function handleArticleNode(&$journal, &$articleNode, &$issue, &$section, &$article, &$publishedArticle, &$errors, &$user, $isCommandLine, &$dependentItems) { $errors = array(); $journalSupportedLocales = array_keys($journal->getSupportedLocaleNames()); // => journal locales must be set up before $journalPrimaryLocale = $journal->getPrimaryLocale(); $publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO'); $articleDao =& DAORegistry::getDAO('ArticleDAO'); $article = new Article(); $article->setLocale($journalPrimaryLocale); // FIXME in bug #5543 $article->setJournalId($journal->getId()); $article->setUserId($user->getId()); $article->setSectionId($section->getId()); $article->setStatus(STATUS_PUBLISHED); $article->setSubmissionProgress(0); $article->setDateSubmitted(Core::getCurrentDate()); $article->stampStatusModified(); $titleExists = false; for ($index = 0; $node = $articleNode->getChildByName('title', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleTitleLocaleUnsupported', array('articleTitle' => $node->getValue(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setTitle($node->getValue(), $locale); $titleExists = true; } if (!$titleExists || $article->getTitle($journalPrimaryLocale) == "") { $errors[] = array('plugins.importexport.native.import.error.articleTitleMissing', array('issueTitle' => $issue->getIssueIdentification(), 'sectionTitle' => $section->getLocalizedTitle())); return false; } for ($index = 0; $node = $articleNode->getChildByName('abstract', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleAbstractLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setAbstract($node->getValue(), $locale); } if ($indexingNode = $articleNode->getChildByName('indexing')) { for ($index = 0; $node = $indexingNode->getChildByName('discipline', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleDisciplineLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setDiscipline($node->getValue(), $locale); } for ($index = 0; $node = $indexingNode->getChildByName('type', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleTypeLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setType($node->getValue(), $locale); } for ($index = 0; $node = $indexingNode->getChildByName('subject', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleSubjectLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setSubject($node->getValue(), $locale); } for ($index = 0; $node = $indexingNode->getChildByName('subject_class', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleSubjectClassLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setSubjectClass($node->getValue(), $locale); } if ($coverageNode = $indexingNode->getChildByName('coverage')) { for ($index = 0; $node = $coverageNode->getChildByName('geographical', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleCoverageGeoLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setCoverageGeo($node->getValue(), $locale); } for ($index = 0; $node = $coverageNode->getChildByName('chronological', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleCoverageChronLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setCoverageChron($node->getValue(), $locale); } for ($index = 0; $node = $coverageNode->getChildByName('sample', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleCoverageSampleLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setCoverageSample($node->getValue(), $locale); } } } for ($index = 0; $node = $articleNode->getChildByName('sponsor', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleSponsorLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setSponsor($node->getValue(), $locale); } if ($node = $articleNode->getChildByName('pages')) { $article->setPages($node->getValue()); } if ($language = $articleNode->getAttribute('language')) { $article->setLanguage($language); } /* --- Handle authors --- */ $hasErrors = false; for ($index = 0; $node = $articleNode->getChildByName('author', $index); $index++) { if (!NativeImportDom::handleAuthorNode($journal, $node, $issue, $section, $article, $authorErrors)) { $errors = array_merge($errors, $authorErrors); $hasErrors = true; } } if ($hasErrors) { return false; } /* --- Handle covers --- */ for ($index = 0; $node = $articleNode->getChildByName('cover', $index); $index++) { if (!NativeImportDom::handleArticleCoverNode($journal, $node, $article, $coverErrors, $isCommandLine)) { $errors = array_merge($errors, $coverErrors); $hasErrors = true; } } for ($index = 0; $node = $articleNode->getChildByName('id', $index); $index++) { switch ($node->getAttribute('type')) { case 'doi': $article->setStoredDOI($node->getValue()); break; } } $articleDao->insertArticle($article); $dependentItems[] = array('article', $article); // Create