/**
* login method
*
* @return void
*/
public function login()
{
$user_id = $this->Session->read('user_id');
$group_id = $this->Auth->user('group_id');
if (!isset($this->data['User']['username'])) {
$this->Auth->authenticate['Form'] = array('fields' => array('username' => 'email'));
}
if (!isset($user_id)) {
// if (empty($this->data)) {
// $cookie = $this->Cookie->read('Auth.User');
// if (!is_null($cookie)) {
// if ($this->Auth->login($cookie)) {
// $id_user = $this->Auth->user('id');
// $this->Session->write('user_id', $id_user);
// $username = $this->Auth->user('full_name');
// $this->Session->write('username', $username);
// $email = $this->Auth->user('email');
// $this->Session->write('email', $email);
// $group_id = $this->Auth->user('group_id');
// $this->Session->write('group_id', $group_id);
// $image = $this->Auth->user('image');
// if (isset($image)) {
// $extension = $this->Auth->user('image_extension');
// $image = 'data:' . $extension . ';base64,' . base64_encode($this->Auth->user('image'));
// }
// $this->Session->write('image', $image);
//
//
// if ($group_id == 1)
// $this->redirect(array('controller' => 'Projects', 'action' => 'index'));
// else
// $this->redirect(array('controller' => 'usersRounds', 'action' => 'index'));
// } else {// Delete invalid Cookie
// $this->Cookie->destroy('Auth.User');
// $this->Session->setFlash(__('Your username or pasword is incorrect'));
// $this->redirect(array('controller' => 'Posts', 'action' => 'publicIndex'));
// }
// }
//
// $this->Session->setFlash(__('You are not authorized to access this location (user Login)'));
// }
if ($this->request->is('post')) {
if ($this->Auth->login()) {
$user_id = $this->Auth->user('id');
$this->Session->write('user_id', $user_id);
$username = $this->Auth->user('full_name');
$this->Session->write('username', $username);
$email = $this->Auth->user('email');
$this->Session->write('email', $email);
$group_id = $this->Auth->user('group_id');
$this->Session->write('group_id', $group_id);
$image = $this->Auth->user('image');
if (isset($image)) {
$extension = $this->Auth->user('image_type');
$image = 'data:' . $extension . ';base64,' . base64_encode($this->Auth->user('image'));
}
$this->Session->write('image', $image);
// if (!empty($this->data) && $this->data['User']['remember_me']) {
// $cookie = array();
// $cookie['username'] = $username;
// $cookie['password'] = $this->data['User']['password'];
// $cookie['user_id'] = $id_user;
// $cookie['group_id'] = $group_id;
// $this->Cookie->write('Auth.User', $cookie, true, '+2 weeks');
// unset($this->data['User']['remember_me']);
// }
//ver si el usuario esta ya logueado
App::uses('CakeTime', 'Utility');
$date = $this->Auth->user('logged_until');
$isPast = CakeTime::isPast($date);
if (!$isPast) {
return $this->redirect(array('action' => 'logout', true));
}
$connectionLog = Configure::read('connectionLog');
if ($connectionLog) {
$ip = $this->request->clientIp();
// $ip = "4.4.4.4";
$connectionLogProxy = Configure::read('connectionLogProxy');
if ($connectionLogProxy && isset($this->request->data['User']['connection-details'])) {
$details = $this->request->data['User']['connection-details'];
$copyDetails = json_decode($details, true);
$ip = $copyDetails['ip'];
} else {
$details = @file_get_contents("http://ipinfo.io/{$ip}/json");
}
if ($details && $ip != '127.0.0.1') {
$details = json_decode($details, true);
} else {
$details = array();
$details['city'] = "unknown";
$details['country'] = "unknown";
}
$region = "";
if (isset($details['region'])) {
$region = $details['region'];
}
$data = array('user_id' => $user_id, 'ip' => $ip, 'city' => $details['city'] . " ({$region}) ", 'country' => $details['country'], 'session_time' => '00:00:00');
$this->User->Connection->create();
$this->User->Connection->save($data);
$this->Session->write('connection_id', $this->User->Connection->id);
}
if ($group_id == 1) {
$this->redirect(array('controller' => 'Projects', 'action' => 'index'));
} else {
$this->redirect(array('controller' => 'rounds', 'action' => 'index'));
}
} else {
$this->Session->setFlash(__('The username or the password is incorrect.'));
}
}
if (isset($this->request->data)) {
$this->Session->write('loginIntent', $this->request->data);
return $this->redirect(array('controller' => 'Posts', 'action' => 'publicIndex'));
}
$this->redirect(array('controller' => 'Posts', 'action' => 'publicIndex'));
} else {
$this->autoRender = false;
$this->redirect(array('action' => 'logout'));
}
}
public function start($round_id = null, $user_id = null, $operation = null)
{
$this->Round = $this->AnnotatedDocument->Round;
$this->User = $this->Round->User;
$this->UsersRound = $this->Round->UsersRound;
$this->Project = $this->Round->Project;
$this->Document = $this->Project->Document;
$this->Type = $this->Round->Type;
$this->Relation = $this->Project->Relation;
$this->DocumentsProject = $this->Project->DocumentsProject;
$this->Annotation = $this->Round->Annotation;
$this->AnnotationsInterRelation = $this->Annotation->AnnotationsInterRelation;
$this->Job = $this->User->Job;
$find = false;
$isReviewAutomaticAnnotation = false;
switch ($operation) {
case "find":
$find = true;
break;
case "lastAutomatic":
$isReviewAutomaticAnnotation = true;
break;
}
$this->Round->id = $round_id;
if (!$this->Round->exists()) {
throw new NotFoundException(__('Invalid round'));
}
//
$group_id = $this->Session->read('group_id');
if ($group_id > 1) {
$redirect = array('controller' => 'rounds', 'action' => 'index');
$user_id = $this->Session->read('user_id');
} else {
$redirect = array('controller' => 'rounds', 'action' => 'view', $round_id);
}
if ($isReviewAutomaticAnnotation) {
$documents = $this->Job->find('first', array('recursive' => -1, 'fields' => array("comments"), 'conditions' => array('Job.comments IS NOT NULL', 'Job.exception IS NULL', 'Job.user_id' => $user_id, 'Job.round_id' => $round_id, 'program' => 'Automatic_Dictionary_Annotation'), 'order' => array('Job.modified DESC')));
if (!empty($documents)) {
$documents = json_decode($documents['Job']['comments'], true);
if (json_last_error() == JSON_ERROR_NONE) {
$documents = array_keys($documents["documentsWithAnnotations"]);
if (empty($documents)) {
$this->Session->setFlash(__('There are no recommendations for you [JSON empty]'));
$this->redirect($redirect);
}
} else {
$this->Session->setFlash(__('There are no recommendations for you [JSON parser error]'));
$this->redirect($redirect);
}
} else {
$this->Session->setFlash(__('There are no recommendations for you'));
$this->redirect($redirect);
}
}
$this->User->id = $user_id;
if (!$this->User->exists()) {
throw new NotFoundException(__('Invalid User'));
}
//
$userRound = $this->UsersRound->find('first', array('recursive' => -1, 'fields' => 'id', 'conditions' => array('user_id' => $user_id, 'round_id' => $round_id)));
