/**
* Class-specific methods for published submissions.
* @param PublishedArticle $submission
* @param DOMElement $node
* @return PublishedArticle
*/
function populatePublishedSubmission($submission, $node)
{
$deployment = $this->getDeployment();
$issue = $deployment->getIssue();
$submission->setSequence($node->getAttribute('seq'));
$submission->setAccessStatus($node->getAttribute('access_status'));
$submission->setIssueId($issue->getId());
return $submission;
}
function importArticles()
{
assert($this->xml->name == 'articles');
$articleDAO =& DAORegistry::getDAO('ArticleDAO');
$articles = $articleDAO->getArticlesByJournalId($this->journal->getId());
$journalFileManager = new JournalFileManager($this->journal);
$publicFileManager =& new PublicFileManager();
$this->nextElement();
while ($this->xml->name == 'article') {
$articleXML = $this->getCurrentElementAsDom();
$article = new Article();
$article->setJournalId($this->journal->getId());
$article->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleXML->userId));
$article->setSectionId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_SECTION, (int) $articleXML->sectionId));
$article->setLocale((string) $articleXML->locale);
$article->setLanguage((string) $articleXML->language);
$article->setCommentsToEditor((string) $articleXML->commentsToEditor);
$article->setCitations((string) $articleXML->citations);
$article->setDateSubmitted((string) $articleXML->dateSubmitted);
$article->setDateStatusModified((string) $articleXML->dateStatusModified);
$article->setLastModified((string) $articleXML->lastModified);
$article->setStatus((int) $articleXML->status);
$article->setSubmissionProgress((int) $articleXML->submissionProgress);
$article->setCurrentRound((int) $articleXML->currentRound);
$article->setPages((string) $articleXML->pages);
$article->setFastTracked((int) $articleXML->fastTracked);
$article->setHideAuthor((int) $articleXML->hideAuthor);
$article->setCommentsStatus((int) $articleXML->commentsStatus);
$articleDAO->insertArticle($article);
$oldArticleId = (int) $articleXML->oldId;
$this->restoreDataObjectSettings($articleDAO, $articleXML->settings, 'article_settings', 'article_id', $article->getId());
$article =& $articleDAO->getArticle($article->getId());
// Reload article with restored settings
$covers = $article->getFileName(null);
if ($covers) {
foreach ($covers as $locale => $oldCoverFileName) {
$sourceFile = $this->publicFolderPath . '/' . $oldCoverFileName;
$extension = $publicFileManager->getExtension($oldCoverFileName);
$destFile = 'cover_issue_' . $article->getId() . "_{$locale}.{$extension}";
$publicFileManager->copyJournalFile($this->journal->getId(), $sourceFile, $destFile);
unlink($sourceFile);
$article->setFileName($destFile, $locale);
$articleDAO->updateArticle($article);
}
}
$articleFileManager = new ArticleFileManager($article->getId());
$authorDAO =& DAORegistry::getDAO('AuthorDAO');
foreach ($articleXML->author as $authorXML) {
$author = new Author();
$author->setArticleId($article->getId());
$author->setFirstName((string) $authorXML->firstName);
$author->setMiddleName((string) $authorXML->middleName);
$author->setLastName((string) $authorXML->lastName);
$author->setSuffix((string) $authorXML->suffix);
$author->setCountry((string) $authorXML->country);
$author->setEmail((string) $authorXML->email);
$author->setUrl((string) $authorXML->url);
$author->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $authorXML->userGroupId));
$author->setPrimaryContact((int) $authorXML->primaryContact);
$author->setSequence((int) $authorXML->sequence);
$authorDAO->insertAuthor($author);
$this->restoreDataObjectSettings($authorDAO, $authorXML->settings, 'author_settings', 'author_id', $author->getId());
unset($author);
}
$articleEmailLogDAO =& DAORegistry::getDAO('ArticleEmailLogDAO');
$emailLogsXML = array();
foreach ($articleXML->emailLogs->emailLog as $emailLogXML) {
array_unshift($emailLogsXML, $emailLogXML);
}
foreach ($emailLogsXML as $emailLogXML) {
$emailLog = new ArticleEmailLogEntry();
$emailLog->setAssocType(ASSOC_TYPE_ARTICLE);
$emailLog->setAssocId($article->getId());
$emailLog->setSenderId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $emailLogXML->senderId));
$emailLog->setDateSent((string) $emailLogXML->dateSent);
$emailLog->setIPAddress((string) $emailLogXML->IPAddress);
$emailLog->setEventType((int) $emailLogXML->eventType);
$emailLog->setFrom((string) $emailLogXML->from);
$emailLog->setRecipients((string) $emailLogXML->recipients);
$emailLog->setCcs((string) $emailLogXML->ccs);
$emailLog->setBccs((string) $emailLogXML->bccs);
$emailLog->setSubject((string) $emailLogXML->subject);
$emailLog->setBody((string) $emailLogXML->body);
$articleEmailLogDAO->insertObject($emailLog);
$this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $emailLogXML->oldId, $emailLog->getId());
}
$articleFileDAO =& DAORegistry::getDAO('ArticleFileDAO');
foreach ($articleXML->articleFile as $articleFileXML) {
try {