submission mangement records $signoffDao =& DAORegistry::getDAO('SignoffDAO'); $initialCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $article->getId()); $initialCopyeditSignoff->setUserId(0); $signoffDao->updateObject($initialCopyeditSignoff); $authorCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId()); $authorCopyeditSignoff->setUserId(0); $signoffDao->updateObject($authorCopyeditSignoff); $finalCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $article->getId()); $finalCopyeditSignoff->setUserId(0); $signoffDao->updateObject($finalCopyeditSignoff); $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId()); $layoutSignoff->setUserId(0); $signoffDao->updateObject($layoutSignoff); $authorProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId()); $authorProofSignoff->setUserId(0); $signoffDao->updateObject($authorProofSignoff); $proofreaderProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $article->getId()); $proofreaderProofSignoff->setUserId(0); $signoffDao->updateObject($proofreaderProofSignoff); $layoutProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId()); $layoutProofSignoff->setUserId(0); $signoffDao->updateObject($layoutProofSignoff); // Log the import in the article event log. import('classes.article.log.ArticleLog'); import('classes.article.log.ArticleEventLogEntry'); ArticleLog::logEvent($article->getId(), ARTICLE_LOG_ARTICLE_IMPORT, ARTICLE_LOG_TYPE_DEFAULT, 0, 'log.imported', array('userName' => $user->getFullName(), 'articleId' => $article->getId())); // Insert published article entry. $publishedArticle = new PublishedArticle(); $publishedArticle->setArticleId($article->getId()); $publishedArticle->setIssueId($issue->getId()); if ($node = $articleNode->getChildByName('date_published')) { $publishedDate = strtotime($node->getValue()); if ($publishedDate === -1) { $errors[] = array('plugins.importexport.native.import.error.invalidDate', array('value' => $node->getValue())); return false; } else { $publishedArticle->setDatePublished($publishedDate); } } $node = $articleNode->getChildByName('open_access'); $publishedArticle->setAccessStatus($node ? ARTICLE_ACCESS_OPEN : ARTICLE_ACCESS_ISSUE_DEFAULT); $publishedArticle->setSeq(REALLY_BIG_NUMBER); $publishedArticle->setViews(0); $publishedArticle->setPublicArticleId($articleNode->getAttribute('public_id')); $publishedArticle->setPubId($publishedArticleDao->insertPublishedArticle($publishedArticle)); $publishedArticleDao->resequencePublishedArticles($section->getId(), $issue->getId()); /* --- Galleys (html or otherwise handled simultaneously) --- */ import('classes.file.ArticleFileManager'); $articleFileManager = new ArticleFileManager($article->getId()); /* --- Handle galleys --- */ $hasErrors = false; $galleyCount = 0; for ($index = 0; $index < count($articleNode->children); $index++) { $node = $articleNode->children[$index]; if ($node->getName() == 'htmlgalley') { $isHtml = true; } elseif ($node->getName() == 'galley') { $isHtml = false; } else { continue; } if (!NativeImportDom::handleGalleyNode($journal, $node, $issue, $section, $article, $galleyErrors, $isCommandLine, $isHtml, $galleyCount, $articleFileManager)) { $errors = array_merge($errors, $galleyErrors); $hasErrors = true; } $galleyCount++; unset($node); } if ($hasErrors) { return false; } /* --- Handle supplemental files --- */ $hasErrors = false; for ($index = 0; $node = $articleNode->getChildByName('supplemental_file', $index); $index++) { if (!NativeImportDom::handleSuppFileNode($journal, $node, $issue, $section, $article, $suppFileErrors, $isCommandLine, $articleFileManager)) { $errors = array_merge($errors, $suppFileErrors); $hasErrors = true; } } if ($hasErrors) { return false; } // Index the inserted article. import('classes.search.ArticleSearchIndex'); ArticleSearchIndex::indexArticleMetadata($article); ArticleSearchIndex::indexArticleFiles($article); return true; }
/** * Save settings. */ function execute($editArticleId) { $this->editArticleID = $editArticleId; $articleDao =& DAORegistry::getDAO('ArticleDAO'); $signoffDao =& DAORegistry::getDAO('SignoffDAO'); $sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO'); $application =& PKPApplication::getApplication(); $request =& $application->getRequest(); $user =& $request->getUser(); $router =& $request->getRouter(); $journal =& $router->getContext($request); $article = new Article(); $article->setLocale($journal->getPrimaryLocale()); // FIXME in bug #5543 $article->setUserId($user->getId()); $article->setJournalId($journal->getId()); $article->setSectionId($this->getData('sectionId')); $article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2)); $article->setTitle($this->getData('title'), null); // Localized //add Original Journal to Abstract $orig_journal = $this->getData('originalJournal'); $abstr = $this->getData('abstract'); foreach (array_keys($abstr) as $abs_key) { $abstr[$abs_key] .