// Reset types $types = Input::Get('type', 'array', array()); AuthorAssignedType::ResetAuthorAssignedTypes($author->getId()); foreach ($types as $type) { $author->setType($type); } $author->setSkype(Input::Get('skype')); $author->setJabber(Input::Get('jabber')); $author->setAim(Input::Get('aim')); $author->setEmail(Input::Get('email')); $authorBiography = array(); $authorBiography['biography'] = Input::Get("txt_biography", "string"); $authorBiography['language'] = Input::Get("lang", "int", 0); $authorBiography['first_name'] = Input::Get("lang_first_name"); $authorBiography['last_name'] = Input::Get("lang_last_name"); $author->setBiography($authorBiography); if ($uploadFileSpecified) { $attributes = array(); $image = Image::OnImageUpload($_FILES['file'], $attributes); if (PEAR::isError($image)) { camp_html_add_msg($image->getMessage()); } else { $author->setImage($image->getImageId()); } } $aliases = Input::Get("alias", "array"); if (!empty($aliases)) { $author->setAliases($aliases); } camp_html_add_msg($translator->trans("Author saved.", array(), 'users'), "ok"); } elseif ($del_id_alias < 1 && $id > -1 && !$can_save) {
/** * Save author * @see Form::execute() * @see Form::execute() */ function execute() { $authorDao = DAORegistry::getDAO('AuthorDAO'); $submission = $this->getSubmission(); $author = $this->getAuthor(); if (!$author) { // this is a new submission contributor $author = new Author(); $author->setSubmissionId($submission->getId()); $existingAuthor = false; } else { $existingAuthor = true; if ($submission->getId() !== $author->getSubmissionId()) { fatalError('Invalid author!'); } } $author->setFirstName($this->getData('firstName')); $author->setMiddleName($this->getData('middleName')); $author->setLastName($this->getData('lastName')); $author->setSuffix($this->getData('suffix')); $author->setAffiliation($this->getData('affiliation'), null); // localized $author->setCountry($this->getData('country')); $author->setEmail($this->getData('email')); $author->setUrl($this->getData('userUrl')); $author->setOrcid($this->getData('orcid')); $author->setUserGroupId($this->getData('userGroupId')); $author->setBiography($this->getData('biography'), null); // localized $author->setPrimaryContact($this->getData('primaryContact') ? true : false); $author->setIncludeInBrowse($this->getData('includeInBrowse') ? true : false); // in order to be able to use the hook parent::execute(); if ($existingAuthor) { $authorDao->updateObject($author); $authorId = $author->getId(); } else { $authorId = $authorDao->insertObject($author); } return $authorId; }
/** * Save changes to article. * @return int the article ID */ function execute() { $articleDao =& DAORegistry::getDAO('ArticleDAO'); if (isset($this->article)) { // Update existing article $this->article->setSectionId($this->getData('sectionId')); $this->article->setLocale($this->getData('locale')); $this->article->setCommentsToEditor($this->getData('commentsToEditor')); if ($this->article->getSubmissionProgress() <= $this->step) { $this->article->stampStatusModified(); $this->article->setSubmissionProgress($this->step + 1); } $articleDao->updateArticle($this->article); } else { // Insert new article $journal =& $this->request->getJournal(); $user =& $this->request->getUser(); $this->article = new Article(); $this->article->setLocale($this->getData('locale')); $this->article->setUserId($user->getId()); $this->article->setJournalId($journal->getId()); $this->article->setSectionId($this->getData('sectionId')); $this->article->stampStatusModified(); $this->article->setSubmissionProgress($this->step + 1); $this->article->setLanguage(String::substr($this->article->getLocale(), 0, 2)); $this->article->setCommentsToEditor($this->getData('commentsToEditor')); $articleDao->insertArticle($this->article); $this->articleId = $this->article->getId(); // Set user to initial author $authorDao =& DAORegistry::getDAO('AuthorDAO'); /* @var $authorDao AuthorDAO */ $user =& $this->request->getUser(); $author = new Author(); $author->setSubmissionId($this->articleId); $author->setFirstName($user->getFirstName()); $author->setMiddleName($user->getMiddleName()); $author->setLastName($user->getLastName()); $author->setAffiliation($user->getAffiliation(null), null); $author->setCountry($user->getCountry()); $author->setEmail($user->getEmail()); $author->setData('orcid', $user->getData('orcid')); $author->setUrl($user->getUrl()); $author->setBiography($user->getBiography(null), null); $author->setPrimaryContact(1); $authorDao->insertAuthor($author); } return $this->articleId; }
/** * Retrieve all authors from published papers * @param $schedConfId int * @return $authors array Author Objects */ function getPublishedPaperAuthors($schedConfId) { $authors = array(); $result =& $this->retrieve('SELECT aa.* FROM paper_authors aa, published_papers pa WHERE aa.paper_id = pa.paper_id AND pa.sched_conf_id = ? ORDER BY pa.sched_conf_id', $schedConfId); while (!$result->EOF) { $row = $result->GetRowAssoc(false); $author = new Author(); $author->setId($row['author_id']); $author->setPaperId($row['paper_id']); $author->setFirstName($row['first_name']); $author->setMiddleName($row['middle_name']); $author->setLastName($row['last_name']); $author->setAffiliation($row['affiliation']); $author->setEmail($row['email']); $author->setBiography($row['biography']); $author->setPrimaryContact($row['primary_contact']); $author->setSequence($row['seq']); $authors[] = $author; $result->moveNext(); } $result->Close(); unset($result); return $authors; }
/** * Retrieve all authors from published papers * @param $schedConfId int * @return $authors array Author Objects */ function getPublishedPaperAuthors($schedConfId) { $primaryLocale = AppLocale::getPrimaryLocale(); $locale = AppLocale::getLocale(); $authors = array(); $result =& $this->retrieve('SELECT aa.*, aspl.setting_value AS affiliation_pl, asl.setting_value AS affiliation_l FROM authors aa LEFT JOIN published_papers pa ON (pa.paper_id = aa.submission_id) LEFT JOIN author_settings aspl ON (aspl.author_id = aa.author_id AND aspl.setting_name = ? AND aspl.locale = ?) LEFT JOIN author_settings asl ON (asl.author_id = aa.author_id AND asl.setting_name = ? AND asl.locale = ?) WHERE pa.sched_conf_id = ?', array('affiliation', $primaryLocale, 'affiliation', $locale, (int) $schedConfId)); while (!$result->EOF) { $row = $result->GetRowAssoc(false); $author = new Author(); $author->setId($row['author_id']); $author->setSubmissionId($row['paper_id']); $author->setFirstName($row['first_name']); $author->setMiddleName($row['middle_name']); $author->setLastName($row['last_name']); $author->setAffiliation($row['affiliation_pl'], $primaryLocale); $author->setAffiliation($row['affiliation_l'], $locale); $author->setEmail($row['email']); $author->setBiography($row['biography']); $author->setPrimaryContact($row['primary_contact']); $author->setSequence($row['seq']); $authors[] = $author; $result->moveNext(); } $result->Close(); unset($result); return $authors; }