$articleFile = new ArticleFile();
$articleFile->setArticleId($article->getId());
$articleFile->setSourceFileId((int) $articleFileXML->sourceFileId);
$articleFile->setSourceRevision((int) $articleFileXML->sourceRevision);
$articleFile->setRevision((int) $articleFileXML->revision);
$articleFile->setFileName((string) $articleFileXML->fileName);
$articleFile->setFileType((string) $articleFileXML->fileType);
$articleFile->setFileSize((string) $articleFileXML->fileSize);
$articleFile->setOriginalFileName((string) $articleFileXML->originalFileName);
$articleFile->setFileStage((int) $articleFileXML->fileStage);
$articleFile->setAssocId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $articleFileXML->assocId));
$articleFile->setDateUploaded((string) $articleFileXML->dateUploaded);
$articleFile->setDateModified((string) $articleFileXML->dateModified);
$articleFile->setRound((int) $articleFileXML->round);
$articleFile->setViewable((int) $articleFileXML->viewable);
$articleFileDAO->insertArticleFile($articleFile);
$oldArticleFileId = (int) $articleFileXML->oldId;
$oldFileName = $articleFile->getFileName();
$stagePath = $articleFileManager->fileStageToPath($articleFile->getFileStage());
$fileInTransferPackage = $this->journalFolderPath . "/articles/{$oldArticleId}/{$stagePath}/{$oldFileName}";
$newFileName = $articleFileManager->generateFilename($articleFile, $articleFile->getFileStage(), $articleFile->getOriginalFileName());
$newFilePath = "/articles/" . $article->getId() . "/{$stagePath}/{$newFileName}";
$journalFileManager->copyFile($fileInTransferPackage, $journalFileManager->filesDir . $newFilePath);
unlink($fileInTransferPackage);
$articleFileDAO->updateArticleFile($articleFile);
$this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $oldArticleFileId, $articleFile->getFileId());
} catch (Exception $e) {
}
}
$articleFiles = $articleFileDAO->getArticleFilesByArticle($article->getId());
foreach ($articleFiles as $articleFile) {
try {
$articleFile->setSourceFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $articleFile->getSourceFileId()));
$articleFileDAO->updateArticleFile($articleFile);
} catch (Exception $e) {
}
}
$suppFileDAO =& DAORegistry::getDAO('SuppFileDAO');
foreach ($articleXML->suppFile as $suppFileXML) {
$suppFile =& new SuppFile();
$suppFile->setArticleId($article->getId());
$suppFile->setRemoteURL((string) $suppFileXML->remoteURL);
$suppFile->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $suppFileXML->fileId));
$suppFile->setType((string) $suppFileXML->type);
$suppFile->setDateCreated((string) $suppFileXML->dateCreated);
$suppFile->setLanguage((string) $suppFileXML->language);
$suppFile->setShowReviewers((int) $suppFileXML->showReviewers);
$suppFile->setDateSubmitted((string) $suppFileXML->dateSubmitted);
$suppFile->setSequence((int) $suppFileXML->sequence);
$suppFileDAO->insertSuppFile($suppFile);
$this->restoreDataObjectSettings($suppFileDAO, $suppFileXML->settings, 'article_supp_file_settings', 'supp_id', $suppFile->getId());
}
$articleCommentDAO =& DAORegistry::getDAO('ArticleCommentDAO');
foreach ($articleXML->articleComment as $articleCommentXML) {
$articleComment = new ArticleComment();
$articleComment->setArticleId($article->getId());
$articleComment->setAssocId($article->getId());
$articleComment->setCommentType((int) $articleCommentXML->commentType);
$articleComment->setRoleId((int) $articleCommentXML->roleId);
$articleComment->setAuthorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleCommentXML->authorId));
$articleComment->setCommentTitle((string) $articleCommentXML->commentTitle);
$articleComment->setComments((string) $articleCommentXML->comments);
$articleComment->setDatePosted((string) $articleCommentXML->datePosted);
$articleComment->setDateModified((string) $articleCommentXML->dateModified);
$articleComment->setViewable((int) $articleCommentXML->viewable);
$articleCommentDAO->insertArticleComment($articleComment);
}
$articleGalleyDAO =& DAORegistry::getDAO('ArticleGalleyDAO');
foreach ($articleXML->articleGalley as $articleGalleyXML) {
$articleGalley = null;
if ($articleGalleyXML->htmlGalley == "1") {
$articleGalley = new ArticleHTMLGalley();
} else {
$articleGalley = new ArticleGalley();
}
$articleGalley->setArticleId($article->getId());
$articleGalley->setLocale((string) $articleGalleyXML->locale);
$articleGalley->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->fileId));
$articleGalley->setLabel((string) $articleGalleyXML->label);
$articleGalley->setSequence((int) $articleGalleyXML->sequence);
$articleGalley->setRemoteURL((string) $articleGalleyXML->remoteURL);
if ($articleGalley instanceof ArticleHTMLGalley) {
$articleGalley->setStyleFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->styleFileId));
}
$articleGalleyDAO->insertGalley($articleGalley);
if ($articleGalley instanceof ArticleHTMLGalley) {
foreach ($articleGalleyXML->htmlGalleyImage as $articleGalleyImageXML) {
$imageId = $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyImageXML);