$users_round_id = $userRound['UsersRound']['id'];
$this->UsersRound->id = $userRound['UsersRound']['id'];
if ($this->UsersRound->field('state') != 0) {
$this->Session->setFlash(__('There are one process working in this documents'));
$this->redirect($redirect);
}
$isMultiDocument = Configure::read('documentsPerPage') > 1;
if ($find && $group_id == 1) {
$isMultiDocument = false;
} else {
$find = false;
}
$round_id = $this->UsersRound->field('round_id');
// $round = Cache::read('round-id-' . $round_id, 'short');
// if (!$round) {
//buscamos el round para saber la fecha de finalizacion
$round = $this->Round->find('first', array('recursive' => -1, 'conditions' => array('Round.id' => $round_id)));
// Cache::write('round-id-' . $round_id, $round, 'short');
// }
if (empty($round)) {
throw new NotFoundException(__('Empty round data'));
}
App::uses('CakeTime', 'Utility');
$isEnd = CakeTime::isPast($round['Round']['ends_in_date']);
if ($group_id > 1) {
if (isset($round['Round']['start_document'])) {
$offset = $round['Round']['start_document'] - 1;
if ($offset < 0) {
$offset = 0;
}
$limit = $round['Round']['end_document'];
} else {
$offset = 0;
$limit = 0;
}
} else {
$offset = 0;
$limit = 0;
$isEnd = true;
}
$projectId = $round['Round']['project_id'];
$onlyAnnotated = false;
if ($group_id == 1 || $isEnd) {
$onlyAnnotated = true;
}
//buscamos todos los documentos del proyecto para el selector
if ($isReviewAutomaticAnnotation) {
$setDocumentsToAnnotateByRound = Cache::read('documents-automatic-of-user' . $round_id . $user_id . count($documents), 'short');
$documentsListByRound = Cache::read('documents-list-by-round' . $round_id . $user_id . count($documents), 'short');
} else {
if ($onlyAnnotated) {
$setDocumentsToAnnotateByRound = Cache::read('documents-annotated-of-user' . $round_id . $user_id . $offset . $limit, 'short');
$documentsListByRound = Cache::read('documents-list-by-round' . $round_id . $user_id . $offset . $limit, 'short');
} else {
$setDocumentsToAnnotateByRound = Cache::read('documents-to-annotate-round' . $round_id . $offset . $limit, 'short');
$documentsListByRound = Cache::read('documents-list-by-round' . $round_id . $offset . $limit, 'short');
}
}
if (empty($setDocumentsToAnnotateByRound)) {
if ($isReviewAutomaticAnnotation) {
$setDocumentsToAnnotateByRound = $this->Document->find('all', array('recursive' => -1, 'fields' => array('id', 'title', 'external_id'), 'joins' => array(array('table' => 'annotated_documents', 'alias' => 'AnnotatedDocument', 'type' => 'LEFT', 'conditions' => array('AnnotatedDocument.document_id = Document.id', 'AnnotatedDocument.text_marked IS NOT NULL'))), 'conditions' => array('AnnotatedDocument.round_id' => $round_id, 'AnnotatedDocument.user_id' => $user_id, 'AnnotatedDocument.document_id' => $documents), 'order' => array('document_id ASC')));
} else {
if ($onlyAnnotated) {
$setDocumentsToAnnotateByRound = $this->Document->find('all', array('recursive' => -1, 'fields' => array('id', 'title', 'external_id'), 'joins' => array(array('table' => 'annotated_documents', 'alias' => 'AnnotatedDocument', 'type' => 'LEFT', 'conditions' => array('AnnotatedDocument.document_id = Document.id', 'AnnotatedDocument.text_marked IS NOT NULL'))), 'conditions' => array('AnnotatedDocument.round_id' => $round_id, 'AnnotatedDocument.user_id' => $user_id), 'limit' => $limit, 'offset' => $offset, 'order' => array('document_id ASC')));
} else {
$setDocumentsToAnnotateByRound = $this->Document->find('all', array('recursive' => -1, 'fields' => array('id', 'title', 'external_id'), 'joins' => array(array('table' => 'documents_projects', 'alias' => 'DocumentsProject', 'type' => 'INNER', 'conditions' => array('DocumentsProject.document_id = Document.id'))), 'conditions' => array('DocumentsProject.project_id' => $projectId), 'limit' => $limit, 'offset' => $offset, 'order' => array('document_id ASC')));
}
}
$documentsListByRound = array();
// $documentsListByRound = Set::format($setDocumentsToAnnotateByRound, '{1} - {0}', array(
// '{n}.Document.external_id', '{n}.Document.title'));
//
// $setDocumentsToAnnotateByRound = Set::combine($setDocumentsToAnnotateByRound, '{n}.Document.id', '{n}.Document');
$documentsListByRound = array();
$copySetDocumentsToAnnotateByRound = array();
$cont = 0;
foreach ($setDocumentsToAnnotateByRound as $document) {
$id = $document['Document']['id'];
$copySetDocumentsToAnnotateByRound[$id] = $document['Document'];
array_push($documentsListByRound, array('name' => $document['Document']['external_id'] . " - " . $document['Document']['title'], 'value' => $cont, 'data-document-id' => $id));
$cont++;
}
$setDocumentsToAnnotateByRound = $copySetDocumentsToAnnotateByRound;
if ($isReviewAutomaticAnnotation) {
Cache::write('documents-automatic-of-user' . $round_id . $user_id . count($documents), $setDocumentsToAnnotateByRound, 'short');
Cache::write('documents-list-by-round' . $round_id . $user_id . count($documents), $documentsListByRound, 'short');
} else {
if ($onlyAnnotated) {
Cache::write('documents-annotated-of-user' . $round_id . $user_id . $offset . $limit, $setDocumentsToAnnotateByRound, 'short');
Cache::write('documents-list-by-round' . $round_id . $user_id . $offset . $limit, $documentsListByRound, 'short');
} else {
Cache::write('documents-to-annotate-round' . $projectId . $offset . $limit, $setDocumentsToAnnotateByRound, 'short');
Cache::write('documents-list-by-round' . $round_id . $offset . $limit, $documentsListByRound, 'short');
}
}
}
$idsDocumentsToAnnotateByRound = array_keys($setDocumentsToAnnotateByRound);
if (isset($this->params['named']['page'])) {
$page = $this->params['named']['page'];
if ($page <= 0) {
$page = 1;
}
if (!$isMultiDocument) {
$document_id = $idsDocumentsToAnnotateByRound[$page - 1];
}
} else {
$page = 1;
if (!$isMultiDocument) {
$document_id = $idsDocumentsToAnnotateByRound[0];
}
}
if ($isMultiDocument) {
/* ================================================================================= */
/* ==================================Multidocument================================== */
/* ================================================================================= */
$this->paginate = array('recursive' => -1, 'order' => array('DocumentsProject.document_id' => 'asc'), 'conditions' => array('DocumentsProject.document_id' => $idsDocumentsToAnnotateByRound, 'DocumentsProject.project_id' => $projectId), 'limit' => Configure::read('documentsPerPage'), 'order' => 'document_id ASC');
$documentsProject = $this->paginate($this->DocumentsProject);
$idsDocumentsOfPage = Hash::extract($documentsProject, '{n}.DocumentsProject.document_id');
if (empty($idsDocumentsOfPage)) {
$this->Session->setFlash(__('There are no documents annotated'));
$this->redirect($redirect);
}
if ($group_id > 1) {
//delete annotation
$deleteCascade = Configure::read('deleteCascade');