/** * Save changes to submission. * @return int the monograph ID */ function execute() { $monographDao =& DAORegistry::getDAO('MonographDAO'); if (isset($this->monograph)) { // Update existing monograph $this->monograph->setSeriesId($this->getData('seriesId')); $this->monograph->setLocale($this->getData('locale')); $this->monograph->setCommentsToEditor($this->getData('commentsToEditor')); if ($this->monograph->getSubmissionProgress() <= $this->step) { $this->monograph->stampStatusModified(); $this->monograph->setSubmissionProgress($this->step + 1); } $monographDao->updateMonograph($this->monograph); } else { $press =& Request::getPress(); $user =& Request::getUser(); // Get the session and the user group id currently used $sessionMgr =& SessionManager::getManager(); $session =& $sessionMgr->getUserSession(); // Create new monograph $this->monograph = new Monograph(); $this->monograph->setLocale($this->getData('locale')); $this->monograph->setUserId($user->getId()); $this->monograph->setPressId($press->getId()); $this->monograph->setSeriesId($this->getData('seriesId')); $this->monograph->stampStatusModified(); $this->monograph->setSubmissionProgress($this->step + 1); $this->monograph->setLanguage(String::substr($this->monograph->getLocale(), 0, 2)); $this->monograph->setCommentsToEditor($this->getData('commentsToEditor')); $this->monograph->setWorkType($this->getData('isEditedVolume') ? WORK_TYPE_EDITED_VOLUME : WORK_TYPE_AUTHORED_WORK); $this->monograph->setCurrentStageId(WORKFLOW_STAGE_ID_SUBMISSION); // Get a default user group id for an Author $userGroupDao =& DAORegistry::getDAO('UserGroupDAO'); $defaultAuthorGroup =& $userGroupDao->getDefaultByRoleId($press->getId(), ROLE_ID_AUTHOR); // Set user to initial author $authorDao =& DAORegistry::getDAO('AuthorDAO'); $user =& Request::getUser(); $author = new Author(); $author->setFirstName($user->getFirstName()); $author->setMiddleName($user->getMiddleName()); $author->setLastName($user->getLastName()); $author->setAffiliation($user->getAffiliation(null), null); $author->setCountry($user->getCountry()); $author->setEmail($user->getEmail()); $author->setUrl($user->getUrl()); $author->setUserGroupId($defaultAuthorGroup->getId()); $author->setBiography($user->getBiography(null), null); $author->setPrimaryContact(1); $monographDao->insertMonograph($this->monograph); $this->monographId = $this->monograph->getId(); $author->setSubmissionId($this->monographId); $authorDao->insertAuthor($author); } return $this->monographId; }
/** * Save changes to article. * @return int the article ID */ function execute() { $articleDao =& DAORegistry::getDAO('ArticleDAO'); $authorDao =& DAORegistry::getDAO('AuthorDAO'); $sectionDao =& DAORegistry::getDAO('SectionDAO'); // Update article $article =& $this->article; $article->setTitle($this->getData('title'), null); // Localized $section =& $sectionDao->getSection($article->getSectionId()); $article->setAbstract($this->getData('abstract'), null); // Localized import('file.PublicFileManager'); $publicFileManager = new PublicFileManager(); if ($publicFileManager->uploadedFileExists('coverPage')) { $journal = Request::getJournal(); $originalFileName = $publicFileManager->getUploadedFileName('coverPage'); $newFileName = 'cover_article_' . $this->getData('articleId') . '_' . $this->getFormLocale() . '.' . $publicFileManager->getExtension($originalFileName); $publicFileManager->uploadJournalFile($journal->getId(), 'coverPage', $newFileName); $article->setOriginalFileName($publicFileManager->truncateFileName($originalFileName, 127), $this->getFormLocale()); $article->setFileName($newFileName, $this->getFormLocale()); // Store the image dimensions. list($width, $height) = getimagesize($publicFileManager->getJournalFilesPath($journal->getId()) . '/' . $newFileName); $article->setWidth($width, $this->getFormLocale()); $article->setHeight($height, $this->getFormLocale()); } $article->setCoverPageAltText($this->getData('coverPageAltText'), null); // Localized $showCoverPage = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('showCoverPage')); foreach (array_keys($this->getData('coverPageAltText')) as $locale) { if (!array_key_exists($locale, $showCoverPage)) { $showCoverPage[$locale] = 0; } } $article->setShowCoverPage($showCoverPage, null); // Localized $hideCoverPageToc = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageToc')); foreach (array_keys($this->getData('coverPageAltText')) as $locale) { if (!array_key_exists($locale, $hideCoverPageToc)) { $hideCoverPageToc[$locale] = 0; } } $article->setHideCoverPageToc($hideCoverPageToc, null); // Localized $hideCoverPageAbstract = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageAbstract')); foreach (array_keys($this->getData('coverPageAltText')) as $locale) { if (!array_key_exists($locale, $hideCoverPageAbstract)) { $hideCoverPageAbstract[$locale] = 0; } } $article->setHideCoverPageAbstract($hideCoverPageAbstract, null); // Localized $article->setDiscipline($this->getData('discipline'), null); // Localized $article->setSubjectClass($this->getData('subjectClass'), null); // Localized $article->setSubject($this->getData('subject'), null); // Localized $article->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $article->setCoverageChron($this->getData('coverageChron'), null); // Localized $article->setCoverageSample($this->getData('coverageSample'), null); // Localized $article->setType($this->getData('type'), null); // Localized $article->setLanguage($this->getData('language')); // Localized $article->setSponsor($this->getData('sponsor'), null); // Localized $article->setCitations($this->getData('citations')); if ($this->isEditor) { $article->setHideAuthor($this->getData('hideAuthor') ? $this->getData('hideAuthor') : 0); } // Update authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $article->getAuthor($authors[$i]['authorId']); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); $author->setAffiliation($authors[$i]['affiliation']); $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setUrl($authors[$i]['url']); if (array_key_exists('competingInterests', $authors[$i])) { $author->setCompetingInterests($authors[$i]['competingInterests'], null); // Localized } $author->setBiography($authors[$i]['biography'], null); // Localized $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); if ($isExistingAuthor == false) { $article->addAuthor($author); } } } // Remove deleted authors $deletedAuthors = explode(':', $this->getData('deletedAuthors')); for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) { $article->removeAuthor($deletedAuthors[$i]); } parent::execute(); // Save the article $articleDao->updateArticle($article); // Update search index import('search.ArticleSearchIndex'); ArticleSearchIndex::indexArticleMetadata($article); return $article->getId(); }
/** * Save changes to article. * @param $request PKPRequest * @return int the article ID */ function execute(&$request) { $articleDao =& DAORegistry::getDAO('ArticleDAO'); $authorDao =& DAORegistry::getDAO('AuthorDAO'); $sectionDao =& DAORegistry::getDAO('SectionDAO'); $citationDao =& DAORegistry::getDAO('CitationDAO'); /* @var $citationDao CitationDAO */ $article =& $this->article; // Retrieve the previous citation list for comparison. $previousRawCitationList = $article->getCitations(); // Update article $article->setTitle($this->getData('title'), null); // Localized $section =& $sectionDao->getSection($article->getSectionId()); $article->setAbstract($this->getData('abstract'), null); // Localized import('classes.file.PublicFileManager'); $publicFileManager = new PublicFileManager(); if ($publicFileManager->uploadedFileExists(COVER_PAGE_IMAGE_NAME)) { $journal = Request::getJournal(); $originalFileName = $publicFileManager->getUploadedFileName(COVER_PAGE_IMAGE_NAME); $type = $publicFileManager->getUploadedFileType(COVER_PAGE_IMAGE_NAME); $newFileName = 'cover_article_' . $this->article->getId() . '_' . $this->getFormLocale() . $publicFileManager->getImageExtension($type); $publicFileManager->uploadJournalFile($journal->getId(), COVER_PAGE_IMAGE_NAME, $newFileName); $article->setOriginalFileName($publicFileManager->truncateFileName($originalFileName, 127), $this->getFormLocale()); $article->setFileName($newFileName, $this->getFormLocale()); // Store the image dimensions. list($width, $height) = getimagesize($publicFileManager->getJournalFilesPath($journal->getId()) . '/' . $newFileName); $article->setWidth($width, $this->getFormLocale()); $article->setHeight($height, $this->getFormLocale()); } $article->setCoverPageAltText($this->getData('coverPageAltText'), null); // Localized $showCoverPage = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('showCoverPage')); foreach (array_keys($this->getData('coverPageAltText')) as $locale) { if (!array_key_exists($locale, $showCoverPage)) { $showCoverPage[$locale] = 