$articleGalleyDAO->insertGalleyImage($articleGalley->getId(), $imageId);
}
}
$this->restoreDataObjectSettings($articleGalleyDAO, $articleGalleyXML->settings, 'article_galley_settings', 'galley_id', $articleGalley->getId());
}
$noteDAO =& DAORegistry::getDAO('NoteDAO');
foreach ($articleXML->articleNote as $articleNoteXML) {
$articleNote = new Note();
$articleNote->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleNoteXML->userId));
$articleNote->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleNoteXML->fileId));
$articleNote->setAssocType(ASSOC_TYPE_ARTICLE);
$articleNote->setAssocId($article->getId());
$articleNote->setDateCreated((string) $articleNoteXML->dateCreated);
$articleNote->setDateModified((string) $articleNoteXML->dateModified);
$articleNote->setContents((string) $articleNoteXML->contents);
$articleNote->setTitle((string) $articleNoteXML->title);
$noteDAO->insertObject($articleNote);
}
$editAssignmentDAO =& DAORegistry::getDAO('EditAssignmentDAO');
foreach ($articleXML->editAssignment as $editAssignmentXML) {
$editAssignment = new EditAssignment();
$editAssignment->setArticleId($article->getId());
$editAssignment->setEditorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editAssignmentXML->editorId));
$editAssignment->setCanReview((int) $editAssignmentXML->canReview);
$editAssignment->setCanEdit((int) $editAssignmentXML->canEdit);
$editAssignment->setDateUnderway((string) $editAssignmentXML->dateUnderway);
$editAssignment->setDateNotified((string) $editAssignmentXML->dateNotified);
$editAssignmentDAO->insertEditAssignment($editAssignment);
}
$reviewAssignmentDAO =& DAORegistry::getDAO('ReviewAssignmentDAO');
$reviewFormResponseDAO =& DAORegistry::getDAO('ReviewFormResponseDAO');
foreach ($articleXML->reviewAssignment as $reviewAssignmentXML) {
$reviewAssignment = new ReviewAssignment();
$reviewAssignment->setSubmissionId($article->getId());
$reviewAssignment->setReviewerId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $reviewAssignmentXML->reviewerId));
try {
$reviewAssignment->setReviewerFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $reviewAssignmentXML->reviewerFileId));
} catch (Exception $e) {
$this->logger->log("Arquivo do artigo {$oldArticleId} não encontrado. ID: " . (int) $reviewAssignmentXML->reviewerFileId . "\n");
}
$reviewAssignment->setReviewFormId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM, (int) $reviewAssignmentXML->reviewFormId));
$reviewAssignment->setReviewRoundId((int) $reviewAssignmentXML->reviewRoundId);
$reviewAssignment->setStageId((int) $reviewAssignmentXML->stageId);
$reviewAssignment->setReviewerFullName((string) $reviewAssignmentXML->reviewerFullName);
$reviewAssignment->setCompetingInterests((string) $reviewAssignmentXML->competingInterests);
$reviewAssignment->setRegretMessage((string) $reviewAssignmentXML->regretMessage);
$reviewAssignment->setRecommendation((string) $reviewAssignmentXML->recommendation);
$reviewAssignment->setDateAssigned((string) $reviewAssignmentXML->dateAssigned);
$reviewAssignment->setDateNotified((string) $reviewAssignmentXML->dateNotified);
$reviewAssignment->setDateConfirmed((string) $reviewAssignmentXML->dateConfirmed);
$reviewAssignment->setDateCompleted((string) $reviewAssignmentXML->dateCompleted);
$reviewAssignment->setDateAcknowledged((string) $reviewAssignmentXML->dateAcknowledged);
$reviewAssignment->setDateDue((string) $reviewAssignmentXML->dateDue);
$reviewAssignment->setDateResponseDue((string) $reviewAssignmentXML->dateResponseDue);
$reviewAssignment->setLastModified((string) $reviewAssignmentXML->lastModified);
$reviewAssignment->setDeclined((int) $reviewAssignmentXML->declined);
$reviewAssignment->setReplaced((int) $reviewAssignmentXML->replaced);
$reviewAssignment->setCancelled((int) $reviewAssignmentXML->cancelled);
$reviewAssignment->setQuality((int) $reviewAssignmentXML->quality);
$reviewAssignment->setDateRated((string) $reviewAssignmentXML->dateRated);
$reviewAssignment->setDateReminded((string) $reviewAssignmentXML->dateReminded);
$reviewAssignment->setReminderWasAutomatic((int) $reviewAssignmentXML->reminderWasAutomatic);
$reviewAssignment->setRound((int) $reviewAssignmentXML->round);
$reviewAssignment->setReviewRevision((int) $reviewAssignmentXML->reviewRevision);
$reviewAssignment->setReviewMethod((int) $reviewAssignmentXML->reviewMethod);
$reviewAssignment->setUnconsidered((int) $reviewAssignmentXML->unconsidered);
$reviewAssignmentDAO->insertObject($reviewAssignment);
foreach ($reviewAssignmentXML->formResponses->formResponse as $formResponseXML) {
$reviewFormResponseDAO->update('INSERT INTO review_form_responses
(review_form_element_id, review_id, response_type, response_value)
VALUES
(?, ?, ?, ?)', array($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM_ELEMENT, (int) $formResponseXML->reviewFormElementId), $reviewAssignment->getId(), (string) $formResponseXML->responseType, (string) $formResponseXML->responseValue));
