/**
* Add the comment.
*/
function execute()
{
// Personalized execute() method since now there are possibly two comments contained within each form submission.
$commentDao =& DAORegistry::getDAO('ArticleCommentDAO');
$this->insertedComments = array();
// Assign all common information
$comment = new ArticleComment();
$comment->setCommentType($this->commentType);
$comment->setRoleId($this->roleId);
$comment->setArticleId($this->article->getId());
$comment->setAssocId($this->assocId);
$comment->setAuthorId($this->user->getId());
$comment->setCommentTitle($this->getData('commentTitle'));
$comment->setDatePosted(Core::getCurrentDate());
// If comments "For authors and editor" submitted
if ($this->getData('authorComments') != null) {
$comment->setComments($this->getData('authorComments'));
$comment->setViewable(1);
array_push($this->insertedComments, $commentDao->insertArticleComment($comment));
}
// If comments "For editor" submitted
if ($this->getData('comments') != null) {
$comment->setComments($this->getData('comments'));
$comment->setViewable(null);
array_push($this->insertedComments, $commentDao->insertArticleComment($comment));
}
}
/**
* Email editor decision comment.
* @param $sectionEditorSubmission object
* @param $send boolean
* @param $request object
*/
function emailEditorDecisionComment($sectionEditorSubmission, $send, $request)
{
$userDao =& DAORegistry::getDAO('UserDAO');
$articleCommentDao =& DAORegistry::getDAO('ArticleCommentDAO');
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$journal =& $request->getJournal();
$user =& $request->getUser();
import('classes.mail.ArticleMailTemplate');
$decisionTemplateMap = array(SUBMISSION_EDITOR_DECISION_ACCEPT => 'EDITOR_DECISION_ACCEPT', SUBMISSION_EDITOR_DECISION_PENDING_REVISIONS => 'EDITOR_DECISION_REVISIONS', SUBMISSION_EDITOR_DECISION_RESUBMIT => 'EDITOR_DECISION_RESUBMIT', SUBMISSION_EDITOR_DECISION_DECLINE => 'EDITOR_DECISION_DECLINE');
$decisions = $sectionEditorSubmission->getDecisions();
$decisions = array_pop($decisions);
// Rounds
$decision = array_pop($decisions);
$decisionConst = $decision ? $decision['decision'] : null;
$email = new ArticleMailTemplate($sectionEditorSubmission, isset($decisionTemplateMap[$decisionConst]) ? $decisionTemplateMap[$decisionConst] : null);
$copyeditor = $sectionEditorSubmission->getUserBySignoffType('SIGNOFF_COPYEDITING_INITIAL');
if ($send && !$email->hasErrors()) {
HookRegistry::call('SectionEditorAction::emailEditorDecisionComment', array(&$sectionEditorSubmission, &$send, &$request));
$email->send($request);
if ($decisionConst == SUBMISSION_EDITOR_DECISION_DECLINE) {
// If the most recent decision was a decline,
// sending this email archives the submission.
$sectionEditorSubmission->setStatus(STATUS_ARCHIVED);
$sectionEditorSubmission->stampStatusModified();
$sectionEditorSubmissionDao->updateSectionEditorSubmission($sectionEditorSubmission);
}
$articleComment = new ArticleComment();
$articleComment->setCommentType(COMMENT_TYPE_EDITOR_DECISION);
$articleComment->setRoleId(Validation::isEditor() ? ROLE_ID_EDITOR : ROLE_ID_SECTION_EDITOR);
$articleComment->setArticleId($sectionEditorSubmission->getId());
$articleComment->setAuthorId($sectionEditorSubmission->getUserId());
$articleComment->setCommentTitle($email->getSubject());
$articleComment->setComments($email->getBody());
$articleComment->setDatePosted(Core::getCurrentDate());
$articleComment->setViewable(true);
$articleComment->setAssocId($sectionEditorSubmission->getId());
$articleCommentDao->insertArticleComment($articleComment);
return true;
} else {
if (!$request->getUserVar('continued')) {
$authorUser =& $userDao->getUser($sectionEditorSubmission->getUserId());
$authorEmail = $authorUser->getEmail();
$email->assignParams(array('editorialContactSignature' => $user->getContactSignature(), 'authorName' => $authorUser->getFullName(), 'journalTitle' => $journal->getLocalizedTitle()));
$email->addRecipient($authorEmail, $authorUser->getFullName());
if ($journal->getSetting('notifyAllAuthorsOnDecision')) {
foreach ($sectionEditorSubmission->getAuthors() as $author) {
if ($author->getEmail() != $authorEmail) {
$email->addCc($author->getEmail(), $author->getFullName());
}
}
}
} elseif ($request->getUserVar('importPeerReviews')) {
$reviewAssignmentDao =& DAORegistry::getDAO('ReviewAssignmentDAO');
$reviewAssignments =& $reviewAssignmentDao->getBySubmissionId($sectionEditorSubmission->getId(), $sectionEditorSubmission->getCurrentRound());
$reviewIndexes =& $reviewAssignmentDao->getReviewIndexesForRound($sectionEditorSubmission->getId(), $sectionEditorSubmission->getCurrentRound());
$body = '';
foreach ($reviewAssignments as $reviewAssignment) {
// If the reviewer has completed the assignment, then import the review.