0; } } $article->setShowCoverPage($showCoverPage, null); // Localized $hideCoverPageToc = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageToc')); foreach (array_keys($this->getData('coverPageAltText')) as $locale) { if (!array_key_exists($locale, $hideCoverPageToc)) { $hideCoverPageToc[$locale] = 0; } } $article->setHideCoverPageToc($hideCoverPageToc, null); // Localized $hideCoverPageAbstract = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageAbstract')); foreach (array_keys($this->getData('coverPageAltText')) as $locale) { if (!array_key_exists($locale, $hideCoverPageAbstract)) { $hideCoverPageAbstract[$locale] = 0; } } $article->setHideCoverPageAbstract($hideCoverPageAbstract, null); // Localized $article->setDiscipline($this->getData('discipline'), null); // Localized $article->setSubjectClass($this->getData('subjectClass'), null); // Localized $article->setSubject($this->getData('subject'), null); // Localized $article->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $article->setCoverageChron($this->getData('coverageChron'), null); // Localized $article->setCoverageSample($this->getData('coverageSample'), null); // Localized $article->setType($this->getData('type'), null); // Localized $article->setLanguage($this->getData('language')); // Localized $article->setSponsor($this->getData('sponsor'), null); // Localized $article->setCitations($this->getData('citations')); if ($this->isEditor) { $article->setHideAuthor($this->getData('hideAuthor') ? $this->getData('hideAuthor') : 0); } // consider the additional field names from the public identifer plugins import('classes.plugins.PubIdPluginHelper'); $pubIdPluginHelper = new PubIdPluginHelper(); $pubIdPluginHelper->execute($this, $article); // Update authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $authorDao->getAuthor($authors[$i]['authorId'], $article->getId()); $isExistingAuthor = true; } else { // Create a new author if (checkPhpVersion('5.0.0')) { // *5488* PHP4 Requires explicit instantiation-by-reference $author = new Author(); } else { $author =& new Author(); } $isExistingAuthor = false; } if ($author != null) { $author->setSubmissionId($article->getId()); $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); $author->setAffiliation($authors[$i]['affiliation'], null); // Localized $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setData('orcid', $authors[$i]['orcid']); $author->setUrl($authors[$i]['url']); if (array_key_exists('competingInterests', $authors[$i])) { $author->setCompetingInterests($authors[$i]['competingInterests'], null); // Localized } $author->setBiography($authors[$i]['biography'], null); // Localized $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); HookRegistry::call('Submission::Form::MetadataForm::Execute', array(&$author, &$authors[$i])); if ($isExistingAuthor) { $authorDao->updateAuthor($author); } else { $authorDao->insertAuthor($author); } unset($author); } } // Remove deleted authors $deletedAuthors = preg_split('/:/', $this->getData('deletedAuthors'), -1, PREG_SPLIT_NO_EMPTY); for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) { $authorDao->deleteAuthorById($deletedAuthors[$i], $article->getId()); } if ($this->isEditor) { $article->setCopyrightHolder($this->getData('copyrightHolder'), null); $article->setCopyrightYear($this->getData('copyrightYear')); $article->setLicenseURL($this->getData('licenseURL')); } parent::execute(); // Save the article $articleDao->updateArticle($article); // Update search index import('classes.search.ArticleSearchIndex'); $articleSearchIndex = new ArticleSearchIndex(); $articleSearchIndex->articleMetadataChanged($article); $articleSearchIndex->articleChangesFinished(); // Update references list if it changed. $rawCitationList = $article->getCitations(); if ($previousRawCitationList != $rawCitationList) { $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList); } return $article->getId(); }
/** * Save changes to article. * @return int the article ID */ function execute() { $articleDao =& DAORegistry::getDAO('ArticleDAO'); $authorDao =& DAORegistry::getDAO('AuthorDAO'); // Update article $article =& $this->article; $article->setTitle($this->getData('title'), null); // Localized $article->setAbstract($this->getData('abstract'), null); // Localized $article->setDiscipline($this->getData('discipline'), null); // Localized $article->setSubjectClass($this->getData('subjectClass'), null); // Localized $article->setSubject($this->getData('subject'), null); // Localized $article->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $article->setCoverageChron($this->getData('coverageChron'), null); // Localized $article->setCoverageSample($this->getData('coverageSample'), null); // Localized $article->setType($this->getData('type'), null); // Localized $article->setLanguage($this->getData('language')); $article->setSponsor($this->getData('sponsor'), null); // Localized $article->setCitations($this->getData('citations')); if ($article->getSubmissionProgress() <= $this->step) { $article->stampStatusModified(); $article->setSubmissionProgress($this->step + 1); } // Update authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $article->getAuthor($authors[$i]['authorId']); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setArticleId($article->getId()); $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); $author->setAffiliation($authors[$i]['affiliation']); $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setUrl($authors[$i]['url']); if (array_key_exists('competingInterests', $authors[$i])) { $author->setCompetingInterests($authors[$i]['competingInterests'], null); } $author->setBiography($authors[$i]['biography'], null); $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); if ($isExistingAuthor == false) { $article->addAuthor($author); } } unset($author); } // Remove deleted authors $deletedAuthors = explode(':', $this->getData('deletedAuthors')); for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) { $article->removeAuthor($deletedAuthors[$i]); } parent::execute(); // Save the article $articleDao->updateArticle($article); return $this->articleId; }
/** * Retrieve all authors from published articles * @param $issueId int * @return $authors array Author Objects */ function getPublishedArticleAuthors($issueId) { $primaryLocale = Locale::getPrimaryLocale(); $locale = Locale::getLocale(); $authors = array(); $result =& $this->retrieve('SELECT aa.* FROM authors aa LEFT JOIN published_articles pa ON (pa.article_id = aa.submission_id) WHERE pa.issue_id = ? ORDER BY pa.issue_id', (int) $issueId); while (!$result->EOF) { $row = $result->GetRowAssoc(false); $author = new Author(); $author->setId($row['author_id']); $author->setSubmissionId($row['article_id']); $author->setFirstName($row['first_name']); $author->setMiddleName($row['middle_name']); $author->setLastName($row['last_name']); $author->setAffiliation($row['affiliation_pl'], $primaryLocale); $author->setAffiliation($row['affiliation_l'], $locale); $author->setEmail($row['email']); $author->setBiography($row['biography']); $author->setPrimaryContact($row['primary_contact']); $author->setSequence($row['seq']); $authors[] = $author; $result->moveNext(); } $result->Close(); unset($result); return $authors; }