}
}
$signoffDAO =& DAORegistry::getDAO('SignoffDAO');
foreach ($articleXML->signoff as $signoffXML) {
$signoff = new Signoff();
$signoff->setAssocType(ASSOC_TYPE_ARTICLE);
$signoff->setAssocId($article->getId());
$signoff->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $signoffXML->userId));
$signoff->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $signoffXML->fileId));
$signoff->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $signoffXML->userGroupId));
$signoff->setSymbolic((string) $signoffXML->symbolic);
$signoff->setFileRevision((int) $signoffXML->fileRevision);
$signoff->setDateUnderway((string) $signoffXML->dateUnderway);
$signoff->setDateNotified((string) $signoffXML->dateNotified);
$signoff->setDateCompleted((string) $signoffXML->dateCompleted);
$signoff->setDateAcknowledged((string) $signoffXML->dateAcknowledged);
$signoffDAO->insertObject($signoff);
}
$editorSubmissionDAO =& DAORegistry::getDAO('EditorSubmissionDAO');
foreach ($articleXML->editDecisions as $editDecisionXML) {
$editDecisions =& $editorSubmissionDAO->update('INSERT INTO edit_decisions (article_id, round, editor_id, decision, date_decided) values (?, ?, ?, ?, ?)', array($article->getId(), (string) $editDecisionXML->round, $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editDecisionXML->editorId), (string) $editDecisionXML->decision, (string) $editDecisionXML->dateDecided));
}
$publishedArticleDAO =& DAORegistry::getDAO('PublishedArticleDAO');
if (isset($articleXML->publishedArticle)) {
$publishedArticleXML = $articleXML->publishedArticle;
$publishedArticle = new PublishedArticle();
$publishedArticle->setId($article->getId());
$publishedArticle->setIssueId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ISSUE, (int) $publishedArticleXML->issueId));
$publishedArticle->setDatePublished((string) $publishedArticleXML->datePublished);
$publishedArticle->setSeq((int) $publishedArticleXML->seq);
$publishedArticle->setAccessStatus((int) $publishedArticleXML->accessStatus);
$publishedArticleDAO->insertPublishedArticle($publishedArticle);
}
$articleEventLogDAO =& DAORegistry::getDAO('ArticleEventLogDAO');
$eventLogsXML =& iterator_to_array($articleXML->eventLogs->eventLog);
$eventLogsXML = array();
foreach ($articleXML->eventLogs->eventLog as $eventLogXML) {
array_unshift($eventLogsXML, $eventLogXML);
}
foreach ($eventLogsXML as $eventLogXML) {
$eventLog = new ArticleEventLogEntry();
$eventLog->setAssocType(ASSOC_TYPE_ARTICLE);
$eventLog->setAssocId($article->getId());
$eventLog->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $eventLogXML->userId));
$eventLog->setDateLogged((string) $eventLogXML->dateLogged);
$eventLog->setIPAddress((string) $eventLogXML->IPAddress);
$eventLog->setEventType((int) $eventLogXML->eventType);
$eventLog->setMessage((string) $eventLogXML->message);
$eventLog->setIsTranslated((int) $eventLogXML->isTranslated);
$articleEventLogDAO->insertObject($eventLog);
$this->restoreDataObjectSettings($articleEventLogDAO, $eventLogXML->settings, 'event_log_settings', 'log_id', $eventLog->getId());
}
try {
$article->setSubmissionFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->submissionFileId));
} catch (Exception $e) {
}
try {
$article->setRevisedFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->revisedFileId));
} catch (Exception $e) {
}
try {
$article->setReviewFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->reviewFileId));
} catch (Exception $e) {
}
try {
$article->setEditorFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->editorFileId));
} catch (Exception $e) {
}
$articleDAO->updateArticle($article);
$this->nextElement();
}
}
function handleArticleNode(&$journal, &$articleNode, &$issue, &$section, &$article, &$publishedArticle, &$errors, &$user, $isCommandLine, &$dependentItems)
{
$errors = array();
$journalSupportedLocales = array_keys($journal->getSupportedLocaleNames());
// => journal locales must be set up before
$journalPrimaryLocale = $journal->getPrimaryLocale();
$publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO');
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$article = new Article();
$article->setLocale($journalPrimaryLocale);
// FIXME in bug #5543
$article->setJournalId($journal->getId());
$article->setUserId($user->getId());
$article->setSectionId($section->getId());
$article->setStatus(STATUS_PUBLISHED);
$article->setSubmissionProgress(0);
$article->setDateSubmitted(Core::getCurrentDate());
$article->stampStatusModified();
$titleExists = false;
for ($index = 0; $node = $articleNode->getChildByName('title', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleTitleLocaleUnsupported', array('articleTitle' => $node->getValue(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setTitle($node->getValue(), $locale);
$titleExists = true;
}
if (!$titleExists || $article->getTitle($journalPrimaryLocale) == "") {