if ($reviewAssignment->getDateCompleted() != null && !$reviewAssignment->getCancelled()) {
// Get the comments associated with this review assignment
$articleComments =& $articleCommentDao->getArticleComments($sectionEditorSubmission->getId(), COMMENT_TYPE_PEER_REVIEW, $reviewAssignment->getId());
if ($articleComments) {
$body .= "------------------------------------------------------\n";
$body .= __('submission.comments.importPeerReviews.reviewerLetter', array('reviewerLetter' => String::enumerateAlphabetically($reviewIndexes[$reviewAssignment->getReviewId()]))) . "\n";
if (is_array($articleComments)) {
foreach ($articleComments as $comment) {
// If the comment is viewable by the author, then add the comment.
if ($comment->getViewable()) {
$body .= String::html2text($comment->getComments()) . "\n\n";
}
}
}
$body .= "------------------------------------------------------\n\n";
}
if ($reviewFormId = $reviewAssignment->getReviewFormId()) {
$reviewId = $reviewAssignment->getId();
$reviewFormResponseDao =& DAORegistry::getDAO('ReviewFormResponseDAO');
$reviewFormElementDao =& DAORegistry::getDAO('ReviewFormElementDAO');
$reviewFormElements =& $reviewFormElementDao->getReviewFormElements($reviewFormId);
if (!$articleComments) {
$body .= "------------------------------------------------------\n";
$body .= __('submission.comments.importPeerReviews.reviewerLetter', array('reviewerLetter' => String::enumerateAlphabetically($reviewIndexes[$reviewAssignment->getReviewId()]))) . "\n\n";
}
foreach ($reviewFormElements as $reviewFormElement) {
if ($reviewFormElement->getIncluded()) {
$body .= String::html2text($reviewFormElement->getLocalizedQuestion()) . ": \n";
$reviewFormResponse = $reviewFormResponseDao->getReviewFormResponse($reviewId, $reviewFormElement->getId());
if ($reviewFormResponse) {
$possibleResponses = $reviewFormElement->getLocalizedPossibleResponses();
if (in_array($reviewFormElement->getElementType(), $reviewFormElement->getMultipleResponsesElementTypes())) {
if ($reviewFormElement->getElementType() == REVIEW_FORM_ELEMENT_TYPE_CHECKBOXES) {
foreach ($reviewFormResponse->getValue() as $value) {
$body .= "\t" . String::html2text($possibleResponses[$value - 1]['content']) . "\n";
}
} else {
$body .= "\t" . String::html2text($possibleResponses[$reviewFormResponse->getValue() - 1]['content']) . "\n";
}
$body .= "\n";
} else {
$body .= "\t" . $reviewFormResponse->getValue() . "\n\n";
}
}
}
}
$body .= "------------------------------------------------------\n\n";
}
}
}
$oldBody = $email->getBody();
if (!empty($oldBody)) {
$oldBody .= "\n";
}
$email->setBody($oldBody . $body);
}
$email->displayEditForm($request->url(null, null, 'emailEditorDecisionComment', 'send'), array('articleId' => $sectionEditorSubmission->getId()), 'submission/comment/editorDecisionEmail.tpl', array('isAnEditor' => true));
return false;
}
}
/**
* Add the comment.
*/
function execute()
{
$commentDao =& DAORegistry::getDAO('ArticleCommentDAO');
$article = $this->article;
// Insert new comment
$comment = new ArticleComment();
$comment->setCommentType($this->commentType);
$comment->setRoleId($this->roleId);
$comment->setArticleId($article->getId());
$comment->setAssocId($this->assocId);
$comment->setAuthorId($this->user->getId());
$comment->setCommentTitle($this->getData('commentTitle'));
$comment->setComments($this->getData('comments'));
$comment->setDatePosted(Core::getCurrentDate());
$comment->setViewable($this->getData('viewable'));
$this->commentId = $commentDao->insertArticleComment($comment);
}
/**
* Email editor decision comment.