= ' <p id="originalPub"> ' . $orig_journal . ' </p> '; // $abstr[$abs_key] .= ' <p id="originalPub"> ' . $orig_journal[$abs_key]. ' </p> '; //OriginalJournal in EditPlugin only a string and not an array... $this->setData('abstract', $abstr); } $article->setAbstract($this->getData('abstract'), null); // Localized $article->setDiscipline($this->getData('discipline'), null); // Localized $article->setSubjectClass($this->getData('subjectClass'), null); // Localized $article->setSubject($this->getData('subject'), null); // Localized $article->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $article->setCoverageChron($this->getData('coverageChron'), null); // Localized $article->setCoverageSample($this->getData('coverageSample'), null); // Localized $article->setType($this->getData('type'), null); // Localized $article->setSponsor($this->getData('sponsor'), null); // Localized $article->setCitations($this->getData('citations')); $article->setPages($this->getData('pages')); // Set some default values so the ArticleDAO doesn't complain when adding this article $article->setDateSubmitted(Core::getCurrentDate()); $article->setStatus(STATUS_PUBLISHED); $article->setSubmissionProgress(0); $article->stampStatusModified(); $article->setCurrentRound(1); $article->setFastTracked(1); $article->setHideAuthor(0); $article->setCommentsStatus(0); // As article has an ID already set it $article->setId($this->editArticleID); $articleId = $this->editArticleID; //delete prior Authors to prevent from double saving the same authors $authorDao =& DAORegistry::getDAO('AuthorDAO'); $authorDao->deleteAuthorsByArticle($articleId); // Add authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $article->getAuthor($authors[$i]['authorId']); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setSubmissionId($articleId); $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); if (array_key_exists('affiliation', $authors[$i])) { $author->setAffiliation($authors[$i]['affiliation'], null); } $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setUrl($authors[$i]['url']); if (array_key_exists('competingInterests', $authors[$i])) { $author->setCompetingInterests($authors[$i]['competingInterests'], null); } $author->setBiography($authors[$i]['biography'], null); $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); if ($isExistingAuthor == false) { $article->addAuthor($author); } } } // Check whether the user gave a handle and create a handleSubmissionFile in case $submissionHandle = $this->getData('submissionHandle'); $handleSubmissionFileId; $handleCheck = FALSE; //import FileManager before creating files because otherwise naming of the copied files failes import('classes.file.ArticleFileManager'); foreach (array_keys($submissionHandle) as $locale) { if (!empty($submissionHandle[$locale])) { $this->deleteOldFile("submission/original", $articleId); // $this->deleteOldFile("submission/copyedit", $articleId); $handleCheck = TRUE; $handleSubmissionId = $this->createHandleTXTFile($submissionHandle[$locale], $articleId, 'submission'); $handleSubmissionPDFId = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'submission'); //Add the handle submission files as galley $this->setGalley($articleId, $handleSubmissionPDFId, $locale, 'application/pdf'); } if ($handleCheck == TRUE) { if ($locale == $journal->getPrimaryLocale()) { $article->setSubmissionFileId($handleSubmissionPDFId); $article->SetReviewFileId($handleSubmissionPDFId); } // Update file search index import('classes.search.ArticleSearchIndex'); if (isset($galley)) { ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId()); } } } // Add the submission files as galleys import('classes.file.TemporaryFileManager'); import('classes.file.ArticleFileManager'); $tempFileIds = $this->getData('tempFileId'); $temporaryFileManager = new TemporaryFileManager(); $articleFileManager = new ArticleFileManager($articleId); $tempFileCheck = FALSE; foreach (array_keys($tempFileIds) as $locale) { $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId()); $fileId = null; if ($temporaryFile) { $this->deleteOldFile("submission/original", $articleId); $this->deleteOldFile("submission/copyedit", $articleId); $tempFileCheck = TRUE; $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION); $fileType = $temporaryFile->getFileType(); $this->setGalley($articleId, $fileId, $locale, $fileType); // $galley =& $this->setGalley($articleId, $fileId, $locale, $fileType); } if ($tempFileCheck == TRUE) { if ($locale == $journal->getPrimaryLocale()) { $article->setSubmissionFileId($fileId); $article->SetReviewFileId($fileId); } // Update file search index import('classes.search.ArticleSearchIndex'); if (isset($galley)) { ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId()); } } } //Check whether the user gave a handle and create handleSupplFile in case $supplHandle = $this->getData('supplHandle'); $handleSuppFileId = null; foreach (array_keys($supplHandle) as $locale) { if (!empty($supplHandle[$locale])) { $this->deleteOldFile("supp", $articleId); $handleSuppFileId = $this->createHandleTXTFile($supplHandle[$locale], $articleId, 'supplementary'); $handleSupplPDFFileID = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'supplementary'); } } //Add uploaded Supplementary file $tempSupplFileIds = $this->getData('tempSupplFileId'); foreach (array_keys($tempSupplFileIds) as $locale) { $temporaryFile = $temporaryFileManager->getFile($tempSupplFileIds[$locale], $user->getId()); $fileId = null; if ($temporaryFile) { $this->deleteOldFile("supp", $articleId); $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUPP); $fileType = $temporaryFile->getFileType(); } } // Designate this as the review version by default. /*$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO'); $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId); import('classes.submission.author.AuthorAction'); AuthorAction::designateReviewVersion($authorSubmission, true); */ // Accept the submission /*$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId); $articleFileManager = new ArticleFileManager($articleId); $sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId())); import('classes.submission.sectionEditor.SectionEditorAction'); SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT); */ // Create signoff infrastructure $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId); $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId); $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId); $copyeditInitialSignoff->setUserId(0); $copyeditAuthorSignoff->setUserId($user->getId()); $copyeditFinalSignoff->setUserId(0); $signoffDao->updateObject($copyeditInitialSignoff); $signoffDao->updateObject($copyeditAuthorSignoff); $signoffDao->updateObject($copyeditFinalSignoff); $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId); $layoutSignoff->setUserId(0); $signoffDao->updateObject($layoutSignoff); $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId); $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId); $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId); $proofAuthorSignoff->setUserId($user->getId()); $proofProofreaderSignoff->setUserId(0); $proofLayoutEditorSignoff->setUserId(0); $signoffDao->updateObject($proofAuthorSignoff); $signoffDao->updateObject($proofProofreaderSignoff); $signoffDao->updateObject($proofLayoutEditorSignoff); import('classes.author.form.submit.AuthorSubmitForm'); AuthorSubmitForm::assignEditors($article); $articleDao->updateArticle($article); // Add to end of editing queue import('classes.submission.editor.EditorAction'); if (isset($galley)) { EditorAction::expediteSubmission($article); } // As the article already has an issue, just get it from database $issueDao =& DAORegistry::getDAO('IssueDAO'); $issue =& $issueDao->getIssueByArticleId($this->editArticleID); $issueId = $issue->getIssueId(); //$this->scheduleForPublication($articleId, $issueId); // Index article. import('classes.search.ArticleSearchIndex'); ArticleSearchIndex::indexArticleMetadata($article); // Import the references list. $citationDao =& DAORegistry::getDAO('CitationDAO'); $rawCitationList = $article->getCitations(); $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList); }
/** * Save settings. */ function execute() { $articleDao =& DAORegistry::getDAO('ArticleDAO'); $signoffDao =& DAORegistry::getDAO('SignoffDAO'); $sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO'); $application =& PKPApplication::getApplication(); $request =& $application->getRequest(); $user =& $request->getUser(); $router =& $request->getRouter(); $journal =& $router->getContext($request); $article = new Article(); $article->setLocale($journal->getPrimaryLocale()); // FIXME in bug #5543 $article->setUserId($user->getId()); $article->setJournalId($journal->getId()); $article->setSectionId($this->getData('sectionId')); $article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2)); $article->setTitle($this->getData('title'), null); // Localized $article->setAbstract($this->getData('abstract'), null); // Localized $article->setDiscipline($this->getData('discipline'), null); // Localized $article->setSubjectClass($this->getData('subjectClass'), null); // Localized $article->setSubject($this->getData('subject'), null); // Localized $article->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $article->setCoverageChron($this->getData('coverageChron'), null); // Localized $article->setCoverageSample($this->getData('coverageSample'), null); // Localized $article->setType($this->getData('type'), null); // Localized $article->setSponsor($this->getData('sponsor'), null); // Localized $article->setCitations($this->getData('citations')); $article->setPages($this->getData('pages')); // Set some default values so the ArticleDAO doesn't complain when adding this article $article->setDateSubmitted(Core::getCurrentDate()); $article->setStatus(STATUS_PUBLISHED); $article->setSubmissionProgress(0); $article->stampStatusModified(); $article->setCurrentRound(1); $article->setFastTracked(1); $article->setHideAuthor(0); $article->setCommentsStatus(0); // Insert the article to get it's ID $articleDao->insertArticle($article); $articleId = $article->getId(); // Add authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $article->getAuthor($authors[$i]['authorId']); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setSubmissionId($articleId); $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); if (array_key_exists('affiliation', $authors[$i])) { $author->setAffiliation($authors[$i]['affiliation'], null); } $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setUrl($authors[$i]['url']); if (array_key_exists('competingInterests', $authors[$i])) { $author->setCompetingInterests($authors[$i]['competingInterests'], null); } $author->setBiography($authors[$i]['biography'], null); $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); if ($isExistingAuthor == false) { $article->addAuthor($author); } } } // Add the submission files as galleys import('classes.file.TemporaryFileManager'); import('classes.file.ArticleFileManager'); $tempFileIds = $this->getData('tempFileId'); $temporaryFileManager = new TemporaryFileManager(); $articleFileManager = new ArticleFileManager($articleId); foreach (array_keys($tempFileIds) as $locale) { $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId()); $fileId = null; if ($temporaryFile) { $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION); $fileType = $temporaryFile->getFileType(); if (strstr($fileType, 'html')) { import('classes.article.ArticleHTMLGalley'); $galley = new ArticleHTMLGalley(); } else { import('classes.article.ArticleGalley'); $galley = new ArticleGalley(); } $galley->setArticleId($articleId); $galley->setFileId($fileId); $galley->setLocale($locale); if ($galley->isHTMLGalley()) { $galley->setLabel('HTML'); } else { if (strstr($fileType, 'pdf')) { $galley->setLabel('PDF'); } else { if (strstr($fileType, 'postscript')) { $galley->setLabel('Postscript'); } else { if (strstr($fileType, 'xml')) { $galley->setLabel('XML'); } else { $galley->setLabel(__('common.untitled')); } } } } $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO'); $galleyDao->insertGalley($galley); } if ($locale == $journal->getPrimaryLocale()) { $article->setSubmissionFileId($fileId); $article->SetReviewFileId($fileId); } // Update file search index import('classes.search.ArticleSearchIndex'); if (isset($galley)) { ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId()); } } // Designate this as the review version by default. $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO'); $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId); import('classes.submission.author.AuthorAction'); AuthorAction::designateReviewVersion($authorSubmission, true); // Accept the submission $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId); $articleFileManager = new ArticleFileManager($articleId); $sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId())); import('classes.submission.sectionEditor.SectionEditorAction'); SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT); // Create signoff infrastructure $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId); $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId); $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId); $copyeditInitialSignoff->setUserId(0); $copyeditAuthorSignoff->setUserId($user->getId()); $copyeditFinalSignoff->setUserId(0); $signoffDao->updateObject($copyeditInitialSignoff); $signoffDao->updateObject($copyeditAuthorSignoff); $signoffDao->updateObject($copyeditFinalSignoff); $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId); $layoutSignoff->setUserId(0); $signoffDao->updateObject($layoutSignoff); $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId); $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId); $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId); $proofAuthorSignoff->setUserId($user->getId()); $proofProofreaderSignoff->setUserId(0); $proofLayoutEditorSignoff->setUserId(0); $signoffDao->updateObject($proofAuthorSignoff); $signoffDao->updateObject($proofProofreaderSignoff); $signoffDao->updateObject($proofLayoutEditorSignoff); import('classes.author.form.submit.AuthorSubmitForm'); AuthorSubmitForm::assignEditors($article); $articleDao->updateArticle($article); // Add