$errors[] = array('plugins.importexport.native.import.error.articleTitleMissing', array('issueTitle' => $issue->getIssueIdentification(), 'sectionTitle' => $section->getLocalizedTitle()));
return false;
}
for ($index = 0; $node = $articleNode->getChildByName('abstract', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleAbstractLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setAbstract($node->getValue(), $locale);
}
if ($indexingNode = $articleNode->getChildByName('indexing')) {
for ($index = 0; $node = $indexingNode->getChildByName('discipline', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleDisciplineLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setDiscipline($node->getValue(), $locale);
}
for ($index = 0; $node = $indexingNode->getChildByName('type', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleTypeLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setType($node->getValue(), $locale);
}
for ($index = 0; $node = $indexingNode->getChildByName('subject', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleSubjectLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setSubject($node->getValue(), $locale);
}
for ($index = 0; $node = $indexingNode->getChildByName('subject_class', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleSubjectClassLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setSubjectClass($node->getValue(), $locale);
}
if ($coverageNode = $indexingNode->getChildByName('coverage')) {
for ($index = 0; $node = $coverageNode->getChildByName('geographical', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleCoverageGeoLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setCoverageGeo($node->getValue(), $locale);
}
for ($index = 0; $node = $coverageNode->getChildByName('chronological', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleCoverageChronLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setCoverageChron($node->getValue(), $locale);
}
for ($index = 0; $node = $coverageNode->getChildByName('sample', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleCoverageSampleLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setCoverageSample($node->getValue(), $locale);
}
}
}
for ($index = 0; $node = $articleNode->getChildByName('sponsor', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleSponsorLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$article->setSponsor($node->getValue(), $locale);
}
if ($node = $articleNode->getChildByName('pages')) {
$article->setPages($node->getValue());
}
if ($language = $articleNode->getAttribute('language')) {
$article->setLanguage($language);
}
/* --- Handle authors --- */
$hasErrors = false;
for ($index = 0; $node = $articleNode->getChildByName('author', $index); $index++) {
if (!NativeImportDom::handleAuthorNode($journal, $node, $issue, $section, $article, $authorErrors)) {
$errors = array_merge($errors, $authorErrors);
$hasErrors = true;
}
}
if ($hasErrors) {
return false;
}
/* --- Handle covers --- */
for ($index = 0; $node = $articleNode->getChildByName('cover', $index); $index++) {
if (!NativeImportDom::handleArticleCoverNode($journal, $node, $article, $coverErrors, $isCommandLine)) {
$errors = array_merge($errors, $coverErrors);
$hasErrors = true;
}
}
for ($index = 0; $node = $articleNode->getChildByName('id', $index); $index++) {
switch ($node->getAttribute('type')) {
case 'doi':
$article->setStoredDOI($node->getValue());
break;
}
}
$articleDao->insertArticle($article);
$dependentItems[] = array('article', $article);
// Create submission mangement records
$signoffDao =& DAORegistry::getDAO('SignoffDAO');
$initialCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $article->getId());
$initialCopyeditSignoff->setUserId(0);
$signoffDao->updateObject($initialCopyeditSignoff);
$authorCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
$authorCopyeditSignoff->setUserId(0);
$signoffDao->updateObject($authorCopyeditSignoff);
$finalCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $article->getId());
$finalCopyeditSignoff->setUserId(0);
$signoffDao->updateObject($finalCopyeditSignoff);
$layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
$layoutSignoff->setUserId(0);
$signoffDao->updateObject($layoutSignoff);
$authorProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
$authorProofSignoff->setUserId(0);
$signoffDao->updateObject($authorProofSignoff);
$proofreaderProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $article->getId());
$proofreaderProofSignoff->setUserId(0);
$signoffDao->updateObject($proofreaderProofSignoff);
$layoutProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
$layoutProofSignoff->setUserId(0);
$signoffDao->updateObject($layoutProofSignoff);
// Log the import in the article event log.
import('classes.article.log.ArticleLog');
import('classes.article.log.ArticleEventLogEntry');
ArticleLog::logEvent($article->getId(), ARTICLE_LOG_ARTICLE_IMPORT, ARTICLE_LOG_TYPE_DEFAULT, 0, 'log.imported', array('userName' => $user->getFullName(), 'articleId' => $article->getId()));
// Insert published article entry.