/** * Save settings. */ function execute($editArticleId) { $this->editArticleID = $editArticleId; $articleDao =& DAORegistry::getDAO('ArticleDAO'); $signoffDao =& DAORegistry::getDAO('SignoffDAO'); $sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO'); $application =& PKPApplication::getApplication(); $request =& $application->getRequest(); $user =& $request->getUser(); $router =& $request->getRouter(); $journal =& $router->getContext($request); $article = new Article(); $article->setLocale($journal->getPrimaryLocale()); // FIXME in bug #5543 $article->setUserId($user->getId()); $article->setJournalId($journal->getId()); $article->setSectionId($this->getData('sectionId')); $article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2)); $article->setTitle($this->getData('title'), null); // Localized //add Original Journal to Abstract $orig_journal = $this->getData('originalJournal'); $abstr = $this->getData('abstract'); foreach (array_keys($abstr) as $abs_key) { $abstr[$abs_key] .= ' <p id="originalPub"> ' . $orig_journal . ' </p> '; // $abstr[$abs_key] .= ' <p id="originalPub"> ' . $orig_journal[$abs_key]. ' </p> '; //OriginalJournal in EditPlugin only a string and not an array... $this->setData('abstract', $abstr); } $article->setAbstract($this->getData('abstract'), null); // Localized $article->setDiscipline($this->getData('discipline'), null); // Localized $article->setSubjectClass($this->getData('subjectClass'), null); // Localized $article->setSubject($this->getData('subject'), null); // Localized $article->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $article->setCoverageChron($this->getData('coverageChron'), null); // Localized $article->setCoverageSample($this->getData('coverageSample'), null); // Localized $article->setType($this->getData('type'), null); // Localized $article->setSponsor($this->getData('sponsor'), null); // Localized $article->setCitations($this->getData('citations')); $article->setPages($this->getData('pages')); // Set some default values so the ArticleDAO doesn't complain when adding this article $article->setDateSubmitted(Core::getCurrentDate()); $article->setStatus(STATUS_PUBLISHED); $article->setSubmissionProgress(0); $article->stampStatusModified(); $article->setCurrentRound(1); $article->setFastTracked(1); $article->setHideAuthor(0); $article->setCommentsStatus(0); // As article has an ID already set it $article->setId($this->editArticleID); $articleId = $this->editArticleID; //delete prior Authors to prevent from double saving the same authors $authorDao =& DAORegistry::getDAO('AuthorDAO'); $authorDao->deleteAuthorsByArticle($articleId); // Add authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $article->getAuthor($authors[$i]['authorId']); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setSubmissionId($articleId); $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); if (array_key_exists('affiliation', $authors[$i])) { $author->setAffiliation($authors[$i]['affiliation'], null); } $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setUrl($authors[$i]['url']); if (array_key_exists('competingInterests', $authors[$i])) { $author->setCompetingInterests($authors[$i]['competingInterests'], null); } $author->setBiography($authors[$i]['biography'], null); $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); if ($isExistingAuthor == false) { $article->addAuthor($author); } } } // Check whether the user gave a handle and create a handleSubmissionFile in case $submissionHandle = $this->getData('submissionHandle'); $handleSubmissionFileId; $handleCheck = FALSE; //import FileManager before creating files because otherwise naming of the copied files failes import('classes.file.ArticleFileManager'); foreach (array_keys($submissionHandle) as $locale) { if (!empty($submissionHandle[$locale])) { $this->deleteOldFile("submission/original", $articleId); // $this->deleteOldFile("submission/copyedit", $articleId); $handleCheck = TRUE; $handleSubmissionId = $this->createHandleTXTFile($submissionHandle[$locale], $articleId, 'submission'); $handleSubmissionPDFId = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'submission'); //Add the handle submission files as galley $this->setGalley($articleId, $handleSubmissionPDFId, $locale, 'application/pdf'); } if ($handleCheck == TRUE) { if ($locale == $journal->getPrimaryLocale()) { $article->setSubmissionFileId($handleSubmissionPDFId); $article->SetReviewFileId($handleSubmissionPDFId); } // Update file search index import('classes.search.ArticleSearchIndex'); if (isset($galley)) { ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId()); } } } // Add the submission files as galleys import('classes.file.TemporaryFileManager'); import('classes.file.ArticleFileManager'); $tempFileIds = $this->getData('tempFileId'); $temporaryFileManager = new TemporaryFileManager(); $articleFileManager = new ArticleFileManager($articleId); $tempFileCheck = FALSE; foreach (array_keys($tempFileIds) as $locale) { $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId()); $fileId = null; if ($temporaryFile) { $this->deleteOldFile("submission/original", $articleId); $this->deleteOldFile("submission/copyedit", $articleId); $tempFileCheck = TRUE; $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION); $fileType = $temporaryFile->getFileType(); $this->setGalley($articleId, $fileId, $locale, $fileType); // $galley =& $this->setGalley($articleId, $fileId, $locale, $fileType); } if ($tempFileCheck == TRUE) { if ($locale == $journal->getPrimaryLocale()) { $article->setSubmissionFileId($fileId); $article->SetReviewFileId($fileId); } // Update file search index import('classes.search.ArticleSearchIndex'); if (isset($galley)) { ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId()); } } } //Check whether the user gave a handle and create handleSupplFile in case $supplHandle = $this->getData('supplHandle'); $handleSuppFileId = null; foreach (array_keys($supplHandle) as $locale) { if (!empty($supplHandle[$locale])) { $this->deleteOldFile("supp", $articleId); $handleSuppFileId = $this->createHandleTXTFile($supplHandle[$locale], $articleId, 'supplementary'); $handleSupplPDFFileID = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'supplementary'); } } //Add uploaded Supplementary file $tempSupplFileIds = $this->getData('tempSupplFileId'); foreach (array_keys($tempSupplFileIds) as $locale) { $temporaryFile = $temporaryFileManager->getFile($tempSupplFileIds[$locale], $user->getId()); $fileId = null; if ($temporaryFile) { $this->deleteOldFile("supp", $articleId); $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUPP); $fileType = $temporaryFile->getFileType(); } } // Designate this as the review version by default. /*$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO'); $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId); import('classes.submission.author.AuthorAction'); AuthorAction::designateReviewVersion($authorSubmission, true); */ // Accept the submission /*$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId); $articleFileManager = new ArticleFileManager($articleId); $sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId())); import('classes.submission.sectionEditor.SectionEditorAction'); SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT); */ // Create signoff infrastructure $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId); $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId); $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId); $copyeditInitialSignoff->setUserId(0); $copyeditAuthorSignoff->setUserId($user->getId()); $copyeditFinalSignoff->setUserId(0); $signoffDao->updateObject($copyeditInitialSignoff); $signoffDao->updateObject($copyeditAuthorSignoff); $signoffDao->updateObject($copyeditFinalSignoff); $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId); $layoutSignoff->setUserId(0); $signoffDao->updateObject($layoutSignoff); $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId); $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId); $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId); $proofAuthorSignoff->setUserId($user->getId()); $proofProofreaderSignoff->setUserId(0); $proofLayoutEditorSignoff->setUserId(0); $signoffDao->updateObject($proofAuthorSignoff); $signoffDao->updateObject($proofProofreaderSignoff); $signoffDao->updateObject($proofLayoutEditorSignoff); import('classes.author.form.submit.AuthorSubmitForm'); AuthorSubmitForm::assignEditors($article); $articleDao->updateArticle($article); // Add to end of editing queue import('classes.submission.editor.EditorAction'); if (isset($galley)) { EditorAction::expediteSubmission($article); } // As the article already has an issue, just get it from database $issueDao =& DAORegistry::getDAO('IssueDAO'); $issue =& $issueDao->getIssueByArticleId($this->editArticleID); $issueId = $issue->getIssueId(); //$this->scheduleForPublication($articleId, $issueId); // Index article. import('classes.search.ArticleSearchIndex'); ArticleSearchIndex::indexArticleMetadata($article); // Import the references list. $citationDao =& DAORegistry::getDAO('CitationDAO'); $rawCitationList = $article->getCitations(); $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList); }