* @param $authorSubmission object
* @param $send boolean
* @param $request object
*/
function emailEditorDecisionComment($authorSubmission, $send, $request)
{
$userDao =& DAORegistry::getDAO('UserDAO');
$journal =& $request->getJournal();
$user =& $request->getUser();
import('classes.mail.ArticleMailTemplate');
$email = new ArticleMailTemplate($authorSubmission);
$editAssignments = $authorSubmission->getEditAssignments();
$editors = array();
foreach ($editAssignments as $editAssignment) {
array_push($editors, $userDao->getUser($editAssignment->getEditorId()));
}
if ($send && !$email->hasErrors()) {
HookRegistry::call('AuthorAction::emailEditorDecisionComment', array(&$authorSubmission, &$email));
$email->send($request);
$articleCommentDao =& DAORegistry::getDAO('ArticleCommentDAO');
$articleComment = new ArticleComment();
$articleComment->setCommentType(COMMENT_TYPE_EDITOR_DECISION);
$articleComment->setRoleId(ROLE_ID_AUTHOR);
$articleComment->setArticleId($authorSubmission->getId());
$articleComment->setAuthorId($authorSubmission->getUserId());
$articleComment->setCommentTitle($email->getSubject());
$articleComment->setComments($email->getBody());
$articleComment->setDatePosted(Core::getCurrentDate());
$articleComment->setViewable(true);
$articleComment->setAssocId($authorSubmission->getId());
$articleCommentDao->insertArticleComment($articleComment);
return true;
} else {
if (!$request->getUserVar('continued')) {
$email->setSubject($authorSubmission->getLocalizedTitle());
if (!empty($editors)) {
foreach ($editors as $editor) {
$email->addRecipient($editor->getEmail(), $editor->getFullName());
}
} else {
$email->addRecipient($journal->getSetting('contactEmail'), $journal->getSetting('contactName'));
}
}
$email->displayEditForm(Request::url(null, null, 'emailEditorDecisionComment', 'send'), array('articleId' => $authorSubmission->getId()), 'submission/comment/editorDecisionEmail.tpl');
return false;
}
}
function importArticles()
{
assert($this->xml->name == 'articles');
$articleDAO =& DAORegistry::getDAO('ArticleDAO');
$articles = $articleDAO->getArticlesByJournalId($this->journal->getId());
$journalFileManager = new JournalFileManager($this->journal);
$publicFileManager =& new PublicFileManager();
$this->nextElement();
while ($this->xml->name == 'article') {
$articleXML = $this->getCurrentElementAsDom();
$article = new Article();
$article->setJournalId($this->journal->getId());
$article->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleXML->userId));
$article->setSectionId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_SECTION, (int) $articleXML->sectionId));
$article->setLocale((string) $articleXML->locale);
$article->setLanguage((string) $articleXML->language);
$article->setCommentsToEditor((string) $articleXML->commentsToEditor);
$article->setCitations((string) $articleXML->citations);
$article->setDateSubmitted((string) $articleXML->dateSubmitted);
$article->setDateStatusModified((string) $articleXML->dateStatusModified);
$article->setLastModified((string) $articleXML->lastModified);
$article->setStatus((int) $articleXML->status);
$article->setSubmissionProgress((int) $articleXML->submissionProgress);
$article->setCurrentRound((int) $articleXML->currentRound);
$article->setPages((string) $articleXML->pages);
$article->setFastTracked((int) $articleXML->fastTracked);
$article->setHideAuthor((int) $articleXML->hideAuthor);
$article->setCommentsStatus((int) $articleXML->commentsStatus);
$articleDAO->insertArticle($article);
$oldArticleId = (int) $articleXML->oldId;
$this->restoreDataObjectSettings($articleDAO, $articleXML->settings, 'article_settings', 'article_id', $article->getId());
$article =& $articleDAO->getArticle($article->getId());
// Reload article with restored settings
$covers = $article->getFileName(null);
if ($covers) {
foreach ($covers as $locale => $oldCoverFileName) {
$sourceFile = $this->publicFolderPath . '/' . $oldCoverFileName;
$extension = $publicFileManager->getExtension($oldCoverFileName);
$destFile = 'cover_issue_' . $article->getId() . "_{$locale}.{$extension}";
$publicFileManager->copyJournalFile($this->journal->getId(), $sourceFile, $destFile);
unlink($sourceFile);
$article->setFileName($destFile, $locale);
$articleDAO->updateArticle($article);
}
}
$articleFileManager = new ArticleFileManager($article->getId());
$authorDAO =& DAORegistry::getDAO('AuthorDAO');
foreach ($articleXML->author as $authorXML) {
$author = new Author();
$author->setArticleId($article->getId());
$author->setFirstName((string) $authorXML->firstName);
$author->setMiddleName((string) $authorXML->middleName);
$author->setLastName((string) $authorXML->lastName);