$this->Annotation->deleteAll(array('Annotation.round_id' => $round_id, 'Annotation.user_id' => $user_id, 'Annotation.document_id' => $idsDocumentsOfPage, 'Annotation.init IS NULL', 'Annotation.end IS NULL'), $deleteCascade);
}
$annotatedDocuments = $this->AnnotatedDocument->find('all', array('fields' => array('id', 'document_id', 'text_marked'), 'recursive' => -1, 'conditions' => array('round_id' => $round_id, 'user_id' => $user_id, 'document_id' => $idsDocumentsOfPage), 'order' => array('AnnotatedDocument.document_id Asc')));
$documentsAnnotatedIds = Hash::extract($annotatedDocuments, '{n}.AnnotatedDocument.document_id');
$annotatedDocuments = Set::combine($annotatedDocuments, '{n}.AnnotatedDocument.document_id', '{n}.AnnotatedDocument');
// $diff = array_diff($documentsAnnotatedIds, $documentsIds);
$documentsOfPage = Cache::read('documents-page' . $page, 'short');
if (!$documentsOfPage) {
$documentsOfPage = $this->Document->find('all', array('recursive' => -1, 'fields' => array('html', 'id', 'title', 'external_id'), 'conditions' => array('Document.id' => $idsDocumentsOfPage)));
$documentsOfPage = Set::combine($documentsOfPage, '{n}.Document.id', '{n}.Document');
Cache::write('documents-page' . $page . $user_id, $documentsOfPage, 'short');
}
//
// $documentsTitles = Cache::read('documents-titles', 'short');
// if (!$documentsTitles) {
// $documentsTitles = $this->UsersRound->Round->Project->Document->find('all', array(
// 'recursive' => -1,
// 'fields' => array('id', 'title', 'external_id'),
// 'conditions' => array(
// 'Document.id' => $documentsIds,
// )
// ));
// $documentsTitles = Set::combine($documentsTitles, '{n}.Document.id', '{n}.Document.external_idDocument.title');
// Cache::write('documents-titles', $documentsTitles, 'short');
// }
$size = count($idsDocumentsOfPage);
for ($i = 0; $i < $size; $i++) {
$document_id = intval($idsDocumentsOfPage[$i]);
if (!empty($annotatedDocuments[$document_id])) {
if (strlen(trim($annotatedDocuments[$document_id]['text_marked'])) == 0) {
$annotatedDocuments[$document_id]['text_marked'] = $documentsOfPage[$document_id]['html'];
}
// debug(strlen(trim($userRounds[$document_id]['text_marked'])));
// debug($documents[$document_id]['html']);
} else {
if (strlen(trim($documentsOfPage[$document_id]['html'])) !== 0) {
$annotatedDocuments[$document_id] = array('user_id' => $user_id, 'round_id' => $round_id, 'document_id' => $document_id, 'annotation_minutes' => 0);
if ($group_id > 1 && !$isEnd) {
if (empty($annotatedDocuments[$document_id]['html'])) {
// $this->AnnotatedDocument->id = $annotatedDocuments[$document_id]['id'];
$this->AnnotatedDocument->create();
if (!$this->AnnotatedDocument->save($annotatedDocuments[$document_id])) {
debug($annotatedDocuments);
debug($this->AnnotatedDocument->validationErrors);
$this->Session->setFlash(__('ops! error creating AnnotatedDocument '));
throw new Exception();
// $this->redirect($redirect);
}
$annotatedDocuments[$document_id]['id'] = $this->AnnotatedDocument->id;
}
} else {
$annotatedDocuments[$document_id]['id'] = -1;
}
$annotatedDocuments[$document_id]['text_marked'] = $documentsOfPage[$document_id]['html'];
$annotatedDocuments[$document_id]['document_id'] = $document_id;
}
}
$title = "Title: " . $setDocumentsToAnnotateByRound[$document_id]['title'];
if (isset($setDocumentsToAnnotateByRound[$document_id]['external_id'])) {
$title = "ID: " . $setDocumentsToAnnotateByRound[$document_id]['external_id'];
}
$annotatedDocuments[$document_id]['title'] = $title;
}
$documentAssessment = $this->Document->DocumentsAssessment->find('list', array('recursive' => -1, 'fields' => array('document_id', 'document_id'), 'conditions' => array('user_id' => $user_id, 'project_id' => $projectId, 'document_id' => $idsDocumentsOfPage)));
$this->set('documentAssessments', $documentAssessment);
$this->set('annotatedDocuments', $annotatedDocuments);
$triada = array('user_id' => $user_id, 'round_id' => $round_id, 'document_id' => -1, 'users_round_id' => $users_round_id);
$this->set('DocumentsProject', $documentsProject);
} else {
/* ================================================================================= */
/* ==================================No multidocument=============================== */
/* ================================================================================= */
$document = Cache::read('document-id-' . $document_id, 'short');
if (!$document) {
$document = $this->Document->find('first', array('recursive' => -1, 'fields' => array('html', 'title', 'external_id'), 'joins' => array(array('table' => 'documents_projects', 'alias' => 'DocumentsProject', 'type' => 'INNER', 'conditions' => array('DocumentsProject.document_id = Document.id'))), 'conditions' => array('DocumentsProject.project_id' => $projectId, 'DocumentsProject.document_id' => $document_id)));
Cache::write('first-doc-project-id-' . $document_id, $document, 'short');
}
$annotatedDocuments = $this->AnnotatedDocument->find('first', array('recursive' => -1, 'conditions' => array('round_id' => $round_id, 'user_id' => $user_id, 'document_id' => $document_id), 'order' => array('AnnotatedDocument.document_id Asc')));
if (!empty($annotatedDocuments)) {
if (strlen(trim($annotatedDocuments['AnnotatedDocument']['text_marked'])) !== 0) {
$this->set('text', $annotatedDocuments['AnnotatedDocument']['text_marked']);
$this->set('document_annotated_id', $annotatedDocuments['AnnotatedDocument']['id']);
} else {
$this->set('document_annotated_id', -1);
$this->set('text', $document['Document']['html']);
}
} else {
if (!empty($document) && strlen(trim($document['Document']['html'])) !== 0) {
$annotatedDocuments = array('AnnotatedDocument' => array('user_id' => $user_id, 'round_id' => $round_id, 'document_id' => $document_id, 'text_marked' => $document['Document']['html'], 'annotation_minutes' => 0));
if ($group_id > 1 && !$isEnd) {
if (!$this->AnnotatedDocument->save($annotatedDocuments)) {
debug($this->AnnotatedDocument->validationErrors);
$this->Session->setFlash(__('ops! error creating AnnotatedDocument '));
$this->redirect($redirect);
}
$annotatedDocuments['AnnotatedDocument']['id'] = $this->AnnotatedDocument->id;
} else {
$annotatedDocuments['AnnotatedDocument']['id'] = -1;
}
$title = "Title: " . $setDocumentsToAnnotateByRound[$document_id]['title'];
if (isset($setDocumentsToAnnotateByRound[$document_id]['external_id'])) {
$title = "ID: " . $setDocumentsToAnnotateByRound[$document_id]['external_id'];
}
$annotatedDocuments[$document_id]['title'] = $title;
$this->set('document_annotated_id', $annotatedDocuments['AnnotatedDocument']['id']);
$this->set('text', $document['Document']['html']);
} else {
$this->Session->setFlash(__('There are no documents associated with this project'));
$this->redirect($redirect);
}
}
if ($group_id > 1) {
//delete annotation
$deleteCascade = Configure::read('deleteCascade');