/** * Save submissionContributor * @see Form::execute() * @see Form::execute() */ function execute() { $authorDao =& DAORegistry::getDAO('AuthorDAO'); $monograph = $this->getMonograph(); $submissionContributor =& $this->getSubmissionContributor(); if (!$submissionContributor) { // this is a new submission contributor $submissionContributor = new Author(); $submissionContributor->setMonographId($monograph->getId()); $existingSubmissionContributor = false; } else { $existingSubmissionContributor = true; } assert($monograph->getId() == $submissionContributor->getMonographId()); $submissionContributor->setFirstName($this->getData('firstName')); $submissionContributor->setMiddleName($this->getData('middleName')); $submissionContributor->setLastName($this->getData('lastName')); $submissionContributor->setAffiliation($this->getData('affiliation'), Locale::getLocale()); // localized $submissionContributor->setCountry($this->getData('country')); $submissionContributor->setEmail($this->getData('email')); $submissionContributor->setUrl($this->getData('url')); $submissionContributor->setUserGroupId($this->getData('userGroupId')); $submissionContributor->setBiography($this->getData('biography'), Locale::getLocale()); // localized $submissionContributor->setPrimaryContact($this->getData('primaryContact') ? true : false); if ($existingSubmissionContributor) { $authorDao->updateAuthor($submissionContributor); $authorId = $submissionContributor->getId(); } else { $authorId = $authorDao->insertAuthor($submissionContributor); } return $authorId; }
/** * Save changes to article. * @return int the article ID */ function execute() { $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO'); if (isset($this->article)) { // Update existing article $this->article->setLocale($this->getData('locale')); $this->article->setCommentsToEditor($this->getData('commentsToEditor')); if ($this->article->getSubmissionProgress() <= $this->step) { $this->article->stampStatusModified(); $this->article->setSubmissionProgress($this->step + 1); } $lastSectionDecision = $this->article->getLastSectionDecision(); $lastSectionDecision->setSectionId($this->getData('sectionId')); $authorSubmissionDao->updateAuthorSubmission($this->article); } else { // Insert new article $journal =& Request::getJournal(); $user =& Request::getUser(); $this->article = new AuthorSubmission(); $this->article->setLocale($this->getData('locale')); $this->article->setUserId($user->getId()); $this->article->setJournalId($journal->getId()); $this->article->stampStatusModified(); $this->article->setSubmissionProgress($this->step + 1); $this->article->setLanguage(String::substr($this->article->getLocale(), 0, 2)); $this->article->setCommentsToEditor($this->getData('commentsToEditor')); // Set new Section Decision $sectionDecision =& new SectionDecision(); $sectionDecision->setReviewType(REVIEW_TYPE_INITIAL); $sectionDecision->setRound(1); $sectionDecision->setSectionId($this->getData('sectionId')); $sectionDecision->setDecision(0); $sectionDecision->setDateDecided(date(Core::getCurrentDate())); $this->article->addDecision($sectionDecision); // Set user to initial author $author = new Author(); $author->setFirstName($user->getFirstName()); $author->setMiddleName($user->getMiddleName()); $author->setLastName($user->getLastName()); $author->setAffiliation($user->getLocalizedAffiliation()); $author->setEmail($user->getEmail()); $author->setPhoneNumber($user->getPhone()); $author->setBiography($user->getBiography(null), null); $author->setPrimaryContact(1); $this->article->addAuthor($author); $authorSubmissionDao->insertAuthorSubmission($this->article); $this->articleId = $this->article->getId(); } return $this->articleId; }
/** * Save changes to article. * @param $request Request * @return int the article ID */ function execute() { $articleDao =& DAORegistry::getDAO('ArticleDAO'); $authorDao =& DAORegistry::getDAO('AuthorDAO'); $article =& $this->article; // Retrieve the previous citation list for comparison. $previousRawCitationList = $article->getCitations(); // Update article $article->setTitle($this->getData('title'), null); // Localized $article->setAbstract($this->getData('abstract'), null); // Localized $article->setDiscipline($this->getData('discipline'), null); // Localized $article->setSubjectClass($this->getData('subjectClass'), null); // Localized $article->setSubject($this->getData('subject'), null); // Localized $article->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $article->setCoverageChron($this->getData('coverageChron'), null); // Localized $article->setCoverageSample($this->getData('coverageSample'), null); // Localized $article->setType($this->getData('type'), null); // Localized $article->setLanguage($this->getData('language')); $article->setSponsor($this->getData('sponsor'), null); // Localized $article->setCitations($this->getData('citations')); if ($article->getSubmissionProgress() <= $this->step) { $article->stampStatusModified(); $article->setSubmissionProgress($this->step + 1); } // Update authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $authorDao->getAuthor($authors[$i]['authorId'], $article->getId()); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setSubmissionId($article->getId()); $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); $author->setAffiliation($authors[$i]['affiliation'], null); $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setData('orcid', $authors[$i]['orcid']); $author->setUrl($authors[$i]['url']); if (array_key_exists('competingInterests', $authors[$i])) { $author->setCompetingInterests($authors[$i]['competingInterests'], null); } $author->setBiography($authors[$i]['biography'], null); $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); HookRegistry::call('Author::Form::Submit::AuthorSubmitStep3Form::Execute', array(&$author, &$authors[$i])); if ($isExistingAuthor) { $authorDao->updateAuthor($author); } else { $authorDao->insertAuthor($author); } } unset($author); } // Remove deleted authors $deletedAuthors = preg_split('/:/', $this->getData('deletedAuthors'), -1, PREG_SPLIT_NO_EMPTY); for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) { $authorDao->deleteAuthorById($deletedAuthors[$i], $article->getId()); } parent::execute(); // Save the article $articleDao->updateArticle($article); // Update references list if it changed. $citationDao =& DAORegistry::getDAO('CitationDAO'); $rawCitationList = $article->getCitations(); if ($previousRawCitationList != $rawCitationList) { $citationDao->importCitations($this->request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList); } return $this->articleId; }
