remove_historical_options();
}
/**
* Check to see whether the nonce, association, and identity tables exist.
*
* @param bool $retry if true, tables will try to be recreated if they are not okay
* @return bool if tables are okay
*/
function openid_check_tables($retry=true) {
global $wpdb;
$ok = true;
$message = array();
$tables = array(
openid_identity_table(),
);
foreach( $tables as $t ) {
if( $wpdb->get_var("SHOW TABLES LIKE '$t'") != $t ) {
$ok = false;
$message[] = "Table $t doesn't exist.";
} else {
$message[] = "Table $t exists.";
}
}
if( $retry and !$ok) {
openid_create_tables();
$ok = openid_check_tables( false );
}
return $ok;
}
/**
* Called on plugin activation.
*
* @see register_activation_hook
*/
function openid_activate_plugin()
{
// if first time activation, set OpenID capability for administrators
if (get_option('openid_plugin_revision') === false) {
global $wp_roles;
$role = $wp_roles->get_role('administrator');
if ($role) {
$role->add_cap('use_openid_provider');
}
}
// Add custom OpenID options
add_option('openid_enable_commentform', true);
add_option('openid_plugin_enabled', true);
add_option('openid_plugin_revision', 0);
add_option('openid_db_revision', 0);
add_option('openid_enable_approval', false);
add_option('openid_enable_email_mapping', false);
add_option('openid_xrds_returnto', true);
add_option('openid_xrds_idib', true);
add_option('openid_xrds_eaut', true);
openid_create_tables();
openid_migrate_old_data();
wp_schedule_event(time(), 'hourly', 'cleanup_openid');
// cleanup old option names
delete_option('oid_db_revision');
delete_option('oid_db_version');
delete_option('oid_enable_approval');
delete_option('oid_enable_commentform');
delete_option('oid_enable_email_mapping');
delete_option('oid_enable_foaf');
delete_option('oid_enable_localaccounts');
delete_option('oid_enable_loginform');
delete_option('oid_enable_selfstyle');
delete_option('oid_enable_unobtrusive');
delete_option('oid_plugin_enabled');
delete_option('oid_plugin_revision');
delete_option('oid_plugin_version');
delete_option('oid_trust_root');
}
function openid_user_update($openid, $sreg)
{
openid_create_tables();
theDb()->query('INSERT IGNORE INTO eb_users (oid) values (?)', array($openid));
foreach (array('nickname', 'fullname', 'email') as $key) {
if (array_key_exists($key, $sreg)) {
theDb()->query("UPDATE eb_users SET {$key}=? WHERE oid=?", array($sreg[$key], $openid));
}
}
$user =& theDb()->getRow('SELECT * FROM eb_users WHERE oid=?', array($openid));
if (!strlen($user["nickname"])) {
$user["nickname"] = $user["fullname"];
}
if (!strlen($user["nickname"])) {
$user["nickname"] = $user["email"];
}
if (!strlen($user["nickname"])) {
$user["nickname"] = substr(md5($openid), 0, 8);
}
$_SESSION["user"] = $user;
}
<?php
include "lib/setup.php";
include "lib/openid.php";
evidence_create_tables();
openid_create_tables();
if ($_REQUEST["test-insert"]) {
if (!getCurrentUser("is_admin")) {
die("yours is not an admin account.");
}
header("Content-type: text/plain");
$variant_id = evidence_get_variant_id("NPHP4", 848, "Arg", "Trp", true);
$e = evidence_edit_id_generate(null, $variant_id);
evidence_save_draft($e, array("variant_impact" => "unknown", "variant_dominance" => "unknown", "summary_short" => "This variant has been found together with R682X as a compound heterozygote in three nephronophthisis and retinitis pigmentosa, (Senior-Loken syndrome) patients from one family."));
print "after evidence_save_draft\n";
print_r(theDb()->getRow("SELECT * FROM edits WHERE edit_id=?", array($e)));
evidence_submit($e);
print "after evidence_submit\n";
print_r(evidence_get_report("latest", $variant_id));
evidence_signoff($e);
$a = evidence_edit_id_generate(null, $variant_id);
evidence_save_draft($a, array("article_pmid" => 12205563, "summary_short" => "Otto, E. et al. A gene mutated in nephronophthisis and retinitis pigmentosa encodes a novel protein, nephroretinin, conserved in evolution. Am J Hum Genet 71, 1161-1167, doi:S0002-9297(07)60408-X [pii]"));
evidence_submit($a);
evidence_signoff($a);
$a = evidence_edit_id_generate(null, $variant_id);
evidence_save_draft($a, array("article_pmid" => 9734597, "summary_short" => "Lemmink, H. H. et al. Novel mutations in the thiazide-sensitive NaCl cotransporter gene in patients with Gitelman syndrome with predominant localization to the C-terminal domain. Kidney Int 54, 720-730, doi:10.1046/j.1523-1755.1998.00070.x (1998)."));
evidence_submit($a);
print "release:\n";
print_r(evidence_get_report("release", $variant_id));
print "latest:\n";
print_r(evidence_get_report("latest", $variant_id));