$this->Annotation->deleteAll(array('Annotation.round_id' => $round_id, 'Annotation.user_id' => $user_id, 'Annotation.init IS NULL', 'Annotation.end IS NULL'), $deleteCascade);
}
$this->paginate = array('recursive' => -1, 'order' => array('DocumentsProject.document_id' => 'asc'), 'conditions' => array('document_id' => array_keys($setDocumentsToAnnotateByRound)), 'limit' => 1, 'offset' => $offset);
$this->set('DocumentsProject', $this->paginate($this->DocumentsProject, array('DocumentsProject.project_id' => $projectId)));
$title = "Title: " . $document['Document']['title'];
if (isset($document['Document']['external_id'])) {
$title = "ID: " . $document['Document']['external_id'];
}
$this->set('title', $title);
//variable que contiene User.round.Document.user_round_id
$triada = array('user_id' => $user_id, 'round_id' => $round_id, 'document_id' => $document_id, 'users_round_id' => $users_round_id, 'document_annotated_id' => $annotatedDocuments['AnnotatedDocument']['id']);
}
/* ======================================= */
$highlight = 2;
if (isset($round['Round']['highlight'])) {
$highlight = $round['Round']['highlight'];
}
$trim_helper = $round['Round']['trim_helper'];
$whole_word_helper = $round['Round']['whole_word_helper'];
$punctuation_helper = $round['Round']['punctuation_helper'];
//escribimos la variable en una variable de session puesto que nos sera util a la hora de verificar la fecha cuando se intente crear anotaciones o editarlas
$this->Session->write('isEnd', $isEnd);
//esta variable sera usada para constatar que no se intentan modificar dichas variables
$this->Session->write('triada', $triada);
// App::uses('CakeTime', 'Utility');
// $date = CakeTime::format('+0 seconds', '%Y-%m-%d %H:M:%S');
$relations = Cache::read('relations-project-id-' . $projectId, 'short');
if (!$relations) {
$relations = $this->Relation->find('all', array('recursive' => -1, 'conditions' => array('Relation.project_id' => $projectId)));
Cache::write('relations-project-id-' . $projectId, $relations, 'short');
}
$types = Cache::read('usersRoundTypes-round-id-' . $round_id, 'short');
if (!$types) {
$types = $this->Type->find('all', array('recursive' => -1, 'contain' => array('Question'), 'joins' => array(array('table' => 'types_rounds', 'alias' => 'TypesRound', 'type' => 'LEFT', 'conditions' => array('TypesRound.type_id = Type.id'))), 'conditions' => array('TypesRound.round_id' => $round_id)));
Cache::write('usersRoundTypes-round-id-' . $round_id, $types, 'short');
}
if (!$find) {
$relationIds = Hash::extract($relations, '{n}.Relation.id');
$annotationsInterRelations = $this->AnnotationsInterRelation->find('all', array('recursive' => -1, 'fields' => array('id', 'relation_id', 'AnnotationB.annotated_text', 'AnnotationA.annotated_text', 'AnnotationB.type_id', 'AnnotationA.type_id', 'AnnotationB.document_id', 'AnnotationA.document_id', 'AnnotationB.id', 'AnnotationA.id'), 'joins' => array(array('table' => 'annotations', 'alias' => 'AnnotationA', 'type' => 'INNER', 'conditions' => array('AnnotationA.id = AnnotationsInterRelation.annotation_a_id', 'AnnotationsInterRelation.relation_id' => $relationIds, 'AnnotationA.document_id' => $idsDocumentsOfPage)), array('table' => 'annotations', 'alias' => 'AnnotationB', 'type' => 'INNER', 'conditions' => array('AnnotationB.id = AnnotationsInterRelation.annotation_b_id', 'AnnotationsInterRelation.relation_id' => $relationIds, 'AnnotationB.document_id' => $idsDocumentsOfPage)))));
$this->set('relationsMap', Set::combine($relations, '{n}.Relation.id', '{n}.Relation'));
$this->set('typesMap', Set::combine($types, '{n}.Type.id', '{n}.Type'));
$this->set('documentsMap', $documentsOfPage);
$this->set('annotationsInterRelations', $annotationsInterRelations);
$this->set('isReviewAutomaticAnnotation', $isReviewAutomaticAnnotation);
}
if (!$this->Session->check('start_step') && $group_id > 1) {
$this->Session->write('start_step', new DateTime(''));
}
$this->set('document_id', $document_id);
$this->set('findMode', $find);
$this->set('isMultiDocument', $isMultiDocument);
/* ================================================================================= */
/* ==================================No Ajax================================== */
/* ================================================================================= */
if (!$this->request->is('ajax')) {
if (empty($types)) {
$this->Session->setFlash(__('There are no types associated with this round'));
return $this->redirect($redirect);
}
//buscamos el primer documento del proyecto
$nonTypes = Cache::read('nonTypes-round-id-' . $round_id, 'short');
if (!$nonTypes) {
$listTypes = Set::classicExtract($types, '{n}.Type.id');
$nonTypes = $this->Type->find('list', array('fields' => 'Type.name', 'recursive' => -1, 'conditions' => array('Type.project_id' => $projectId, "NOT" => array('Type.id' => $listTypes))));
Cache::write('nonTypes-round-id-' . $round_id, $nonTypes, 'short');
}
// debug($nonTypes);
// throw new Exception;
// debug($setDocumentsToAnnotateByRound);
$this->set('documentList', $documentsListByRound);
if ($page > 0) {
$page--;
}
$this->set('documentsPerPage', Configure::read('documentsPerPage'));
$this->set('documentsMap', array_flip($idsDocumentsToAnnotateByRound));
$this->set('relations', $relations);
$this->set('operation', $operation);
$this->set('page', $page);
$this->set('round_id', $round_id);
$this->set('project_id', $projectId);
$this->set('types', $types);
//lo utilizaremos para eliminar las anotaciones de un tipo eliminado
$this->set('nonTypes', $nonTypes);
$this->set('isEnd', $isEnd);
$this->set('user_id', $user_id);
if (isset($document['Document']['external_id'])) {
$title = "ID: " . $document['Document']['external_id'];
}
$this->set('title', $title);
$this->set('trim_helper', $trim_helper);
$this->set('highlight', $highlight);
$this->set('whole_word_helper', $whole_word_helper);
$this->set('punctuation_helper', $punctuation_helper);
$this->set('annotationMenu', true);
$this->render("start");
} else {
$this->layout = 'ajax';
// $title = "Title: " . $document['Document']['title'];
// if (isset($document['Document']['external_id'])) {
// $title = "ID: " . $document['Document']['external_id'];
// }
$this->set('title', $title);
$this->set('isEnd', $isEnd);
$this->render("ajax");
}
// $this->autoRender = false;
}
/**
* Days in theme
* @param int $theme_id
*/
public function days($theme_id = null, $user_id = null)
{
if (!$theme_id) {
return;
}
$options = array('recursive' => -1, 'conditions' => array('Day.theme_id' => $theme_id), 'order' => array('data ASC'));
$rows = $this->Day->find('all', $options);
foreach ($rows as $key => $row) {
$row['Day']['isFuture'] = false;
$row['Day']['isPast'] = false;
$row['Day']['isToday'] = false;