/** * Save settings. */ function execute() { $articleDao =& DAORegistry::getDAO('ArticleDAO'); $signoffDao =& DAORegistry::getDAO('SignoffDAO'); $sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO'); $application =& PKPApplication::getApplication(); $request =& $application->getRequest(); $user =& $request->getUser(); $router =& $request->getRouter(); $journal =& $router->getContext($request); $article = new Article(); $article->setLocale($journal->getPrimaryLocale()); // FIXME in bug #5543 $article->setUserId($user->getId()); $article->setJournalId($journal->getId()); $article->setSectionId($this->getData('sectionId')); $article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2)); $article->setTitle($this->getData('title'), null); // Localized $article->setAbstract($this->getData('abstract'), null); // Localized $article->setDiscipline($this->getData('discipline'), null); // Localized $article->setSubjectClass($this->getData('subjectClass'), null); // Localized $article->setSubject($this->getData('subject'), null); // Localized $article->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $article->setCoverageChron($this->getData('coverageChron'), null); // Localized $article->setCoverageSample($this->getData('coverageSample'), null); // Localized $article->setType($this->getData('type'), null); // Localized $article->setSponsor($this->getData('sponsor'), null); // Localized $article->setCitations($this->getData('citations')); $article->setPages($this->getData('pages')); // Set some default values so the ArticleDAO doesn't complain when adding this article $article->setDateSubmitted(Core::getCurrentDate()); $article->setStatus(STATUS_PUBLISHED); $article->setSubmissionProgress(0); $article->stampStatusModified(); $article->setCurrentRound(1); $article->setFastTracked(1); $article->setHideAuthor(0); $article->setCommentsStatus(0); // Insert the article to get it's ID $articleDao->insertArticle($article); $articleId = $article->getId(); // Add authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $article->getAuthor($authors[$i]['authorId']); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setSubmissionId($articleId); $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); if (array_key_exists('affiliation', $authors[$i])) { $author->setAffiliation($authors[$i]['affiliation'], null); } $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setUrl($authors[$i]['url']); if (array_key_exists('competingInterests', $authors[$i])) { $author->setCompetingInterests($authors[$i]['competingInterests'], null); } $author->setBiography($authors[$i]['biography'], null); $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); if ($isExistingAuthor == false) { $article->addAuthor($author); } } } // Add the submission files as galleys import('classes.file.TemporaryFileManager'); import('classes.file.ArticleFileManager'); $tempFileIds = $this->getData('tempFileId'); $temporaryFileManager = new TemporaryFileManager(); $articleFileManager = new ArticleFileManager($articleId); foreach (array_keys($tempFileIds) as $locale) { $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId()); $fileId = null; if ($temporaryFile) { $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION); $fileType = $temporaryFile->getFileType(); if (strstr($fileType, 'html')) { import('classes.article.ArticleHTMLGalley'); $galley = new ArticleHTMLGalley(); } else { import('classes.article.ArticleGalley'); $galley = new ArticleGalley(); } $galley->setArticleId($articleId); $galley->setFileId($fileId); $galley->setLocale($locale); if ($galley->isHTMLGalley()) { $galley->setLabel('HTML'); } else { if (strstr($fileType, 'pdf')) { $galley->setLabel('PDF'); } else { if (strstr($fileType, 'postscript')) { $galley->setLabel('Postscript'); } else { if (strstr($fileType, 'xml')) { $galley->setLabel('XML'); } else { $galley->setLabel(__('common.untitled')); } } } } $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO'); $galleyDao->insertGalley($galley); } if ($locale == $journal->getPrimaryLocale()) { $article->setSubmissionFileId($fileId); $article->SetReviewFileId($fileId); } // Update file search index import('classes.search.ArticleSearchIndex'); if (isset($galley)) { ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId()); } } // Designate this as the review version by default. $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO'); $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId); import('classes.submission.author.AuthorAction'); AuthorAction::designateReviewVersion($authorSubmission, true); // Accept the submission $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId); $articleFileManager = new ArticleFileManager($articleId); $sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId())); import('classes.submission.sectionEditor.SectionEditorAction'); SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT); // Create signoff infrastructure $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId); $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId); $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId); $copyeditInitialSignoff->setUserId(0); $copyeditAuthorSignoff->setUserId($user->getId()); $copyeditFinalSignoff->setUserId(0); $signoffDao->updateObject($copyeditInitialSignoff); $signoffDao->updateObject($copyeditAuthorSignoff); $signoffDao->updateObject($copyeditFinalSignoff); $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId); $layoutSignoff->setUserId(0); $signoffDao->updateObject($layoutSignoff); $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId); $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId); $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId); $proofAuthorSignoff->setUserId($user->getId()); $proofProofreaderSignoff->setUserId(0); $proofLayoutEditorSignoff->setUserId(0); $signoffDao->updateObject($proofAuthorSignoff); $signoffDao->updateObject($proofProofreaderSignoff); $signoffDao->updateObject($proofLayoutEditorSignoff); import('classes.author.form.submit.AuthorSubmitForm'); AuthorSubmitForm::assignEditors($article); $articleDao->updateArticle($article); // Add to end of editing queue import('classes.submission.editor.EditorAction'); if (isset($galley)) { EditorAction::expediteSubmission($article); } if ($this->getData('destination') == "issue") { // Add to an existing issue $issueId = $this->getData('issueId'); $this->scheduleForPublication($articleId, $issueId); } // Index article. import('classes.search.ArticleSearchIndex'); ArticleSearchIndex::indexArticleMetadata($article); // Import the references list. $citationDao =& DAORegistry::getDAO('CitationDAO'); $rawCitationList = $article->getCitations(); $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList); }
function handleAuthorNode(&$conference, &$schedConf, &$authorNode, &$track, &$paper, &$errors) { $errors = array(); $conferenceSupportedLocales = array_keys($conference->getSupportedLocaleNames()); // => conference locales must be set up before $conferencePrimaryLocale = $conference->getPrimaryLocale(); $author = new Author(); if ($node = $authorNode->getChildByName('firstname')) { $author->setFirstName($node->getValue()); } if ($node = $authorNode->getChildByName('middlename')) { $author->setMiddleName($node->getValue()); } if ($node = $authorNode->getChildByName('lastname')) { $author->setLastName($node->getValue()); } if ($node = $authorNode->getChildByName('affiliation')) { $author->setAffiliation($node->getValue()); } if ($node = $authorNode->getChildByName('country')) { $author->setCountry($node->getValue()); } if ($node = $authorNode->getChildByName('email')) { $author->setEmail($node->getValue()); } if ($node = $authorNode->getChildByName('url')) { $author->setUrl($node->getValue()); } for ($index = 0; $node = $authorNode->getChildByName('biography', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $conferencePrimaryLocale; } elseif (!in_array($locale, $conferenceSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.paperAuthorBiographyLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'paperTitle' => $paper->getLocalizedTitle(), 'locale' => $locale)); return false; } $author->setBiography($node->getValue(), $locale); } $author->setPrimaryContact($authorNode->getAttribute('primary_contact') === 'true' ? 1 : 0); $paper->addAuthor($author); // instead of $author->setSequence($index+1); return true; }