$author->setSuffix((string) $authorXML->suffix);
$author->setCountry((string) $authorXML->country);
$author->setEmail((string) $authorXML->email);
$author->setUrl((string) $authorXML->url);
$author->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $authorXML->userGroupId));
$author->setPrimaryContact((int) $authorXML->primaryContact);
$author->setSequence((int) $authorXML->sequence);
$authorDAO->insertAuthor($author);
$this->restoreDataObjectSettings($authorDAO, $authorXML->settings, 'author_settings', 'author_id', $author->getId());
unset($author);
}
$articleEmailLogDAO =& DAORegistry::getDAO('ArticleEmailLogDAO');
$emailLogsXML = array();
foreach ($articleXML->emailLogs->emailLog as $emailLogXML) {
array_unshift($emailLogsXML, $emailLogXML);
}
foreach ($emailLogsXML as $emailLogXML) {
$emailLog = new ArticleEmailLogEntry();
$emailLog->setAssocType(ASSOC_TYPE_ARTICLE);
$emailLog->setAssocId($article->getId());
$emailLog->setSenderId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $emailLogXML->senderId));
$emailLog->setDateSent((string) $emailLogXML->dateSent);
$emailLog->setIPAddress((string) $emailLogXML->IPAddress);
$emailLog->setEventType((int) $emailLogXML->eventType);
$emailLog->setFrom((string) $emailLogXML->from);
$emailLog->setRecipients((string) $emailLogXML->recipients);
$emailLog->setCcs((string) $emailLogXML->ccs);
$emailLog->setBccs((string) $emailLogXML->bccs);
$emailLog->setSubject((string) $emailLogXML->subject);
$emailLog->setBody((string) $emailLogXML->body);
$articleEmailLogDAO->insertObject($emailLog);
$this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $emailLogXML->oldId, $emailLog->getId());
}
$articleFileDAO =& DAORegistry::getDAO('ArticleFileDAO');
foreach ($articleXML->articleFile as $articleFileXML) {
try {
$articleFile = new ArticleFile();
$articleFile->setArticleId($article->getId());
$articleFile->setSourceFileId((int) $articleFileXML->sourceFileId);
$articleFile->setSourceRevision((int) $articleFileXML->sourceRevision);
$articleFile->setRevision((int) $articleFileXML->revision);
$articleFile->setFileName((string) $articleFileXML->fileName);
$articleFile->setFileType((string) $articleFileXML->fileType);
$articleFile->setFileSize((string) $articleFileXML->fileSize);
$articleFile->setOriginalFileName((string) $articleFileXML->originalFileName);
$articleFile->setFileStage((int) $articleFileXML->fileStage);
$articleFile->setAssocId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $articleFileXML->assocId));
$articleFile->setDateUploaded((string) $articleFileXML->dateUploaded);
$articleFile->setDateModified((string) $articleFileXML->dateModified);
$articleFile->setRound((int) $articleFileXML->round);
$articleFile->setViewable((int) $articleFileXML->viewable);
$articleFileDAO->insertArticleFile($articleFile);
$oldArticleFileId = (int) $articleFileXML->oldId;
$oldFileName = $articleFile->getFileName();
$stagePath = $articleFileManager->fileStageToPath($articleFile->getFileStage());
$fileInTransferPackage = $this->journalFolderPath . "/articles/{$oldArticleId}/{$stagePath}/{$oldFileName}";
$newFileName = $articleFileManager->generateFilename($articleFile, $articleFile->getFileStage(), $articleFile->getOriginalFileName());
$newFilePath = "/articles/" . $article->getId() . "/{$stagePath}/{$newFileName}";
$journalFileManager->copyFile($fileInTransferPackage, $journalFileManager->filesDir . $newFilePath);
unlink($fileInTransferPackage);
$articleFileDAO->updateArticleFile($articleFile);
$this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $oldArticleFileId, $articleFile->getFileId());
} catch (Exception $e) {
}
}
$articleFiles = $articleFileDAO->getArticleFilesByArticle($article->getId());
foreach ($articleFiles as $articleFile) {
try {
$articleFile->setSourceFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $articleFile->getSourceFileId()));
$articleFileDAO->updateArticleFile($articleFile);
} catch (Exception $e) {
}
}
$suppFileDAO =& DAORegistry::getDAO('SuppFileDAO');
foreach ($articleXML->suppFile as $suppFileXML) {
$suppFile =& new SuppFile();
$suppFile->setArticleId($article->getId());
$suppFile->setRemoteURL((string) $suppFileXML->remoteURL);
$suppFile->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $suppFileXML->fileId));
$suppFile->setType((string) $suppFileXML->type);
$suppFile->setDateCreated((string) $suppFileXML->dateCreated);
$suppFile->setLanguage((string) $suppFileXML->language);
$suppFile->setShowReviewers((int) $suppFileXML->showReviewers);
$suppFile->setDateSubmitted((string) $suppFileXML->dateSubmitted);
$suppFile->setSequence((int) $suppFileXML->sequence);
$suppFileDAO->insertSuppFile($suppFile);