$row['Day']['comments'] = $this->Comment->find('count', array('conditions' => array('Comment.user_id' => !$this->isUser() ? $user_id : $this->getUserId(), 'Comment.day_id' => $row['Day']['id'])));
if (CakeTime::isFuture($row['Day']['data'])) {
$row['Day']['isFuture'] = true;
}
if (CakeTime::isPast($row['Day']['data'])) {
$row['Day']['isPast'] = true;
}
if (CakeTime::isToday($row['Day']['data'])) {
$row['Day']['isToday'] = true;
}
$data[] = $row['Day'];
}
$this->set($data);
$this->set('_serialize', array_keys($data));
}
public function start2($round_id = null, $user_id = null, $find = null)
{
$group_id = $this->Session->read('group_id');
if ($group_id > 1) {
$redirect = array('controller' => 'rounds', 'action' => 'index');
$user_id = $this->Session->read('user_id');
} else {
if (!$this->Session->check('users_round_id')) {
$this->Session->write('users_round_id', $user_id);
} else {
$last_user_id = $this->Session->read('users_round_id');
if (isset($user_id) && $user_id != $last_user_id) {
$this->Session->write('users_round_id', $user_id);
}
$user_id = $this->Session->read('users_round_id');
}
$redirect = array('controller' => 'rounds', 'action' => 'view', $round_id);
}
$multiDocument = Configure::read('documentsPerPage') > 1;
if ($find && $group_id == 1) {
$multiDocument = false;
} else {
$find = false;
}
$round = Cache::read('round-id-' . $round_id, 'short');
if (!$round) {
//buscamos el round para saber la fecha de finalizacion
$round = $this->UsersRound->Round->find('first', array('recursive' => -1, 'conditions' => array('Round.id' => $round_id)));
Cache::write('round-id-' . $round_id, $round, 'short');
}
if (empty($round)) {
throw new NotFoundException(__('Invalid round'));
}
App::uses('CakeTime', 'Utility');
$isEnd = CakeTime::isPast($round['Round']['ends_in_date']);
if ($group_id > 1) {
if (isset($round['Round']['start_document'])) {
$offset = $round['Round']['start_document'] - 1;
if ($offset < 0) {
$offset = 0;
}
$limit = $round['Round']['end_document'];
} else {
$offset = 0;
$limit = 0;
}
} else {
$offset = 0;
$limit = 0;
$isEnd = true;
}
$projectId = $round['Round']['project_id'];
$onlyAnnotated = false;
if ($group_id == 1 || $isEnd) {
$onlyAnnotated = true;
}
//buscamos todos los documentos del proyecto para el selector
if ($onlyAnnotated) {
$documents = Cache::read('documents-list-project-id-onlyAnnotated' . $round_id . '-' . $user_id, 'short');
} else {
$documents = Cache::read('documents-list-project-id-' . $projectId, 'short');
}
if (!$documents) {
if ($onlyAnnotated) {
$documentsAll = $this->UsersRound->Round->Project->Document->find('all', array('recursive' => -1, 'fields' => array('id', 'title', 'external_id'), 'joins' => array(array('table' => 'users_rounds', 'alias' => 'UsersRounds', 'type' => 'LEFT', 'conditions' => array('UsersRounds.document_id = Document.id', 'UsersRounds.text_marked IS NOT NULL'))), 'conditions' => array('UsersRounds.round_id' => $round_id, 'UsersRounds.user_id' => $user_id), 'limit' => $limit, 'offset' => $offset, 'order' => array('document_id Asc')));
} else {
$documentsAll = $this->UsersRound->Round->Project->Document->find('all', array('recursive' => -1, 'fields' => array('id', 'title', 'external_id'), 'joins' => array(array('table' => 'documents_projects', 'alias' => 'DocumentsProject', 'type' => 'INNER', 'conditions' => array('DocumentsProject.document_id = Document.id'))), 'conditions' => array('DocumentsProject.project_id' => $projectId), 'limit' => $limit, 'offset' => $offset, 'order' => array('document_id Asc')));
}
$documents = array();
$tam = count($documentsAll);
for ($index = 0; $index < $tam; $index++) {
$id = $documentsAll[$index]['Document']['id'];
$title = "";
if (isset($documentsAll[$index]['Document']['external_id'])) {
$title .= $documentsAll[$index]['Document']['external_id'] . " - ";
}
$title .= $documentsAll[$index]['Document']['title'];
$documents[$id] = $title;
}
if ($onlyAnnotated) {
Cache::write('documents-list-project-id-onlyAnnotated' . $round_id . '-' . $user_id, $documents, 'short');
} else {
Cache::write('documents-list-project-id-' . $projectId, $documents, 'short');
}
}
$ids = array_keys($documents);
if (isset($this->params['named']['page'])) {
$page = $this->params['named']['page'];
if ($page <= 0) {
$page = 1;
}
if (!$multiDocument) {
$document_id = $ids[$page - 1];
}
} else {
$page = 1;
if (!$multiDocument) {
$document_id = $ids[0];
}
}
/* ===============No Ajax=================== */
if (!$this->request->is('ajax')) {
$types = Cache::read('usersRoundTypes-round-id-' . $round_id, 'short');
if (!$types) {
$types = $this->UsersRound->Round->Type->find('all', array('recursive' => -1, 'contain' => array('Question'), 'joins' => array(array('table' => 'types_rounds', 'alias' => 'TypesRound', 'type' => 'LEFT', 'conditions' => array('TypesRound.type_id = Type.id'))), 'conditions' => array('TypesRound.round_id' => $round_id)));
Cache::write('usersRoundTypes-round-id-' . $round_id, $types, 'short');
}
if (empty($types)) {
$this->Session->setFlash(__('There are no types associated with this round'));
return $this->redirect($redirect);
}
//buscamos el primer documento del proyecto
$nonTypes = Cache::read('nonTypes-round-id-' . $round_id, 'short');
if (!$nonTypes) {
$listTypes = Set::classicExtract($types, '{n}.Type.id');
$nonTypes = $this->UsersRound->Round->Type->find('list', array('fields' => 'Type.name', 'recursive' => -1, 'conditions' => array('Type.project_id' => $projectId, "NOT" => array('Type.id' => $listTypes))));
Cache::write('nonTypes-round-id-' . $round_id, $nonTypes, 'short');
}
$relations = Cache::read('relations-project-id-' . $projectId, 'short');
if (!$relations) {
$relations = $this->UsersRound->Round->Project->Relation->find('all', array('recursive' => -1, 'conditions' => array('Relation.project_id' => $projectId)));
Cache::write('relations-project-id-' . $projectId, $relations, 'short');
}
}
if ($multiDocument) {
/* ================================================================================= */
/* ==================================Multidocument================================== */
/* ================================================================================= */
$this->paginate = array('recursive' => -1, 'order' => array('DocumentsProject.document_id' => 'asc'), 'conditions' => array('document_id' => array_keys($documents)), 'limit' => Configure::read('documentsPerPage'), 'offset' => $offset);
$documentsProject = $this->paginate($this->UsersRound->Round->Project->DocumentsProject, array('DocumentsProject.project_id' => $projectId));
$documentsIds = Hash::extract($documentsProject, '{n}.DocumentsProject.document_id');
if (empty($documentsIds)) {
$this->Session->setFlash(__('There are no documents associated with this project'));
$this->redirect($redirect);
}
if ($group_id > 1) {
//delete annotation
$deleteCascade = Configure::read('deleteCascade');
