function includeAllData($pack)
{
extract($pack);
$element2query = $element2query == '' ? $s3ql['from'] : $element2query;
#echo '<pre>';print_r($data);exit;
$letter = letter($element2query);
$element = $GLOBALS['s3codes'][$letter];
if ($user_id != '1') {
if (count($data) >= 4) {
if (!ereg('^U|^G', $letter)) {
$Z = compact('user_id', 'db', 'uidQuery', 'timer', 'WhereInfo', 'shared_with_query');
$Z['toFind'] = $letter;
$Z['shared_with_user'] = '******' . $user_id;
$ids = permissionPropagation($Z);
}
}
}
if (ereg('^U|^G', $letter) && $WhereInfo) {
$whereId = array_keys($WhereInfo);
if (count($whereId) > 1) {
$array = array();
return $array;
} else {
$whereId = $whereId[0];
#Tlist provides the list of resources that are shared with the uid of interest, including users & groups
$Hlist = bottom_up_propagation_list($whereId, $db);
$Tlist = user_included_bottom_up_propagation_list('U', $whereId, $user_id, $db);
$resourceUsers = s3dbPercolate($Hlist, $Tlist, $letter);
if ($_REQUEST['su3d']) {
}
}
}
##Remove from data the uids that do not exist in ids
$str = $GLOBALS['s3ids'][$GLOBALS['s3codes'][$letter]];
$re_issued = array();
if (is_array($data)) {
foreach ($data as $ind => $array) {
$uid = $letter . $array[$str];
if ($uid != '') {
if ($user_id != '1') {
if (is_array($ids)) {
if (!ereg('^U|^G', $letter)) {
if ($ids[$uid] != '') {
$array['acl'] = $ids[$uid];
} else {
$array = array();
}
} else {
if ($resourceUsers) {
if (in_array($uid, array_keys($resourceUsers))) {
$array['permissionOnResource'] = $resourceUsers[$uid];
} else {
$array = array();
}
}
#else {
# $array=array();
#}
}
} else {
$strictuid = 1;
$strictsharedwith = 1;
$shared_with = 'U' . $user_id;
$P = compact('uid', 'shared_with', 'user_id', 'db', 'strictuid', 'strictsharedwith', 'stream', 'timer');
if (!ereg('^U|^G', $letter)) {
$array['acl'] = permission4Resource($P);
$array['permission_level'] = $array['acl'];
$permission2user = permissionModelComp($array['permission_level']);
$isOwner = $array['created_by'] == $user_id;
$array['view'] = allowed($permission2user, 0, $isOwner);
$array['change'] = allowed($permission2user, 1, $isOwner);
$array['propagate'] = allowed($permission2user, 2, $isOwner);
#create the element "delete", in case it is eventually created...For now it is the same as change
$array['delete'] = $array['change'];
$array['add_data'] = $array['propagate'];
$array['delete_data'] = $array['add_data'];
} else {
if ($resourceUsers) {
if (in_array($uid, array_keys($resourceUsers))) {
$array['permissionOnResource'] = $resourceUsers[$uid];
} else {
$array = array();
}
}
#else {
# $array=array();
#}
}
}
} else {
$array['acl'] = 'yyy';
if (ereg('^U|^G', $letter) && $resourceUsers) {
if ($resourceUsers) {
if (in_array($uid, array_keys($resourceUsers))) {
$array['permissionOnResource'] = $resourceUsers[$uid];
} else {
$array = array();
}
}
#else {
# $array=array();
#}
}
}
}
if (!empty($array)) {
$re_issued[$uid] = $array;
$element_info = $re_issued[$uid];
$info = $WhereInfo;
$C = compact('letter', 'info', 'elements', 'element_info', 'user_id', 'db', 'key', 'timer', 'model');
$element_info = include_all($C);
$element_info['uri'] = S3DB_URI_BASE . '/' . $letter . $array[$str];
#$element_info['uri'] = str_replace('central', 'TCGA', S3DB_URI_BASE.'/'.$letter.$array[$str]);
$pack['uid'] = $uid;
$pack['info'] = $element_info;
$element_info = filterDataForQuery($pack);
if ($timer) {
$timer->setMarker('Filter Data For The Query');
}
$re_issued[$uid] = $element_info;
}
}
}
$data = array_values(array_filter($re_issued));
return $data;
}
function permissionPropagation($Z)
{
#NEW NEW
extract($Z);
$model = 'nsy';
##Seems to be working; requires further testing
##This vector is an indication of what propagates from the user
$X = user_centric_propagation_list($user_id, $db);
##If $X includes roles, percolate the user allowed list to those roles
if (is_array($X)) {
foreach ($X as $X_uid => $X_pl) {
if (substr($X_uid, 0, 1) == 'U') {
$role = substr($X_uid, 1, strlen($X_uid));
$roles[] = role_propagation_list($role, $db, $X_pl);
}
}
}
##Now merge all the roles into X
if (is_array($roles)) {
foreach ($roles as $r => $role_X) {
foreach ($role_X as $uid1 => $pl1) {
if ($X[$uid1]) {
$tmp = s3dbMerge(array($X[$uid1], $pl1));
$X[$uid1] = $tmp;
} else {
$X[$uid1] = $pl1;
}
}
}
}
##FIRST: Colect every relation from the permissions table
#According to the amount of data that needs to be discovered to build the matrix, the bottom up, top-down,or middle point approach will be selected.
if ($toFind != letter($toFind)) {
$Hlist = bottom_up_propagation_list($toFind, $db, $X);
} elseif ($toFind == letter($toFind) && !$shared_with_query) {
$X = user_centric_propagation_list($user_id, $db);
#Find the initial propagation list by finding all of the resources in the class of the requested resource
if (is_array($X)) {
$starter = array_keys($X);
}
$Hlist = top_down_propagation_list($toFind, $starter, $db, $toFindInfo);
} elseif ($shared_with_query) {
#when a uid is specified, propagation will only occur form that point onwards
$Hlist = array();
foreach ($shared_with_query as $up) {
$Hlist = bottom_up_propagation_list($up, $db, $X, $Hlist);
}
$Hlist = top_down_propagation_list($toFind, $shared_with_query, $db, $Hlist);
}
#now find the vector that will be used to propagate the permissions: the one captured from downtream finding permissions the user may have;
#if(is_array($Hlist))
if (is_array($X)) {
#convert pl to the right model
$model_p = str_split($model);
foreach ($X as $key_id => $key_pl) {
$X[$key_id] = str_ireplace(array('0', '1', '2'), $model_p, $key_pl);
}
if (is_array($X) && is_array($Hlist)) {
$result = s3dbPercolate($Hlist, $X, $toFind, $result = array(), $u = 1, $state = 3, $model);
}
} else {
$result = $X;
}
if (is_array($result)) {
if ($model == '012') {
foreach ($result as $a => $b) {
$result[$a] = str_ireplace(array('n', 's', 'y'), array('0', '1', '2'), $b);
}
} elseif ($model == 'nsy') {
foreach ($result as $a => $b) {
$result[$a] = str_ireplace(array('0', '1', '2'), array('n', 's', 'y'), $b);
}
}
}
if ($timer) {
$timer->setMarker('Permissions percolated for ' . $toFind);
}
#$timer->display();
return $result;
}