to end of editing queue import('classes.submission.editor.EditorAction'); if (isset($galley)) { EditorAction::expediteSubmission($article); } if ($this->getData('destination') == "issue") { // Add to an existing issue $issueId = $this->getData('issueId'); $this->scheduleForPublication($articleId, $issueId); } // Index article. import('classes.search.ArticleSearchIndex'); ArticleSearchIndex::indexArticleMetadata($article); // Import the references list. $citationDao =& DAORegistry::getDAO('CitationDAO'); $rawCitationList = $article->getCitations(); $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList); }
function handleArticleNode(&$journal, &$articleNode, &$issue, &$section, &$article, &$publishedArticle, &$errors, &$user, $isCommandLine, &$dependentItems) { $errors = array(); $journalSupportedLocales = array_keys($journal->getSupportedLocaleNames()); // => journal locales must be set up before $journalPrimaryLocale = $journal->getPrimaryLocale(); $publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO'); $articleDao =& DAORegistry::getDAO('ArticleDAO'); $article = new Article(); $article->setJournalId($journal->getJournalId()); $article->setUserId($user->getUserId()); $article->setSectionId($section->getSectionId()); $article->setStatus(STATUS_PUBLISHED); $article->setSubmissionProgress(0); $article->setDateSubmitted(Core::getCurrentDate()); $article->stampStatusModified(); $titleExists = false; for ($index = 0; $node = $articleNode->getChildByName('title', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleTitleLocaleUnsupported', array('articleTitle' => $node->getValue(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setTitle($node->getValue(), $locale); $titleExists = true; } if (!$titleExists || $article->getTitle($journalPrimaryLocale) == "") { $errors[] = array('plugins.importexport.native.import.error.articleTitleMissing', array('issueTitle' => $issue->getIssueIdentification(), 'sectionTitle' => $section->getSectionTitle())); return false; } for ($index = 0; $node = $articleNode->getChildByName('abstract', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleAbstractLocaleUnsupported', array('articleTitle' => $article->getArticleTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setAbstract($node->getValue(), $locale); } if ($indexingNode = $articleNode->getChildByName('indexing')) { for ($index = 0; $node = $indexingNode->getChildByName('discipline', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleDisciplineLocaleUnsupported', array('articleTitle' => $article->getArticleTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setDiscipline($node->getValue(), $locale); } for ($index = 0; $node = $indexingNode->getChildByName('type', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleTypeLocaleUnsupported', array('articleTitle' => $article->getArticleTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setType($node->getValue(), $locale); } for ($index = 0; $node = $indexingNode->getChildByName('subject', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleSubjectLocaleUnsupported', array('articleTitle' => $article->getArticleTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setSubject($node->getValue(), $locale); } for ($index = 0; $node = $indexingNode->getChildByName('subject_class', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleSubjectClassLocaleUnsupported', array('articleTitle' => $article->getArticleTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setSubjectClass($node->getValue(), $locale); } if ($coverageNode = $indexingNode->getChildByName('coverage')) { for ($index = 0; $node = $coverageNode->getChildByName('geographical', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleCoverageGeoLocaleUnsupported', array('articleTitle' => $article->getArticleTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setCoverageGeo($node->getValue(), $locale); } for ($index = 0; $node = $coverageNode->getChildByName('chronological', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleCoverageChronLocaleUnsupported', array('articleTitle' => $article->getArticleTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setCoverageChron($node->getValue(), $locale); } for ($index = 0; $node = $coverageNode->getChildByName('sample', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleCoverageSampleLocaleUnsupported', array('articleTitle' => $article->getArticleTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setCoverageSample($node->getValue(), $locale); } } } for ($index = 0; $node = $articleNode->getChildByName('sponsor', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleSponsorLocaleUnsupported', array('articleTitle' => $article->getArticleTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setSponsor($node->getValue(), $locale); } if ($node = $articleNode->getChildByName('pages')) { $article->setPages($node->getValue()); } if ($language = $articleNode->getAttribute('language')) { $article->setLanguage($language); } /* --- Handle authors --- */ $hasErrors = false; for ($index = 0; $node = $articleNode->getChildByName('author', $index); $index++) { if (!NativeImportDom::handleAuthorNode($journal, $node, $issue, $section, $article, $authorErrors)) { $errors = array_merge($errors, $authorErrors); $hasErrors = true; } } if ($hasErrors) { return false; } $articleDao->insertArticle($article); $dependentItems[] = array('article', $article); // Create submission mangement records $copyeditorSubmissionDao =& DAORegistry::getDAO('CopyeditorSubmissionDAO'); $copyeditorSubmission =& new CopyeditorSubmission(); $copyeditorSubmission->setArticleId($article->getArticleId()); $copyeditorSubmission->setCopyeditorId(0); $copyeditorSubmissionDao->insertCopyeditorSubmission($copyeditorSubmission); $layoutDao =& DAORegistry::getDAO('LayoutAssignmentDAO'); $layoutAssignment =& new LayoutAssignment(); $layoutAssignment->setArticleId($article->getArticleId()); $layoutAssignment->setEditorId(0); $layoutAssignment->setDateAcknowledged(Core::getCurrentDate()); // Make sure that imported articles go directly into the Archive. FIXME? $layoutDao->insertLayoutAssignment($layoutAssignment); $proofAssignmentDao =& DAORegistry::getDAO('ProofAssignmentDAO'); $proofAssignment =& new ProofAssignment(); $proofAssignment->setArticleId($article->getArticleId()); $proofAssignment->setProofreaderId(0); $proofAssignmentDao->insertProofAssignment($proofAssignment); // Log the import in the article event log. import('article.log.ArticleLog'); import('article.log.ArticleEventLogEntry'); ArticleLog::logEvent($article->getArticleId(), ARTICLE_LOG_ARTICLE_IMPORT, ARTICLE_LOG_TYPE_DEFAULT, 0, 'log.imported', array('userName' => $user->getFullName(), 'articleId' => $article->getArticleId())); // Insert published article entry. $publishedArticle =& new PublishedArticle(); $publishedArticle->setArticleId($article->getArticleId()); $publishedArticle->setIssueId($issue->getIssueId()); if ($node = $articleNode->getChildByName('date_published')) { $publishedDate = strtotime($node->getValue()); if ($publishedDate === -1) { $errors[] = array('plugins.importexport.native.import.error.invalidDate', array('value' => $node->getValue())); return false; } else { $publishedArticle->setDatePublished($publishedDate); } } $node = $articleNode->getChildByName('open_access'); $publishedArticle->setAccessStatus($node ? 1 : 0); $publishedArticle->setSeq(REALLY_BIG_NUMBER); $publishedArticle->setViews(0); $publishedArticle->setPublicArticleId($articleNode->getAttribute('public_id')); $publishedArticle->setPubId($publishedArticleDao->insertPublishedArticle($publishedArticle)); $publishedArticleDao->resequencePublishedArticles($section->getSectionId(), $issue->getIssueId()); /* --- Galleys (html or otherwise handled simultaneously) --- */ import('file.ArticleFileManager'); $articleFileManager =& new ArticleFileManager($article->getArticleId()); /* --- Handle galleys --- */ $hasErrors = false; $galleyCount = 0; for ($index = 0; $index < count($articleNode->children); $index++) { $node =& $articleNode->children[$index]; if ($node->getName() == 'htmlgalley') { $isHtml = true; } elseif ($node->getName() == 'galley') { $isHtml = false; } else { continue; } if (!NativeImportDom::handleGalleyNode($journal, $node, $issue, $section, $article, $galleyErrors, $isCommandLine, $isHtml, $galleyCount, $articleFileManager)) { $errors = array_merge($errors, $galleyErrors); $hasErrors = true; } $galleyCount++; } if ($hasErrors) { return false; } /* --- Handle supplemental files --- */ $hasErrors = false; for ($index = 0; $node = $articleNode->getChildByName('supplemental_file', $index); $index++) { if (!NativeImportDom::handleSuppFileNode($journal, $node, $issue, $section, $article, $suppFileErrors, $isCommandLine, $articleFileManager)) { $errors = array_merge($errors, $suppFileErrors); $hasErrors = true; } } if ($hasErrors) { return false; } // Index the inserted article. import('search.ArticleSearchIndex'); ArticleSearchIndex::indexArticleMetadata($article); ArticleSearchIndex::indexArticleFiles($article); return true; }