$this->UsersRound->Annotation->deleteAll(array('Annotation.round_id' => $round_id, 'Annotation.user_id' => $user_id, 'Annotation.document_id' => $documentsIds, 'Annotation.init IS NULL', 'Annotation.end IS NULL'), $deleteCascade);
}
$userRounds = $this->UsersRound->find('all', array('fields' => array('id', 'document_id', 'text_marked'), 'recursive' => -1, 'conditions' => array('round_id' => $round_id, 'user_id' => $user_id, 'document_id' => $documentsIds), 'order' => array('UsersRound.document_id Asc')));
$documentsAnnotatedIds = Hash::extract($userRounds, '{n}.UsersRound.document_id');
$userRounds = Set::combine($userRounds, '{n}.UsersRound.document_id', '{n}.UsersRound');
// $diff = array_diff($documentsAnnotatedIds, $documentsIds);
$documents = Cache::read('documents-page' . $page, 'short');
if (!$documents) {
$documents = $this->UsersRound->Round->Project->Document->find('all', array('recursive' => -1, 'fields' => array('html', 'id', 'title', 'external_id'), 'conditions' => array('Document.id' => $documentsIds)));
$documents = Set::combine($documents, '{n}.Document.id', '{n}.Document');
Cache::write('documents-page' . $page, $documents, 'short');
}
// $documentsTitles = Cache::read('documents-titles-page' . $page, 'short');
// if (!$documentsTitles) {
// $documentsTitles = $this->UsersRound->Round->Project->Document->find('all', array(
// 'recursive' => -1,
// 'fields' => array('id', 'title', 'external_id'),
// 'conditions' => array(
// 'Document.id' => $documentsIds,
// )
// ));
// $documentsTitles = Set::combine($documentsTitles, '{n}.Document.id', '{n}.Document');
// Cache::write('documents-titles-page' . $page, $documentsTitles, 'short');
// }
$size = count($documentsIds);
for ($i = 0; $i < $size; $i++) {
$document_id = intval($documentsIds[$i]);
if (!empty($userRounds[$document_id])) {
if (strlen(trim($userRounds[$document_id]['text_marked'])) == 0) {
$userRounds[$document_id]['text_marked'] = $documents[$document_id]['html'];
}
// debug(strlen(trim($userRounds[$document_id]['text_marked'])));
// debug($documents[$document_id]['html']);
} else {
if (strlen(trim($documents[$document_id]['html'])) !== 0) {
$userRounds[$document_id] = array('user_id' => $user_id, 'round_id' => $round_id, 'document_id' => $document_id, 'text_marked' => $documents[$document_id]['html']);
if ($group_id > 1) {
$this->UsersRound->create();
if (!$this->UsersRound->save($userRounds[$document_id])) {
debug($this->UsersRound->validationErrors);
$this->Session->setFlash(__('ops! error creating user round ' . $this->UsersRound->validationErrors));
$this->redirect($redirect);
}
$userRounds[$document_id]['id'] = $this->UsersRound->id;
}
$userRounds[$document_id]['text_marked'] = $documents[$document_id]['html'];
$userRounds[$document_id]['document_id'] = $document_id;
}
}
$title = "Title: " . $documents[$document_id]['title'];
if (isset($documents[$document_id]['external_id'])) {
$title = "ID: " . $documents[$document_id]['external_id'];
}
$userRounds[$document_id]['title'] = $title;
}
$documentAssessment = $this->UsersRound->Round->Project->Document->DocumentsAssessment->find('list', array('recursive' => -1, 'fields' => array('document_id', 'document_id'), 'conditions' => array('user_id' => $user_id, 'project_id' => $projectId, 'document_id' => $ids)));
$this->set('documentAssessments', $documentAssessment);
$this->set('userRounds', $userRounds);
$triada = array('user_id' => $user_id, 'round_id' => $round_id, 'document_id' => -1, 'users_round_id' => -1);
$this->set('DocumentsProject', $documentsProject);
} else {
/* ================================================================================= */
/* ==================================No multidocument=============================== */
/* ================================================================================= */
$document = Cache::read('document-id-' . $document_id, 'short');
if (!$document) {
$document = $this->UsersRound->Round->Project->Document->find('first', array('recursive' => -1, 'fields' => array('html', 'title', 'external_id'), 'joins' => array(array('table' => 'documents_projects', 'alias' => 'DocumentsProject', 'type' => 'INNER', 'conditions' => array('DocumentsProject.document_id = Document.id'))), 'conditions' => array('DocumentsProject.project_id' => $projectId, 'DocumentsProject.document_id' => $document_id)));
Cache::write('first-doc-project-id-' . $document_id, $document, 'short');
}
$userRound = $this->UsersRound->find('first', array('recursive' => -1, 'conditions' => array('round_id' => $round_id, 'user_id' => $user_id, 'document_id' => $document_id), 'order' => array('UsersRound.document_id Asc')));
if (!empty($userRound)) {
if (strlen(trim($userRound['UsersRound']['text_marked'])) !== 0) {
$this->set('text', $userRound['UsersRound']['text_marked']);
} else {
//para el primer user round vacio
$this->set('text', $document['Document']['html']);
}
} else {
if (!empty($document) && strlen(trim($document['Document']['html'])) !== 0) {
$userRound = array('UsersRound' => array('user_id' => $user_id, 'round_id' => $round_id, 'document_id' => $document_id, 'text_marked' => $document['Document']['html']));
if ($group_id > 1) {
if (!$this->UsersRound->save($userRound)) {
debug($this->UsersRound->validationErrors);
$this->Session->setFlash(__('ops! error creating user round ' . $this->UsersRound->validationErrors));
$this->redirect($redirect);
}
}
$userRound['UsersRound']['id'] = $this->UsersRound->id;
$this->set('text', $document['Document']['html']);
} else {
$this->Session->setFlash(__('There are no documents associated with this project'));
$this->redirect($redirect);
}
}
if ($group_id > 1) {
//delete annotation
$deleteCascade = Configure::read('deleteCascade');
$this->UsersRound->Annotation->deleteAll(array('Annotation.round_id' => $userRound['UsersRound']['round_id'], 'Annotation.user_id' => $user_id, 'Annotation.users_round_id' => $userRound['UsersRound']['id'], 'Annotation.init IS NULL', 'Annotation.end IS NULL'), $deleteCascade);
}
$this->paginate = array('recursive' => -1, 'order' => array('DocumentsProject.document_id' => 'asc'), 'conditions' => array('document_id' => array_keys($documents)), 'limit' => 1, 'offset' => $offset);
$this->set('DocumentsProject', $this->paginate($this->UsersRound->Round->Project->DocumentsProject, array('DocumentsProject.project_id' => $projectId)));
$title = "Title: " . $document['Document']['title'];
if (isset($document['Document']['external_id'])) {
$title = "ID: " . $document['Document']['external_id'];
}
$this->set('title', $title);
$this->set('users_round_id', $userRound['UsersRound']['id']);
//variable que contiene User.round.Document.user_round_id
$triada = array('user_id' => $user_id, 'round_id' => $round_id, 'document_id' => $document_id, 'users_round_id' => $userRound['UsersRound']['id']);
}
$trim_helper = $round['Round']['trim_helper'];