$publishedArticle = new PublishedArticle();
$publishedArticle->setArticleId($article->getId());
$publishedArticle->setIssueId($issue->getId());
if ($node = $articleNode->getChildByName('date_published')) {
$publishedDate = strtotime($node->getValue());
if ($publishedDate === -1) {
$errors[] = array('plugins.importexport.native.import.error.invalidDate', array('value' => $node->getValue()));
return false;
} else {
$publishedArticle->setDatePublished($publishedDate);
}
}
$node = $articleNode->getChildByName('open_access');
$publishedArticle->setAccessStatus($node ? ARTICLE_ACCESS_OPEN : ARTICLE_ACCESS_ISSUE_DEFAULT);
$publishedArticle->setSeq(REALLY_BIG_NUMBER);
$publishedArticle->setViews(0);
$publishedArticle->setPublicArticleId($articleNode->getAttribute('public_id'));
$publishedArticle->setPubId($publishedArticleDao->insertPublishedArticle($publishedArticle));
$publishedArticleDao->resequencePublishedArticles($section->getId(), $issue->getId());
/* --- Galleys (html or otherwise handled simultaneously) --- */
import('classes.file.ArticleFileManager');
$articleFileManager = new ArticleFileManager($article->getId());
/* --- Handle galleys --- */
$hasErrors = false;
$galleyCount = 0;
for ($index = 0; $index < count($articleNode->children); $index++) {
$node = $articleNode->children[$index];
if ($node->getName() == 'htmlgalley') {
$isHtml = true;
} elseif ($node->getName() == 'galley') {
$isHtml = false;
} else {
continue;
}
if (!NativeImportDom::handleGalleyNode($journal, $node, $issue, $section, $article, $galleyErrors, $isCommandLine, $isHtml, $galleyCount, $articleFileManager)) {
$errors = array_merge($errors, $galleyErrors);
$hasErrors = true;
}
$galleyCount++;
unset($node);
}
if ($hasErrors) {
return false;
}
/* --- Handle supplemental files --- */
$hasErrors = false;
for ($index = 0; $node = $articleNode->getChildByName('supplemental_file', $index); $index++) {
if (!NativeImportDom::handleSuppFileNode($journal, $node, $issue, $section, $article, $suppFileErrors, $isCommandLine, $articleFileManager)) {
$errors = array_merge($errors, $suppFileErrors);
$hasErrors = true;
}
}
if ($hasErrors) {
return false;
}
// Index the inserted article.
import('classes.search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
ArticleSearchIndex::indexArticleFiles($article);
return true;
}
/**
* Schedule/unschedule an article for publication.
* @param $args array
* @param $request object
*/
function scheduleForPublication($args, $request)
{
$articleId = (int) array_shift($args);
$issueId = (int) $request->getUserVar('issueId');
$this->validate($articleId, SECTION_EDITOR_ACCESS_EDIT);
$journal =& $request->getJournal();
$submission =& $this->submission;
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO');
$sectionDao =& DAORegistry::getDAO('SectionDAO');
$publishedArticle =& $publishedArticleDao->getPublishedArticleByArticleId($articleId);
$issueDao =& DAORegistry::getDAO('IssueDAO');
$issue =& $issueDao->getIssueById($issueId, $journal->getId());
if ($issue) {
// Schedule against an issue.
if ($publishedArticle) {
$publishedArticle->setIssueId($issueId);
$publishedArticleDao->updatePublishedArticle($publishedArticle);
} else {
$publishedArticle = new PublishedArticle();
$publishedArticle->setId($submission->getId());
$publishedArticle->setIssueId($issueId);
$publishedArticle->setDatePublished(Core::getCurrentDate());
$publishedArticle->setSeq(REALLY_BIG_NUMBER);
$publishedArticle->setViews(0);
$publishedArticle->setAccessStatus(ARTICLE_ACCESS_ISSUE_DEFAULT);
$publishedArticleDao->insertPublishedArticle($publishedArticle);
// Resequence the articles.
$publishedArticleDao->resequencePublishedArticles($submission->getSectionId(), $issueId);
// If we're using custom section ordering, and if this is the first
// article published in a section, make sure we enter a custom ordering
// for it. (Default at the end of the list.)
if ($sectionDao->customSectionOrderingExists($issueId)) {
if ($sectionDao->getCustomSectionOrder($issueId, $submission->getSectionId()) === null) {
$sectionDao->insertCustomSectionOrder($issueId, $submission->getSectionId(), REALLY_BIG_NUMBER);
$sectionDao->resequenceCustomSectionOrders($issueId);
}
}
}
} else {
if ($publishedArticle) {
// This was published elsewhere; make sure we don't
// mess up sequencing information.