$this->restoreDataObjectSettings($suppFileDAO, $suppFileXML->settings, 'article_supp_file_settings', 'supp_id', $suppFile->getId());
}
$articleCommentDAO =& DAORegistry::getDAO('ArticleCommentDAO');
foreach ($articleXML->articleComment as $articleCommentXML) {
$articleComment = new ArticleComment();
$articleComment->setArticleId($article->getId());
$articleComment->setAssocId($article->getId());
$articleComment->setCommentType((int) $articleCommentXML->commentType);
$articleComment->setRoleId((int) $articleCommentXML->roleId);
$articleComment->setAuthorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleCommentXML->authorId));
$articleComment->setCommentTitle((string) $articleCommentXML->commentTitle);
$articleComment->setComments((string) $articleCommentXML->comments);
$articleComment->setDatePosted((string) $articleCommentXML->datePosted);
$articleComment->setDateModified((string) $articleCommentXML->dateModified);
$articleComment->setViewable((int) $articleCommentXML->viewable);
$articleCommentDAO->insertArticleComment($articleComment);
}
$articleGalleyDAO =& DAORegistry::getDAO('ArticleGalleyDAO');
foreach ($articleXML->articleGalley as $articleGalleyXML) {
$articleGalley = null;
if ($articleGalleyXML->htmlGalley == "1") {
$articleGalley = new ArticleHTMLGalley();
} else {
$articleGalley = new ArticleGalley();
}
$articleGalley->setArticleId($article->getId());
$articleGalley->setLocale((string) $articleGalleyXML->locale);
$articleGalley->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->fileId));
$articleGalley->setLabel((string) $articleGalleyXML->label);
$articleGalley->setSequence((int) $articleGalleyXML->sequence);
$articleGalley->setRemoteURL((string) $articleGalleyXML->remoteURL);
if ($articleGalley instanceof ArticleHTMLGalley) {
$articleGalley->setStyleFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->styleFileId));
}
$articleGalleyDAO->insertGalley($articleGalley);
if ($articleGalley instanceof ArticleHTMLGalley) {
foreach ($articleGalleyXML->htmlGalleyImage as $articleGalleyImageXML) {
$imageId = $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyImageXML);
$articleGalleyDAO->insertGalleyImage($articleGalley->getId(), $imageId);
}
}
$this->restoreDataObjectSettings($articleGalleyDAO, $articleGalleyXML->settings, 'article_galley_settings', 'galley_id', $articleGalley->getId());
}
$noteDAO =& DAORegistry::getDAO('NoteDAO');
foreach ($articleXML->articleNote as $articleNoteXML) {
$articleNote = new Note();
$articleNote->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleNoteXML->userId));
$articleNote->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleNoteXML->fileId));
$articleNote->setAssocType(ASSOC_TYPE_ARTICLE);
$articleNote->setAssocId($article->getId());
$articleNote->setDateCreated((string) $articleNoteXML->dateCreated);
$articleNote->setDateModified((string) $articleNoteXML->dateModified);
$articleNote->setContents((string) $articleNoteXML->contents);
$articleNote->setTitle((string) $articleNoteXML->title);
$noteDAO->insertObject($articleNote);
}
$editAssignmentDAO =& DAORegistry::getDAO('EditAssignmentDAO');
foreach ($articleXML->editAssignment as $editAssignmentXML) {
$editAssignment = new EditAssignment();
$editAssignment->setArticleId($article->getId());
$editAssignment->setEditorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editAssignmentXML->editorId));
$editAssignment->setCanReview((int) $editAssignmentXML->canReview);
$editAssignment->setCanEdit((int) $editAssignmentXML->canEdit);
$editAssignment->setDateUnderway((string) $editAssignmentXML->dateUnderway);
$editAssignment->setDateNotified((string) $editAssignmentXML->dateNotified);
$editAssignmentDAO->insertEditAssignment($editAssignment);
}
$reviewAssignmentDAO =& DAORegistry::getDAO('ReviewAssignmentDAO');
$reviewFormResponseDAO =& DAORegistry::getDAO('ReviewFormResponseDAO');
foreach ($articleXML->reviewAssignment as $reviewAssignmentXML) {
$reviewAssignment = new ReviewAssignment();
$reviewAssignment->setSubmissionId($article->getId());
$reviewAssignment->setReviewerId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $reviewAssignmentXML->reviewerId));
try {
$reviewAssignment->setReviewerFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $reviewAssignmentXML->reviewerFileId));
} catch (Exception $e) {
$this->logger->log("Arquivo do artigo {$oldArticleId} não encontrado. ID: " . (int) $reviewAssignmentXML->reviewerFileId . "\n");
}
$reviewAssignment->setReviewFormId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM, (int) $reviewAssignmentXML->reviewFormId));
$reviewAssignment->setReviewRoundId((int) $reviewAssignmentXML->reviewRoundId);