$whole_word_helper = $round['Round']['whole_word_helper'];
$punctuation_helper = $round['Round']['punctuation_helper'];
//escribimos la variable en una variable de session puesto que nos sera util a la hora de verificar la fecha cuando se intente crear anotaciones o editarlas
$this->Session->write('isEnd', $isEnd);
//esta variable sera usada para constatar que no se intentan modificar dichas variables
$this->Session->write('triada', $triada);
// App::uses('CakeTime', 'Utility');
// $date = CakeTime::format('+0 seconds', '%Y-%m-%d %H:M:%S');
if (!$this->Session->check('start_step') && $group_id > 1) {
$this->Session->write('start_step', new DateTime(''));
}
$this->set('document_id', $document_id);
$this->set('multiDocument', $multiDocument);
$this->set('findMode', $find);
if (!$this->request->is('ajax')) {
$this->set('documents', array_values($documents));
if ($page > 0) {
$page--;
}
$this->set('page', $page);
$this->set('round_id', $round_id);
$this->set('project_id', $projectId);
$this->set('types', $types);
$this->set('relations', $relations);
//lo utilizaremos para eliminar las anotaciones de un tipo eliminado
$this->set('nonTypes', $nonTypes);
$this->set('isEnd', $isEnd);
$this->set('user_id', $user_id);
if (isset($document['Document']['external_id'])) {
$title = "ID: " . $document['Document']['external_id'];
}
$this->set('title', $title);
$this->set('trim_helper', $trim_helper);
$this->set('whole_word_helper', $whole_word_helper);
$this->set('punctuation_helper', $punctuation_helper);
$this->set('annotationMenu', true);
$this->render("start");
} else {
$this->layout = 'ajax';
$title = "Title: " . $document['Document']['title'];
if (isset($document['Document']['external_id'])) {
$title = "ID: " . $document['Document']['external_id'];
}
$this->set('title', $title);
$this->set('isEnd', $isEnd);
$this->render("ajax");
}
// $this->autoRender = false;
}
/**
*Agrega entrada a la bitácora actual
*/
public function addEntry($uId, $pId)
{
if ($this->request->is('post') || $this->request->is('get')) {
$record = $this->Record->findByUserIdAndProjectIdAndActiva($uId, $pId, true);
$this->set('proyecto', $this->Record->Project->findById($pId));
$this->set('usuario', $this->Record->User->findById($uId));
if ($record) {
if (CakeTime::isPast($record['Record']['fecha_fin'])) {
//Se cambia para que no esté activa la bitácora actual
$this->Record->id = $record['Record']['id'];
$this->Record->save(array('activa' => false));
//Se crea la nueva bitácora
$this->Record->create();
$entrada = $this->request->data;
//como las bitácoras son semanales hay que hacerlo con fechas secuenciales
$entrada['Record']['fecha_inicio'] = date("Y-m-d", strtotime("+1 days", strtotime($record['Record']['fecha_fin'])));
$entrada['Record']['fecha_fin'] = date("Y-m-d", strtotime("+8 days", strtotime($record['Record']['fecha_fin'])));
$entrada['Record']['project_id'] = $pId;
$entrada['Record']['user_id'] = $uId;
if ($this->Record->save($entrada)) {
$RecId = $this->Record->id;
$this->Record->RecordEntry->create();
$this->Record->RecordEntry->save(array('RecordEntry' => array('timestamp' => CakeTime::format(time(), '%B %e, %Y %H:%M %p'), 'cuerpo' => $this->request->data['Record']['cuerpo'], 'record_id' => $RecId)));
$this->Flash->success('Nueva bitácora creada.');
if ($this->Auth->user()['rol'] == 3) {
return $this->redirect(array('pm' => true, 'action' => 'displayRecords', $uId, $pId));
}
return $this->redirect(array('action' => 'displayRecords', $uId, $pId));
} else {
$this->Flash->set(__('No se puedo crear la nueva bitácora.'));
}
} else {
if ($this->request->is('post') && $this->request->data) {
$this->Record->id = $record['Record']['id'];
$entrada = $this->request->data;
if ($this->Record->save($entrada)) {
$RecId = $this->Record->id;
$this->Record->RecordEntry->create();
$this->Record->RecordEntry->save(array('RecordEntry' => array('timestamp' => CakeTime::format(time(), '%B %e, %Y %H:%M %p'), 'cuerpo' => $this->request->data['Record']['cuerpo'], 'record_id' => $RecId)));
$this->Flash->success('Entrada añadida.');
if ($this->Auth->user()['rol'] == 3) {
return $this->redirect(array('pm' => true, 'action' => 'displayRecords', $uId, $pId));
}
return $this->redirect(array('action' => 'displayRecords', $uId, $pId));
} else {
$this->Flash->set(__('No se puedo salvar la entrada.'));
}
}
}
} else {
$this->Record->create();
$entrada = $this->request->data;
$entrada['Record']['fecha_inicio'] = CakeTime::format(time(), '%y-%m-%d');
$entrada['Record']['fecha_fin'] = CakeTime::format('+7 days', '%y-%m-%d');
$entrada['Record']['project_id'] = $pId;
$entrada['Record']['user_id'] = $uId;
if ($this->Record->save($entrada)) {
$RecId = $this->Record->id;
$this->Record->RecordEntry->create();
$this->Record->RecordEntry->save(array('RecordEntry' => array('timestamp' => CakeTime::format(time(), '%B %e, %Y %H:%M %p'), 'cuerpo' => $this->request->data['Record']['cuerpo'], 'record_id' => $RecId)));
$this->Flash->success('Bitácora creada.');
if ($this->Auth->user()['rol'] == 3) {
return $this->redirect(array('pm' => true, 'action' => 'displayRecords', $uId, $pId));
}
return $this->redirect(array('action' => 'displayRecords', $uId, $pId));
} else {
$this->Flash->set(__('No se puedo crear la bitácora.'));
}
}
}
}
function automaticAnnotation()
{
$this->Job = $this->Round->User->Job;
$this->UsersRound = $this->Round->UsersRound;
$this->User = $this->Round->User;
$enableJavaActions = Configure::read('enableJavaActions');
if ($this->request->is('post') && $enableJavaActions) {
$user_id = $this->request->data['user_id'];
$round_id = $this->request->data['round_id'];
$group_id = $this->Session->read('group_id');
if ($group_id > 1) {
$user_id = $this->Session->read('user_id');
$this->User->id = $user_id;
}
$this->Round->id = $this->request->data['round_id'];
$userRound = $this->UsersRound->find('first', array('recursive' => -1, 'fields' => array('id', 'state'), 'conditions' => array('user_id' => $user_id, 'round_id' => $round_id)));
if (empty($userRound)) {
throw new NotFoundException(__('Invalid Round'));
}
$operation = $this->request->data['operation'];
App::uses('CakeTime', 'Utility');
$group_id = $this->Session->read('group_id');
$isEnd = false;
if ($group_id > 1) {
$isEnd = CakeTime::isPast($this->Round->field('ends_in_date'));
}
// $this->Job->find->hasAny(array('user_id'))
if ($operation == -1) {
$this->killJob($this->request->data['job_id']);
} else {
$programName = "Automatic_Dictionary_Annotation";
if (!$isEnd && $userRound['UsersRound']['state'] == 0) {
$this->Job->create();
$data = array('user_id' => $user_id, 'round_id' => $round_id, 'percentage' => 0, '' => $programName, 'status' => 'Starting...');
if ($this->Job->save($data)) {
$id = $this->Job->id;
switch ($operation) {
// Kill process
case -1:
break;
// Anotacion en base a las anotaciones del usuario.