$publishedArticleDao->resequencePublishedArticles($submission->getSectionId(), $publishedArticle->getIssueId());
$publishedArticleDao->deletePublishedArticleByArticleId($articleId);
}
}
$submission->stampStatusModified();
if ($issue && $issue->getPublished()) {
$submission->setStatus(STATUS_PUBLISHED);
} else {
$submission->setStatus(STATUS_QUEUED);
}
$sectionEditorSubmissionDao->updateSectionEditorSubmission($submission);
$request->redirect(null, null, 'submissionEditing', array($articleId), null, 'scheduling');
}
/**
* creates and returns a published article object from a row, including all supp files etc.
* @param $row array
* @param $callHooks boolean Whether or not to call hooks
* @return PublishedArticle object
*/
function &_returnPublishedArticleFromRow($row, $callHooks = true)
{
$publishedArticle = new PublishedArticle();
$publishedArticle->setPublishedArticleId($row['published_article_id']);
$publishedArticle->setIssueId($row['issue_id']);
$publishedArticle->setDatePublished($this->datetimeFromDB($row['date_published']));
$publishedArticle->setSeq($row['seq']);
$publishedArticle->setAccessStatus($row['access_status']);
$publishedArticle->setGalleys($this->galleyDao->getGalleysByArticle($row['article_id']));
// Article attributes
$this->articleDao->_articleFromRow($publishedArticle, $row);
$publishedArticle->setSuppFiles($this->suppFileDao->getSuppFilesByArticle($row['article_id']));
if ($callHooks) {
HookRegistry::call('PublishedArticleDAO::_returnPublishedArticleFromRow', array(&$publishedArticle, &$row));
}
return $publishedArticle;
}
/**
* Schedule/unschedule an article for publication.
* @param $args array
* @param $request object
*/
function scheduleForPublication($args, $request)
{
$articleId = (int) array_shift($args);
$issueId = (int) $request->getUserVar('issueId');
$this->validate($articleId, SECTION_EDITOR_ACCESS_EDIT);
$journal =& $request->getJournal();
$submission =& $this->submission;
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO');
$sectionDao =& DAORegistry::getDAO('SectionDAO');
$publishedArticle =& $publishedArticleDao->getPublishedArticleByArticleId($articleId);
$issueDao =& DAORegistry::getDAO('IssueDAO');
$issue =& $issueDao->getIssueById($issueId, $journal->getId());
if ($publishedArticle) {
if (!$issue || !$issue->getPublished()) {
$fromIssue =& $issueDao->getIssueById($publishedArticle->getIssueId(), $journal->getId());
if ($fromIssue->getPublished()) {
// Insert article tombstone
import('classes.article.ArticleTombstoneManager');
$articleTombstoneManager = new ArticleTombstoneManager();
$articleTombstoneManager->insertArticleTombstone($submission, $journal);
}
}
}
import('classes.search.ArticleSearchIndex');
$articleSearchIndex = new ArticleSearchIndex();
if ($issue) {
// Schedule against an issue.
if ($publishedArticle) {
$publishedArticle->setIssueId($issueId);
$publishedArticle->setSeq(REALLY_BIG_NUMBER);
$publishedArticleDao->updatePublishedArticle($publishedArticle);
// Re-index the published article metadata.
$articleSearchIndex->articleMetadataChanged($publishedArticle);
} else {
$publishedArticle = new PublishedArticle();
$publishedArticle->setId($submission->getId());
$publishedArticle->setIssueId($issueId);
$publishedArticle->setDatePublished(Core::getCurrentDate());
$publishedArticle->setSeq(REALLY_BIG_NUMBER);
$publishedArticle->setAccessStatus(ARTICLE_ACCESS_ISSUE_DEFAULT);
$publishedArticleDao->insertPublishedArticle($publishedArticle);
// If we're using custom section ordering, and if this is the first
// article published in a section, make sure we enter a custom ordering
// for it. (Default at the end of the list.)
if ($sectionDao->customSectionOrderingExists($issueId)) {
if ($sectionDao->getCustomSectionOrder($issueId, $submission->getSectionId()) === null) {
$sectionDao->insertCustomSectionOrder($issueId, $submission->getSectionId(), REALLY_BIG_NUMBER);
$sectionDao->resequenceCustomSectionOrders($issueId);
}
}
// Index the published article metadata and files for the first time.
$articleSearchIndex->articleMetadataChanged($publishedArticle);
$articleSearchIndex->articleFilesChanged($publishedArticle);
}
} else {
if ($publishedArticle) {
// This was published elsewhere; make sure we don't
// mess up sequencing information.