$reviewAssignment->setStageId((int) $reviewAssignmentXML->stageId);
$reviewAssignment->setReviewerFullName((string) $reviewAssignmentXML->reviewerFullName);
$reviewAssignment->setCompetingInterests((string) $reviewAssignmentXML->competingInterests);
$reviewAssignment->setRegretMessage((string) $reviewAssignmentXML->regretMessage);
$reviewAssignment->setRecommendation((string) $reviewAssignmentXML->recommendation);
$reviewAssignment->setDateAssigned((string) $reviewAssignmentXML->dateAssigned);
$reviewAssignment->setDateNotified((string) $reviewAssignmentXML->dateNotified);
$reviewAssignment->setDateConfirmed((string) $reviewAssignmentXML->dateConfirmed);
$reviewAssignment->setDateCompleted((string) $reviewAssignmentXML->dateCompleted);
$reviewAssignment->setDateAcknowledged((string) $reviewAssignmentXML->dateAcknowledged);
$reviewAssignment->setDateDue((string) $reviewAssignmentXML->dateDue);
$reviewAssignment->setDateResponseDue((string) $reviewAssignmentXML->dateResponseDue);
$reviewAssignment->setLastModified((string) $reviewAssignmentXML->lastModified);
$reviewAssignment->setDeclined((int) $reviewAssignmentXML->declined);
$reviewAssignment->setReplaced((int) $reviewAssignmentXML->replaced);
$reviewAssignment->setCancelled((int) $reviewAssignmentXML->cancelled);
$reviewAssignment->setQuality((int) $reviewAssignmentXML->quality);
$reviewAssignment->setDateRated((string) $reviewAssignmentXML->dateRated);
$reviewAssignment->setDateReminded((string) $reviewAssignmentXML->dateReminded);
$reviewAssignment->setReminderWasAutomatic((int) $reviewAssignmentXML->reminderWasAutomatic);
$reviewAssignment->setRound((int) $reviewAssignmentXML->round);
$reviewAssignment->setReviewRevision((int) $reviewAssignmentXML->reviewRevision);
$reviewAssignment->setReviewMethod((int) $reviewAssignmentXML->reviewMethod);
$reviewAssignment->setUnconsidered((int) $reviewAssignmentXML->unconsidered);
$reviewAssignmentDAO->insertObject($reviewAssignment);
foreach ($reviewAssignmentXML->formResponses->formResponse as $formResponseXML) {
$reviewFormResponseDAO->update('INSERT INTO review_form_responses
(review_form_element_id, review_id, response_type, response_value)
VALUES
(?, ?, ?, ?)', array($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM_ELEMENT, (int) $formResponseXML->reviewFormElementId), $reviewAssignment->getId(), (string) $formResponseXML->responseType, (string) $formResponseXML->responseValue));
}
}
$signoffDAO =& DAORegistry::getDAO('SignoffDAO');
foreach ($articleXML->signoff as $signoffXML) {
$signoff = new Signoff();
$signoff->setAssocType(ASSOC_TYPE_ARTICLE);
$signoff->setAssocId($article->getId());
$signoff->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $signoffXML->userId));
$signoff->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $signoffXML->fileId));
$signoff->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $signoffXML->userGroupId));
$signoff->setSymbolic((string) $signoffXML->symbolic);
$signoff->setFileRevision((int) $signoffXML->fileRevision);
$signoff->setDateUnderway((string) $signoffXML->dateUnderway);
$signoff->setDateNotified((string) $signoffXML->dateNotified);
$signoff->setDateCompleted((string) $signoffXML->dateCompleted);
$signoff->setDateAcknowledged((string) $signoffXML->dateAcknowledged);
$signoffDAO->insertObject($signoff);
}
$editorSubmissionDAO =& DAORegistry::getDAO('EditorSubmissionDAO');
foreach ($articleXML->editDecisions as $editDecisionXML) {
$editDecisions =& $editorSubmissionDAO->update('INSERT INTO edit_decisions (article_id, round, editor_id, decision, date_decided) values (?, ?, ?, ?, ?)', array($article->getId(), (string) $editDecisionXML->round, $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editDecisionXML->editorId), (string) $editDecisionXML->decision, (string) $editDecisionXML->dateDecided));
}
$publishedArticleDAO =& DAORegistry::getDAO('PublishedArticleDAO');
if (isset($articleXML->publishedArticle)) {
$publishedArticleXML = $articleXML->publishedArticle;
$publishedArticle = new PublishedArticle();
$publishedArticle->setId($article->getId());
$publishedArticle->setIssueId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ISSUE, (int) $publishedArticleXML->issueId));
$publishedArticle->setDatePublished((string) $publishedArticleXML->datePublished);
$publishedArticle->setSeq((int) $publishedArticleXML->seq);
$publishedArticle->setAccessStatus((int) $publishedArticleXML->accessStatus);
$publishedArticleDAO->insertPublishedArticle($publishedArticle);
}
$articleEventLogDAO =& DAORegistry::getDAO('ArticleEventLogDAO');
$eventLogsXML =& iterator_to_array($articleXML->eventLogs->eventLog);
$eventLogsXML = array();