/** * Save changes to paper. * @return int the paper ID */ function execute() { $paperDao = DAORegistry::getDAO('PaperDAO'); if (isset($this->paper)) { $reviewMode = $this->paper->getReviewMode(); // Update existing paper $this->paper->setTrackId($this->getData('trackId')); $this->paper->setLocale($this->getData('locale')); $this->paper->setCommentsToDirector($this->getData('commentsToDirector')); $this->paper->setData('sessionType', $this->getData('sessionType')); if ($this->paper->getSubmissionProgress() <= $this->step) { $this->paper->stampStatusModified(); if ($reviewMode == REVIEW_MODE_ABSTRACTS_ALONE) { $this->paper->setSubmissionProgress($this->step + 2); } else { $this->paper->setSubmissionProgress($this->step + 1); } } $paperDao->updatePaper($this->paper); } else { // Insert new paper $conference =& Request::getConference(); $schedConf =& Request::getSchedConf(); $user =& Request::getUser(); $this->paper = new Paper(); $this->paper->setLocale($this->getData('locale')); $this->paper->setUserId($user->getId()); $this->paper->setSchedConfId($schedConf->getId()); $this->paper->setTrackId($this->getData('trackId')); $this->paper->stampStatusModified(); $reviewMode = $schedConf->getSetting('reviewMode'); $this->paper->setReviewMode($reviewMode); $this->paper->setLanguage(String::substr($this->paper->getLocale(), 0, 2)); $this->paper->setCommentsToDirector($this->getData('commentsToDirector')); switch ($reviewMode) { case REVIEW_MODE_ABSTRACTS_ALONE: case REVIEW_MODE_BOTH_SEQUENTIAL: $this->paper->setSubmissionProgress($this->step + 2); $this->paper->setCurrentRound(REVIEW_ROUND_ABSTRACT); break; case REVIEW_MODE_PRESENTATIONS_ALONE: case REVIEW_MODE_BOTH_SIMULTANEOUS: $this->paper->setSubmissionProgress($this->step + 1); $this->paper->setCurrentRound(REVIEW_ROUND_PRESENTATION); break; } $this->paper->setData('sessionType', $this->getData('sessionType')); $paperDao->insertPaper($this->paper); $this->paperId = $this->paper->getPaperId(); // Set user to initial author $authorDao = DAORegistry::getDAO('AuthorDAO'); /* @var $authorDao AuthorDAO */ $user =& Request::getUser(); $author = new Author(); $author->setSubmissionId($this->paperId); $author->setFirstName($user->getFirstName()); $author->setMiddleName($user->getMiddleName()); $author->setLastName($user->getLastName()); $author->setAffiliation($user->getAffiliation(null), null); $author->setCountry($user->getCountry()); $author->setEmail($user->getEmail()); $author->setUrl($user->getUrl()); $author->setBiography($user->getBiography(null), null); $author->setPrimaryContact(1); $authorDao->insertObject($author); } return $this->paperId; }
function handleAuthorNode(&$journal, &$authorNode, &$issue, &$section, &$article, &$errors) { $errors = array(); $journalSupportedLocales = array_keys($journal->getSupportedLocaleNames()); // => journal locales must be set up before $journalPrimaryLocale = $journal->getPrimaryLocale(); $author = new Author(); if ($node = $authorNode->getChildByName('firstname')) { $author->setFirstName($node->getValue()); } if ($node = $authorNode->getChildByName('middlename')) { $author->setMiddleName($node->getValue()); } if ($node = $authorNode->getChildByName('lastname')) { $author->setLastName($node->getValue()); } for ($index = 0; $node = $authorNode->getChildByName('affiliation', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleAuthorAffiliationLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $author->setAffiliation($node->getValue(), $locale); } if ($node = $authorNode->getChildByName('country')) { $author->setCountry($node->getValue()); } if ($node = $authorNode->getChildByName('email')) { $author->setEmail($node->getValue()); } if ($node = $authorNode->getChildByName('url')) { $author->setUrl($node->getValue()); } for ($index = 0; $node = $authorNode->getChildByName('competing_interests', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleAuthorCompetingInterestsLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $author->setCompetingInterests($node->getValue(), $locale); } for ($index = 0; $node = $authorNode->getChildByName('biography', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleAuthorBiographyLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $author->setBiography($node->getValue(), $locale); } $author->setPrimaryContact($authorNode->getAttribute('primary_contact') === 'true' ? 1 : 0); $article->addAuthor($author); // instead of $author->setSequence($index+1); return true; }
/** * Save changes to paper. * @return int the paper ID */ function execute() { $paperDao =& DAORegistry::getDAO('PaperDAO'); $authorDao =& DAORegistry::getDAO('AuthorDAO'); $paper =& $this->paper; $conference =& Request::getConference(); $schedConf =& Request::getSchedConf(); $user =& Request::getUser(); // Update paper $paper->setTitle($this->getData('title'), null); // Localized $reviewMode = $this->paper->getReviewMode(); if ($reviewMode != REVIEW_MODE_PRESENTATIONS_ALONE) { $paper->setAbstract($this->getData('abstract'), null); // Localized } $paper->setDiscipline($this->getData('discipline'), null); // Localized $paper->setSubjectClass($this->getData('subjectClass'), null); // Localized $paper->setSubject($this->getData('subject'), null); // Localized $paper->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $paper->setCoverageChron($this->getData('coverageChron'), null); // Localized $paper->setCoverageSample($this->getData('coverageSample'), null); // Localized $paper->setType($this->getData('type'), null); // Localized $paper->setLanguage($this->getData('language')); // Localized $paper->setSponsor($this->getData('sponsor'), null); // Localized $paper->setCitations($this->getData('citations')); // Update the submission progress if necessary. if ($paper->getSubmissionProgress() <= $this->step) { $paper->stampStatusModified(); // If we aren't about to collect the paper, the submission is complete // (for now) $reviewMode = $this->paper->getReviewMode(); if ($reviewMode == REVIEW_MODE_BOTH_SIMULTANEOUS || $reviewMode == REVIEW_MODE_PRESENTATIONS_ALONE) { if (!$schedConf->getSetting('acceptSupplementaryReviewMaterials')) { $paper->setSubmissionProgress($this->step + 2); } else { $paper->setSubmissionProgress($this->step + 1); } // The line below is necessary to ensure that // the paper upload goes in with the correct // stage number (i.e. paper). $paper->setCurrentStage(REVIEW_STAGE_PRESENTATION); } else { $paper->setDateSubmitted(Core::getCurrentDate()); $paper->stampStatusModified(); $paper->setCurrentStage(REVIEW_STAGE_ABSTRACT); $this->assignDirectors($paper); if ($schedConf->getSetting('acceptSupplementaryReviewMaterials')) { $paper->setSubmissionProgress($this->step + 2); } else { $paper->setSubmissionProgress(0); $this->confirmSubmission($paper, $user, $schedConf, $conference, 'SUBMISSION_ACK'); } } } // Update authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $paper->getAuthor($authors[$i]['authorId']); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); $author->setAffiliation($authors[$i]['affiliation']); $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setUrl($authors[$i]['url']); $author->setBiography($authors[$i]['biography'], null); // Localized $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); if ($isExistingAuthor == false) { $paper->addAuthor($author); } } unset($author); } // Remove deleted authors $deletedAuthors = explode(':', $this->getData('deletedAuthors')); for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) { $paper->removeAuthor($deletedAuthors[$i]); } // Save the paper $paperDao->updatePaper($paper); // Log the submission, even though it may not be "complete" // at this step. This is important because we don't otherwise // capture changes in review process. import('paper.log.PaperLog'); import('paper.log.PaperEventLogEntry'); PaperLog::logEvent($this->paperId, PAPER_LOG_ABSTRACT_SUBMIT, LOG_TYPE_AUTHOR, $user->getId(), 'log.author.abstractSubmitted', array('submissionId' => $paper->getId(), 'authorName' => $user->getFullName())); return $this->paperId; }