// Anotacion en base a las anotaciones del usuario.
case 1:
$operationId = 6;
$types = json_encode($this->request->data['types']);
if (!empty($types)) {
$arguments = "{$operationId}\t{$id}\t{$user_id}\t{$round_id}\t{$types}";
return $this->sendJob($id, $programName, $arguments);
} else {
return $this->correctResponseJson(json_encode(array('success' => false, 'message' => "The task could not be performed successfully. Other operation is in progress. Please select at least one type")));
}
break;
case 2:
$operationId = 9;
App::uses('Folder', 'Utility');
$dictionary = new File($this->request->data['File']['tmp_name'], false, 0777);
if ($dictionary->exists()) {
$path = Configure::read('uploadFolder');
$newPath = $path . uniqid();
$dictionary->copy($newPath);
$project_id = $this->Round->field('project_id');
$arguments = "{$operationId}\t{$id}\t{$user_id}\t{$round_id}\t{$project_id}\t{$newPath}";
$this->sendJob($id, $programName, $arguments, false);
if ($this->request->is("ajax")) {
return $this->correctResponseJson(json_encode(array('success' => true)));
} else {
return $this->redirect(array('controller' => 'jobs', 'action' => 'index'));
}
break;
}
}
}
}
if ($this->request->is("ajax")) {
return $this->correctResponseJson(json_encode(array('success' => false, 'message' => "The task could not be performed successfully. ")));
} else {
$this->Session->setFlash(__('The task could not be performed successfully'));
return $this->redirect(array('controller' => 'jobs', 'action' => 'index'));
}
}
}
}
function uploadFinalPredictions()
{
$this->Cookie = $this->Components->load('Cookie');
$this->Cookie->type('rijndael');
// $this->Cookie->time = '999 hours';
if ($this->request->is(array('post', 'put'))) {
// debug($this->request->data);
$email = $this->request->data['Participant']['email'];
$code = $this->request->data['Participant']['code'];
$task = $this->request->data['Participant']["task"];
$run = $this->request->data['Participant']["run"];
$maxUploadTask = Configure::read('max_participant_task_upload');
$tasks = Configure::read('biocreative_tasks');
$finalDate = Configure::read('final_date_to_upload_tasks');
$startDate = Configure::read('initial_date_to_upload_tasks');
if (!in_array($task, $tasks) && $run < 0 && $run > 5) {
$this->Session->setFlash("Incorrect data");
return $this->redirect(array('controller' => 'Participants', 'action' => 'analysis'));
}
App::uses('CakeTime', 'Utility');
$isEnd = CakeTime::isPast($finalDate);
$isFuture = CakeTime::isFuture($startDate);
if ($isEnd || $isFuture) {
$this->Session->setFlash("The final delivery date has expired");
return $this->redirect(array('controller' => 'Participants', 'action' => 'analysis'));
}
$project_id = -1;
if ($this->data['Participant']['remember_me'] && isset($code) && isset($email)) {
$cookie = array();
$cookie['email'] = $email;
$cookie['code'] = $code;
$this->Cookie->write('participantData', $cookie, true, '+2 weeks');
} else {
if ($this->Cookie->check('participantData')) {
$this->Cookie->destroy('participantData');
}
}
App::uses('Folder', 'Utility');
App::uses('File', 'Utility');
// debug($this->request->data);
if ($this->request->data['Participant']['final_prediction']['size'] > 0) {
/* ============================================= */
/* ==============Load analysis=================== */
/* ============================================= */
if ($this->request->data['Participant']['final_prediction']['size'] > $this->filesize2bytes(Configure::read('max_file_size'))) {
$this->Session->setFlash("The file can not be more than " . Configure::read('max_file_size'));
return $this->redirect(array('controller' => 'Participants', 'action' => 'analysis'));
}
$file = $this->request->data['Participant']['final_prediction']['name'];
if (pathinfo($file, PATHINFO_EXTENSION) != 'tsv') {
$this->Session->setFlash("The file must be in TSV format");
return $this->redirect(array('controller' => 'Participants', 'action' => 'analysis'));
}
$file = new File($this->request->data['Participant']['final_prediction']['tmp_name']);
if ($file->readable()) {
$content = $file->read();
$file->close();
$lines = explode("\n", $content);
$incorrectFormat = empty($lines);
$count = 0;
$size = count($lines);
$correctColumns = 5;
if ($task == "CPD") {
$correctColumns = 4;
}
for ($index = 0; $index < $size; $index++) {
if (strlen(trim($lines[$index])) > 0) {
if (!$incorrectFormat) {
$columns = explode("\t", $lines[$index]);
for ($i = 0; $i < count($columns); $i++) {
if (strlen(trim($columns[$i])) == 0) {
$incorrectFormat = true;
}
}
$incorrectFormat = $incorrectFormat || sizeof($columns) != $correctColumns;
$count++;
} else {
break;
}
}
}
// $correctFormat = $this->correctTsvFormat($file, 5);
if ($incorrectFormat) {
// $count=$this->incorrecLineTsvFormat($file);
if ($task == "CPD") {
$this->Session->setFlash("Incorrect content file. Line {$count} is incorrect. " . "Content file must be contain 4 columns");
} else {
$this->Session->setFlash("Incorrect content file. Line {$count} is incorrect. " . "Content file must be in this format WO2009026621A1->A:12:24->1->0.99->paliperidone");
}
return $this->redirect(array('controller' => 'Participants', 'action' => 'analysis'));
}
$participant = $this->Participant->find('first', array("recursive" => -1, "fields" => array("id", "team_id"), "conditions" => array('Participant.email' => $email, 'Participant.code' => $code)));
$participantID = $participant["Participant"]["id"];
$team_id = $participant["Participant"]["team_id"];
$this->request->data['Participant']['id'] = $participantID;
$this->participantSaveConnection($this->request->data['Participant'], "uploadTeamPrediction");
$path = Configure::read('participantsPath');
$path = $path . DS . $task . DS . $team_id;
$dir = new Folder($path, true, 0755);
$tempPath = $this->request->data['Participant']['final_prediction']['tmp_name'];
$file = new File($tempPath);
if ($file->readable()) {
$content = $file->read();
$newPath = $dir->pwd() . DS . "{$run}.tsv";
$file->copy($newPath);
$path = $newPath;
chmod($newPath, 0200);
$data = array('participant_id' => $participantID, 'biocreative_task' => $task, 'run' => $run);
$finalfile = $this->Participant->FinalPrediction->find('first', array("conditions" => $data, 'fields' => 'id'));
if (!empty($finalfile)) {
$this->Participant->FinalPrediction->id = $finalfile['FinalPrediction']['id'];
$this->Session->setFlash("The file has been updated successfully", "success");
$type = "updated";
} else {
$this->Participant->FinalPrediction->create();
$this->Session->setFlash("The file has been created successfully", "success");
$type = "uploaded";
}
$data = array('participant_id' => $participantID, 'run' => $run, 'email' => $email, 'biocreative_task' => $task, 'file' => $content, 'file_name' => $this->request->data['Participant']['final_prediction']['name']);
if (!$this->Participant->FinalPrediction->save($data)) {
$this->Session->setFlash("File could not be saved");
return $this->redirect(array('controller' => 'Participants', 'action' => 'analysis'));
} else {
$this->sendMailWithAttachment("finalPredictionSuccess", $email, "[MARKYT - BIOCREATIVE V (CHEMDNER)] Final submision", array("run" => $run, "type" => $type, "task" => $task), array("{$run}.tsv" => $tempPath));
}
return $this->redirect(array('controller' => 'Participants', 'action' => 'analysis'));
}
} else {
throw new Exception("Ops! file could not be readed");
}
} else {
$this->Session->setFlash("One team prediction file is needed");
return $this->redirect(array('controller' => 'Participants', 'action' => 'analysis'));
}
}
}