foreach ($articleXML->eventLogs->eventLog as $eventLogXML) {
array_unshift($eventLogsXML, $eventLogXML);
}
foreach ($eventLogsXML as $eventLogXML) {
$eventLog = new ArticleEventLogEntry();
$eventLog->setAssocType(ASSOC_TYPE_ARTICLE);
$eventLog->setAssocId($article->getId());
$eventLog->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $eventLogXML->userId));
$eventLog->setDateLogged((string) $eventLogXML->dateLogged);
$eventLog->setIPAddress((string) $eventLogXML->IPAddress);
$eventLog->setEventType((int) $eventLogXML->eventType);
$eventLog->setMessage((string) $eventLogXML->message);
$eventLog->setIsTranslated((int) $eventLogXML->isTranslated);
$articleEventLogDAO->insertObject($eventLog);
$this->restoreDataObjectSettings($articleEventLogDAO, $eventLogXML->settings, 'event_log_settings', 'log_id', $eventLog->getId());
}
try {
$article->setSubmissionFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->submissionFileId));
} catch (Exception $e) {
}
try {
$article->setRevisedFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->revisedFileId));
} catch (Exception $e) {
}
try {
$article->setReviewFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->reviewFileId));
} catch (Exception $e) {
}
try {
$article->setEditorFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->editorFileId));
} catch (Exception $e) {
}
$articleDAO->updateArticle($article);
$this->nextElement();
}
}
/**
* Creates and returns an article comment object from a row
* @param $row array
* @return ArticleComment object
*/
function &_returnArticleCommentFromRow($row)
{
$articleComment = new ArticleComment();
$articleComment->setId($row['comment_id']);
$articleComment->setCommentType($row['comment_type']);
$articleComment->setRoleId($row['role_id']);
$articleComment->setArticleId($row['article_id']);
$articleComment->setAssocId($row['assoc_id']);
$articleComment->setAuthorId($row['author_id']);
$articleComment->setCommentTitle($row['comment_title']);
$articleComment->setComments($row['comments']);
$articleComment->setDatePosted($this->datetimeFromDB($row['date_posted']));
$articleComment->setDateModified($this->datetimeFromDB($row['date_modified']));
$articleComment->setViewable($row['viewable']);
HookRegistry::call('ArticleCommentDAO::_returnArticleCommentFromRow', array(&$articleComment, &$row));
return $articleComment;
}
/**
* Email editor decision comment
* @param $sectionEditorSubmission object
* @param $send boolean
*/
function emailEditorDecisionComment($sectionEditorSubmission, $send)
{
$userDao =& DAORegistry::getDAO('UserDAO');
$articleCommentDao =& DAORegistry::getDAO('ArticleCommentDAO');
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$journal =& Request::getJournal();
$user =& Request::getUser();
import('classes.mail.ArticleMailTemplate');
$decisionTemplateMap = array(SUBMISSION_SECTION_DECISION_APPROVED => 'SECTION_DECISION_APPROVED', SUBMISSION_SECTION_DECISION_RESUBMIT => 'SECTION_DECISION_RESUBMIT', SUBMISSION_SECTION_DECISION_INCOMPLETE => 'SECTION_DECISION_INCOMPLETE', SUBMISSION_SECTION_DECISION_DECLINED => 'SECTION_DECISION_DECLINE', SUBMISSION_SECTION_DECISION_EXEMPTED => 'SECTION_DECISION_EXEMPT');
$decision = $sectionEditorSubmission->getLastSectionDecision();
if ($decision->getDecision() == SUBMISSION_SECTION_DECISION_APPROVED && $decision->getReviewType() == REVIEW_TYPE_FR) {
$email = new ArticleMailTemplate($sectionEditorSubmission, null, 'SECTION_DECISION_FR_APPROVED');
} elseif ($decision->getDecision() == SUBMISSION_SECTION_DECISION_EXEMPTED && $decision->getComments() == null) {
return true;
} else {
$email = new ArticleMailTemplate($sectionEditorSubmission, null, isset($decisionTemplateMap[$decision->getDecision()]) ? $decisionTemplateMap[$decision->getDecision()] : null);
}
$copyeditor = $sectionEditorSubmission->getUserBySignoffType('SIGNOFF_COPYEDITING_INITIAL');
if ($send && !$email->hasErrors()) {
HookRegistry::call('SectionEditorAction::emailEditorDecisionComment', array(&$sectionEditorSubmission, &$send));
$email->send();
$articleComment = new ArticleComment();
$articleComment->setCommentType(COMMENT_TYPE_SECTION_DECISION);
$articleComment->setRoleId(Validation::isEditor() ? ROLE_ID_EDITOR : ROLE_ID_SECTION_EDITOR);
$articleComment->setArticleId($sectionEditorSubmission->getArticleId());
$articleComment->setAuthorId($user->getUserId());
$articleComment->setCommentTitle($email->getSubject());
$articleComment->setComments($email->getBody());
$articleComment->setDatePosted(Core::getCurrentDate());
$articleComment->setViewable(true);
$articleComment->setAssocId($sectionEditorSubmission->getArticleId());
$articleCommentDao->insertArticleComment($articleComment);
return true;