/** * Save settings. */ function execute() { $articleDao = DAORegistry::getDAO('ArticleDAO'); $signoffDao = DAORegistry::getDAO('SignoffDAO'); $sectionEditorSubmissionDao = DAORegistry::getDAO('SectionEditorSubmissionDAO'); $application = PKPApplication::getApplication(); $request = $this->request; $user = $request->getUser(); $router = $request->getRouter(); $journal = $router->getContext($request); $article = $articleDao->newDataObject(); $article->setLocale($journal->getPrimaryLocale()); // FIXME in bug #5543 $article->setUserId($user->getId()); $article->setJournalId($journal->getId()); $article->setSectionId($this->getData('sectionId')); $article->setLanguage($this->getData('language')); $article->setTitle($this->getData('title'), null); // Localized $article->setAbstract($this->getData('abstract'), null); // Localized $article->setDiscipline($this->getData('discipline'), null); // Localized $article->setSubjectClass($this->getData('subjectClass'), null); // Localized $article->setSubject($this->getData('subject'), null); // Localized $article->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $article->setCoverageChron($this->getData('coverageChron'), null); // Localized $article->setCoverageSample($this->getData('coverageSample'), null); // Localized $article->setType($this->getData('type'), null); // Localized $article->setSponsor($this->getData('sponsor'), null); // Localized $article->setCitations($this->getData('citations')); $article->setPages($this->getData('pages')); // Set some default values so the ArticleDAO doesn't complain when adding this article $article->setDateSubmitted(Core::getCurrentDate()); $article->setStatus(STATUS_PUBLISHED); $article->setSubmissionProgress(0); $article->stampStatusModified(); $article->setCurrentRound(1); $article->setFastTracked(1); $article->setHideAuthor(0); $article->setCommentsStatus(0); // Insert the article to get it's ID $articleDao->insertObject($article); $articleId = $article->getId(); // Add authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $authorDao->getAuthor($authors[$i]['authorId'], $articleId); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setSubmissionId($articleId); $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); if (array_key_exists('affiliation', $authors[$i])) { $author->setAffiliation($authors[$i]['affiliation'], null); } $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setUrl($authors[$i]['url']); if (array_key_exists('competingInterests', $authors[$i])) { $author->setCompetingInterests($authors[$i]['competingInterests'], null); } $author->setBiography($authors[$i]['biography'], null); $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); if ($isExistingAuthor == false) { $authorDao = DAORegistry::getDAO('AuthorDAO'); /* @var $authorDao AuthorDAO */ $authorDao->insertObject($author); } } } // Add the submission files as galleys import('lib.pkp.classes.file.TemporaryFileManager'); import('classes.file.ArticleFileManager'); $tempFileIds = $this->getData('tempFileId'); $temporaryFileManager = new TemporaryFileManager(); $articleFileManager = new ArticleFileManager($articleId); $designatedPrimary = false; foreach (array_keys($tempFileIds) as $locale) { $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId()); $fileId = null; if ($temporaryFile) { $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, SUBMISSION_FILE_SUBMISSION); $fileType = $temporaryFile->getFileType(); if (strstr($fileType, 'html')) { import('classes.article.ArticleHTMLGalley'); $galley = new ArticleHTMLGalley(); } else { import('classes.article.ArticleGalley'); $galley = new ArticleGalley(); } $galley->setArticleId($articleId); $galley->setFileId($fileId); $galley->setLocale($locale); if ($galley->isHTMLGalley()) { $galley->setLabel('HTML'); } else { if (strstr($fileType, 'pdf')) { $galley->setLabel('PDF'); } else { if (strstr($fileType, 'postscript')) { $galley->setLabel('Postscript'); } else { if (strstr($fileType, 'xml')) { $galley->setLabel('XML'); } else { $galley->setLabel(__('common.untitled')); } } } } $galleyDao = DAORegistry::getDAO('ArticleGalleyDAO'); $galleyDao->insertGalley($galley); if (!$designatedPrimary) { $article->setSubmissionFileId($fileId); if ($locale == $journal->getPrimaryLocale()) { // Used to make sure that *some* file // is designated Review Version, but // preferrably the primary locale. $designatedPrimary = true; } } } // Update file search index import('classes.search.ArticleSearchIndex'); $articleSearchIndex = new ArticleSearchIndex(); if (isset($galley)) { $articleSearchIndex->articleFileChanged($galley->getArticleId(), SUBMISSION_SEARCH_GALLEY_FILE, $galley->getFileId()); } $articleSearchIndex->articleChangesFinished(); } // Designate this as the review version by default. $authorSubmissionDao = DAORegistry::getDAO('AuthorSubmissionDAO'); $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId); import('classes.submission.author.AuthorAction'); AuthorAction::designateReviewVersion($authorSubmission, true); // Accept the submission $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId); $articleFileManager = new ArticleFileManager($articleId); import('classes.submission.sectionEditor.SectionEditorAction'); assert(false); // FIXME: $decisionLabels missing from call below. SectionEditorAction::recordDecision($this->request, $sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT); import('classes.author.form.submit.AuthorSubmitForm'); AuthorSubmitForm::assignEditors($article); $articleDao->updateObject($article); // Add to end of editing queue import('classes.submission.editor.EditorAction'); if (isset($galley)) { EditorAction::expediteSubmission($article, $this->request); } if ($this->getData('destination') == "issue") { // Add to an existing issue $issueId = $this->getData('issueId'); $this->scheduleForPublication($articleId, $issueId); } // Import the references list. $citationDao = DAORegistry::getDAO('CitationDAO'); $rawCitationList = $article->getCitations(); $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList); // Index article. import('classes.search.ArticleSearchIndex'); $articleSearchIndex = new ArticleSearchIndex(); $articleSearchIndex->articleMetadataChanged($article); $articleSearchIndex->articleChangesFinished(); }
/** * Save changes to paper. * @return int the paper ID */ function execute() { $paperDao =& DAORegistry::getDAO('PaperDAO'); $authorDao =& DAORegistry::getDAO('AuthorDAO'); $trackDao =& DAORegistry::getDAO('TrackDAO'); // Update paper $paper =& $this->paper; $paper->setTitle($this->getData('title'), null); // Localized $track =& $trackDao->getTrack($paper->getTrackId()); $paper->setAbstract($this->getData('abstract'), null); // Localized $paper->setDiscipline($this->getData('discipline'), null); // Localized $paper->setSubjectClass($this->getData('subjectClass'), null); // Localized $paper->setSubject($this->getData('subject'), null); // Localized $paper->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $paper->setCoverageChron($this->getData('coverageChron'), null); // Localized $paper->setCoverageSample($this->getData('coverageSample'), null); // Localized $paper->setType($this->getData('type'), null); // Localized $paper->setLanguage($this->getData('language')); $paper->setSponsor($this->getData('sponsor'), null); // Localized $paper->setCitations($this->getData('citations')); // Update authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $paper->getAuthor($authors[$i]['authorId']); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); $author->setAffiliation($authors[$i]['affiliation']); $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setUrl($authors[$i]['url']); $author->setBiography($authors[$i]['biography'], null); // Localized $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); if ($isExistingAuthor == false) { $paper->addAuthor($author); } } } // Remove deleted authors $deletedAuthors = explode(':', $this->getData('deletedAuthors')); for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) { $paper->removeAuthor($deletedAuthors[$i]); } // Save the paper $paperDao->updatePaper($paper); // Update search index import('search.PaperSearchIndex'); PaperSearchIndex::indexPaperMetadata($paper); return $paper->getId(); }