/**
* Store a newly created resource in storage.
*
* @return Response
*/
public function store()
{
$action = Input::get('action');
$user_id = Auth::user()->id;
$test = Input::get('test');
$organism = Input::get('organism');
$drug = Input::get('drug');
$zone = Input::get('zone');
$interpretation = Input::get('interpretation');
for ($i = 0; $i < count($test); $i++) {
$sensitivity = Susceptibility::getDrugSusceptibility($test[$i], $organism[$i], $drug[$i]);
if (count($sensitivity) > 0) {
$drugSusceptibility = Susceptibility::find($sensitivity->id);
$drugSusceptibility->user_id = $user_id;
$drugSusceptibility->test_id = $test[$i];
$drugSusceptibility->organism_id = $organism[$i];
$drugSusceptibility->drug_id = $drug[$i];
$drugSusceptibility->zone = $zone[$i];
$drugSusceptibility->interpretation = $interpretation[$i];
$drugSusceptibility->save();
} else {
$drugSusceptibility = new Susceptibility();
$drugSusceptibility->user_id = $user_id;
$drugSusceptibility->test_id = $test[$i];
$drugSusceptibility->organism_id = $organism[$i];
$drugSusceptibility->drug_id = $drug[$i];
$drugSusceptibility->zone = $zone[$i];
$drugSusceptibility->interpretation = $interpretation[$i];
$drugSusceptibility->save();
}
}
if ($action == "results") {
$test_id = Input::get('testId');
$organism_id = Input::get('organismId');
$susceptibility = Susceptibility::where('test_id', $test_id)->where('organism_id', $organism_id)->where('zone', '!=', 0)->get();
foreach ($susceptibility as $drugSusceptibility) {
$drugSusceptibility->drugName = Drug::find($drugSusceptibility->drug_id)->name;
$drugSusceptibility->pathogen = Organism::find($drugSusceptibility->organism_id)->name;
if ($drugSusceptibility->interpretation == 'I') {
$drugSusceptibility->sensitivity = 'Intermediate';
} else {
if ($drugSusceptibility->interpretation == 'R') {
$drugSusceptibility->sensitivity = 'Resistant';
} else {
if ($drugSusceptibility->interpretation == 'S') {
$drugSusceptibility->sensitivity = 'Sestitive';
}
}
}
}
return json_encode($susceptibility);
}
}
/**
* Tests the update function in the OrganismController
* @param void
* @return void
*/
public function testUpdate()
{
Input::replace($this->organismData);
$organism = new OrganismController();
$organism->store();
$organismStored = Organism::orderBy('id', 'desc')->take(1)->get()->toArray();
Input::replace($this->organismDataUpdate);
$organism->update($organismStored[0]['id']);
$organismSavedUpdated = Organism::find($organismStored[0]['id']);
$this->assertEquals($organismSavedUpdated->name, $this->organismDataUpdate['name']);
$this->assertEquals($organismSavedUpdated->description, $this->organismDataUpdate['description']);
//Getting the drugs related to the organism
/*$organismDrugUpdated = Organism::find($organismStored[0]['id'])->drugs->toArray();
$this->assertEquals(12, $this->organismDataUpdate['drugs'][0]);*/
}
/**
* Remove the specified resource from storage (soft delete).
*
* @param int $id
* @return Response
*/
public function delete($id)
{
//Soft delete the organism
$organism = Organism::find($id);
/*$testCategoryInUse = TestType::where('test_category_id', '=', $id)->first();
if (empty($testCategoryInUse)) {
// The test category is not in use
$testcategory->delete();
} else {
// The test category is in use
$url = Session::get('SOURCE_URL');
return Redirect::to($url)
->with('message', trans('messages.failure-test-category-in-use'));
}*/
// redirect
$url = Session::get('SOURCE_URL');
return Redirect::to($url)->with('message', trans('messages.success-deleting-organism'));
}