} else {
if (!Request::getUserVar('continued')) {
$authorUser =& $userDao->getUser($sectionEditorSubmission->getUserId());
$authorEmail = $authorUser->getEmail();
$email->assignParams(array('editorialContactSignature' => $user->getContactSignature(), 'authorName' => $authorUser->getFullName(), 'urlOngoing' => Request::url(null, 'author', 'index', 'ongoingResearches'), 'urlDrafts' => Request::url(null, 'author', 'index', 'proposalsToSubmit'), 'url' => Request::url(null, 'author', 'submissionReview', $sectionEditorSubmission->getArticleId()), 'reviewType' => Locale::translate($decision->getReviewTypeKey()), 'journalTitle' => $journal->getLocalizedTitle()));
$email->addRecipient($authorEmail, $authorUser->getFullName());
if ($journal->getSetting('notifyAllAuthorsOnDecision')) {
foreach ($sectionEditorSubmission->getAuthors() as $author) {
if ($author->getEmail() != $authorEmail) {
$email->addCc($author->getEmail(), $author->getFullName());
}
}
}
import('classes.file.TemporaryFileManager');
$temporaryFileManager = new TemporaryFileManager();
$decisionFiles =& $decision->getDecisionFiles();
foreach ($decisionFiles as $file) {
if ($file) {
$temporaryFile = $temporaryFileManager->articleToTemporaryFile($file, $user->getId());
$email->addPersistAttachment($temporaryFile);
}
}
} elseif (Request::getUserVar('importPeerReviews')) {
$reviewAssignmentDao =& DAORegistry::getDAO('ReviewAssignmentDAO');
$reviewAssignments =& $reviewAssignmentDao->getByDecisionId($sectionEditorSubmission->getLastSectionDecisionId());
$reviewIndexes =& $reviewAssignmentDao->getReviewIndexesForDecision($sectionEditorSubmission->getLastSectionDecisionId());
$body = '';
foreach ($reviewAssignments as $reviewAssignment) {
// If the reviewer has completed the assignment, then import the review.
if ($reviewAssignment->getDateCompleted() != null && !$reviewAssignment->getCancelled()) {
// Get the comments associated with this review assignment
$articleComments =& $articleCommentDao->getArticleComments($sectionEditorSubmission->getArticleId(), COMMENT_TYPE_PEER_REVIEW, $reviewAssignment->getId());
if ($articleComments) {
$body .= "------------------------------------------------------\n";
$body .= Locale::translate('submission.comments.importPeerReviews.reviewerLetter', array('reviewerLetter' => chr(ord('A') + $reviewIndexes[$reviewAssignment->getId()]))) . "\n";
if (is_array($articleComments)) {
foreach ($articleComments as $comment) {
// If the comment is viewable by the author, then add the comment.
if ($comment->getViewable()) {
$body .= String::html2text($comment->getComments()) . "\n\n";
}
}
}
$body .= "------------------------------------------------------\n\n";
}
if ($reviewFormId = $reviewAssignment->getReviewFormId()) {
$reviewId = $reviewAssignment->getId();
$reviewFormResponseDao =& DAORegistry::getDAO('ReviewFormResponseDAO');
$reviewFormElementDao =& DAORegistry::getDAO('ReviewFormElementDAO');
$reviewFormElements =& $reviewFormElementDao->getReviewFormElements($reviewFormId);
if (!$articleComments) {
$body .= "------------------------------------------------------\n";
$body .= Locale::translate('submission.comments.importPeerReviews.reviewerLetter', array('reviewerLetter' => chr(ord('A') + $reviewIndexes[$reviewAssignment->getId()]))) . "\n\n";
}
foreach ($reviewFormElements as $reviewFormElement) {
if ($reviewFormElement->getIncluded()) {
$body .= String::html2text($reviewFormElement->getLocalizedQuestion()) . ": \n";
$reviewFormResponse = $reviewFormResponseDao->getReviewFormResponse($reviewId, $reviewFormElement->getId());
if ($reviewFormResponse) {
$possibleResponses = $reviewFormElement->getLocalizedPossibleResponses();
if (in_array($reviewFormElement->getElementType(), $reviewFormElement->getMultipleResponsesElementTypes())) {
if ($reviewFormElement->getElementType() == REVIEW_FORM_ELEMENT_TYPE_CHECKBOXES) {
foreach ($reviewFormResponse->getValue() as $value) {
$body .= "\t" . String::html2text($possibleResponses[$value - 1]['content']) . "\n";
}
} else {
$body .= "\t" . String::html2text($possibleResponses[$reviewFormResponse->getValue() - 1]['content']) . "\n";
}
$body .= "\n";
} else {
$body .= "\t" . String::html2text($reviewFormResponse->getValue()) . "\n\n";
}
}
}
}
$body .= "------------------------------------------------------\n\n";
}
}
}
$oldBody = $email->getBody();
if (!empty($oldBody)) {
$oldBody .= "\n";
}
$email->setBody($oldBody . $body);
}
$email->displayEditForm(Request::url(null, null, 'emailEditorDecisionComment', 'send'), array('articleId' => $sectionEditorSubmission->getArticleId()), 'submission/comment/editorDecisionEmail.tpl', array('isAnEditor' => true));
return false;
}
}