$issueId = $publishedArticle->getIssueId();
$publishedArticleDao->deletePublishedArticleByArticleId($articleId);
// Delete the article from the search index.
$articleSearchIndex->articleFileDeleted($articleId);
}
}
// Resequence the articles.
$publishedArticleDao->resequencePublishedArticles($submission->getSectionId(), $issueId);
$submission->stampStatusModified();
if ($issue && $issue->getPublished()) {
$submission->setStatus(STATUS_PUBLISHED);
// delete article tombstone
$tombstoneDao =& DAORegistry::getDAO('DataObjectTombstoneDAO');
$tombstoneDao->deleteByDataObjectId($submission->getId());
} else {
$submission->setStatus(STATUS_QUEUED);
}
$sectionEditorSubmissionDao->updateSectionEditorSubmission($submission);
// Call initialize permissions again to check if copyright year needs to be initialized.
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$article = $articleDao->getArticle($articleId);
$article->initializePermissions();
$articleDao->updateLocaleFields($article);
$articleSearchIndex->articleChangesFinished();
$request->redirect(null, null, 'submissionEditing', array($articleId), null, 'scheduling');
}
/**
* Class-specific methods for published submissions.
* @param PublishedArticle $submission
* @param DOMElement $node
* @return PublishedArticle
*/
function populatePublishedSubmission($submission, $node)
{
$deployment = $this->getDeployment();
$issue = $deployment->getIssue();
if (empty($issue)) {
$issueIdentificationNodes = $node->getElementsByTagName('issue_identification');
if ($issueIdentificationNodes->length != 1) {
$titleNodes = $node->getElementsByTagName('title');
$deployment->addError(ASSOC_TYPE_SUBMISSION, $submission->getId(), __('plugins.importexport.native.import.error.issueIdentificationMissing', array('articleTitle' => $titleNodes->item(0)->textContent)));
} else {
$issueIdentificationNode = $issueIdentificationNodes->item(0);
$issue = $this->parseIssueIdentification($issueIdentificationNode);
}
}
$submission->setSequence($node->getAttribute('seq'));
$submission->setAccessStatus($node->getAttribute('access_status'));
if ($issue) {
$submission->setIssueId($issue->getId());
}
return $submission;
}
/**
* Schedule an article for publication in a given issue
*/
function scheduleForPublication($articleId, $issueId)
{
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO');
$sectionDao =& DAORegistry::getDAO('SectionDAO');
$issueDao =& DAORegistry::getDAO('IssueDAO');
$request =& $this->request;
$journal =& $request->getJournal();
$submission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
$publishedArticle =& $publishedArticleDao->getPublishedArticleByArticleId($articleId);
$issue =& $issueDao->getIssueById($issueId, $journal->getId());
if ($issue) {
// Schedule against an issue.
if ($publishedArticle) {
$publishedArticle->setIssueId($issueId);
$publishedArticleDao->updatePublishedArticle($publishedArticle);
} else {
$publishedArticle = new PublishedArticle();
$publishedArticle->setId($submission->getId());
$publishedArticle->setIssueId($issueId);
$publishedArticle->setDatePublished($this->getData('datePublished'));
$publishedArticle->setSeq(REALLY_BIG_NUMBER);
$publishedArticle->setAccessStatus(ARTICLE_ACCESS_ISSUE_DEFAULT);
$publishedArticleDao->insertPublishedArticle($publishedArticle);
// Resequence the articles.
$publishedArticleDao->resequencePublishedArticles($submission->getSectionId(), $issueId);
// If we're using custom section ordering, and if this is the first
// article published in a section, make sure we enter a custom ordering
// for it. (Default at the end of the list.)
if ($sectionDao->customSectionOrderingExists($issueId)) {
if ($sectionDao->getCustomSectionOrder($issueId, $submission->getSectionId()) === null) {
$sectionDao->insertCustomSectionOrder($issueId, $submission->getSectionId(), REALLY_BIG_NUMBER);
$sectionDao->resequenceCustomSectionOrders($issueId);
}
}
}
} else {
if ($publishedArticle) {
// This was published elsewhere; make sure we don't
// mess up sequencing information.
$publishedArticleDao->resequencePublishedArticles($submission->getSectionId(), $publishedArticle->getIssueId());
$publishedArticleDao->deletePublishedArticleByArticleId($articleId);
}
}
$submission->stampStatusModified();
if ($issue && $issue->getPublished()) {
$submission->setStatus(STATUS_PUBLISHED);
if ($publishedArticle && !$publishedArticle->getDatePublished()) {
$publishedArticle->setDatePublished($issue->getDatePublished());
}
} else {
$submission->setStatus(STATUS_QUEUED);
}
$sectionEditorSubmissionDao->updateSectionEditorSubmission($submission);
// Call initialize permissions again to check if copyright year needs to be initialized.
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$article = $articleDao->getArticle($articleId);
$article->initializePermissions();
$articleDao->updateLocaleFields($article);
}