function DisplayHtmlContent()
{
global $config;
echo html_page_header(true, '', 'name');
echo '<h1>' . $this->GetTitle() . '</h1>';
echo '<h2>Identifiers</h2>';
echo '<ul>';
if ($this->object->NameBankID != 0) {
echo '<li>' . 'urn:lsid:ubio.org:namebank:' . $this->object->NameBankID . '</li>';
}
echo '</ul>';
// Taxon name (nomenclators)
$acts = acts_for_namestring($this->GetTitle());
$act_refs = references_for_acts_for_namestring($this->GetTitle());
if (count($acts) > 0) {
echo '<h2>Taxonomic names</h2>';
echo '<ul>';
foreach ($acts as $tn) {
echo '<li>' . $tn->global_id . '</li>';
}
echo '</ul>';
}
$col = col_accepted_name_for($this->GetTitle());
if (isset($col->name)) {
echo '<h2>Catalogue of Life accepted name</h2>' . "\n";
echo '<p>';
echo '<span><a href="' . $config['web_root'] . 'name/' . $col->name . '">' . $col->name . '</a>' . ' ' . $col->author . '</span>';
echo '</p>' . "\n";
// Synonyms
$col_synonyms = col_synonyms_for_namecode($col->name_code);
if (count($col_synonyms) != 0) {
echo '<h3>Synonyms</h3>' . "\n";
echo '<ul>' . "\n";
foreach ($col_synonyms as $s) {
echo '<li><a href="' . $config['web_root'] . 'name/' . $s->name . '">' . $s->name . '</a> ' . $s->author . '</li>' . "\n";
}
echo '</ul>' . "\n";
}
}
if (1) {
/*
// What pages have this name? (BHL timeline)
$hits = bhl_name_search($this->object->NameBankID);
if (count($hits) > 0)
{
echo '<h2>BHL</h2>' . "\n";
echo '<h3>Distribution of name in BHL</h3>';
echo '<div>' . "\n";
echo ' <img src="' . sparkline_bhl_name($hits, 360,100) . '" alt="sparkline" />' . "\n";
echo '</div>' . "\n";
}
else
{
//echo '<p>Name not found in BHL</p>';
}
*/
// What articles have this name?
echo '<hr />';
echo '<h2>References in BioStor</h2>';
// echo '<p><img src="/images/star.png"> indicates reference that publishes a "nomenclatural act", such as publishing the name.</p>';
echo '<div>';
echo '<div style="display:inline;border:1px solid rgb(192,192,192);background-color:#D8F3C9;width:20px;height:20px;"> </div>';
echo ' Reference contains nomenclatural act, such as publishing the name';
echo '</div>';
echo '<p />';
// Find using BHL bhl_page_name index
//$refs = bhl_references_with_name($this->object->NameBankID);
$refs = bhl_references_with_namestring($this->GetTitle());
// Merge with references from nomenclators
$refs = array_merge($refs, $act_refs);
$refs = array_unique($refs);
//print_r($refs);
if (count($refs) == 0) {
echo '<p>[No references]</p>';
}
/*
echo '<ul class="reference-list">';
foreach($refs as $reference_id)
{
$reference = db_retrieve_reference ($reference_id);
echo '<li ';
if (in_array($reference_id, $act_refs))
{
echo 'class="act"';
}
else
{
echo 'class="default"';
}
echo '>';
echo '<a href="' . $config['web_root'] . 'reference/' . $reference_id . '">' . $reference->title . '</a><br/>';
echo '<span style="color:green;">' . reference_authors_to_text_string($reference);
if (isset($reference->year))
{
echo ' (' . $reference->year . ')';
}
echo ' ' . reference_to_citation_text_string($reference) . '</span>';
echo ' ' . reference_to_coins($reference);
if (0)
{
echo '<div>';
echo bhl_pages_with_name_thumbnails($reference_id,$this->object->NameBankID);
echo '</div>';
}
echo '</li>';
}
echo '</ul>';
*/
echo '<table cellspacing="0" cellpadding="2" width="100%">';
foreach ($refs as $reference_id) {
$reference = db_retrieve_reference($reference_id);
echo '<tr';
if (in_array($reference_id, $act_refs)) {
echo ' style="background-color:#D8F3C9;"';
}
echo '>';
if ($reference->PageID != 0) {
$image = bhl_fetch_page_image($reference->PageID);
$imageURL = $image->thumbnail->url;
} else {
// if it's an article we could use journal image
$imageURL = 'http://bioguid.info/issn/image.php?issn=' . $reference->issn;
}
echo '<td valign="top"><img style="border:1px solid rgb(192,192,192);" src="' . $imageURL . '" width="40" />';
echo '</td>';
echo '<td valign="top">';
echo '<a href="' . $config['web_root'] . 'reference/' . $reference_id . '">' . $reference->title . '</a><br/>';
echo '<span>' . reference_authors_to_text_string($reference);
if (isset($reference->year)) {
echo ' (' . $reference->year . ')';
}
echo ' ' . reference_to_citation_text_string($reference) . '</span>';
echo ' ' . reference_to_coins($reference);
if (0) {
echo '<div>';
echo bhl_pages_with_name_thumbnails($reference_id, $this->object->NameBankID);
echo '</div>';
}
echo '</td>';
echo '</tr>';
}
echo '</table>';
/*
$refs = col_references_for_name($this->GetTitle());
if (count($refs) != 0)
{
echo '<h2>Catalogue of Life Bibliography</h2>';
echo '<ol>';
foreach($refs as $ref)
{
echo '<li style="border-bottom:1px dotted rgb(128,128,128);padding:4px;">';
echo '<span>';
echo '[' . $ref->record_id . '] ';
if (isset($ref->reference_type))
{
echo '[' . $ref->reference_type . '] ';
}
echo $ref->author;
echo ' ';
echo $ref->year;
echo ' ';
echo $ref->title;
echo '. ';
echo $ref->source;
echo '</span>';
echo '</li>';
}
echo '</ol>';
}
*/
}
}
function DisplayHtmlContent()
{
global $config;
echo html_page_header(true, '', 'name');
echo '<h1>' . $this->GetTitle() . '</h1>';
if (count($this->object->specimens) == 0) {
echo '<p>No specimens with this code</p>';
} else {
// What articles have this specimen?
echo '<h2>References in BioStor with this specimen</h2>';
$refs = specimens_references_with_code($this->code);
//print_r($refs);
foreach ($refs as $occurrenceID => $ref_list) {
if ($occurrenceID != 0) {
echo '<p>GBIF occurrence <a class="gbif" href="http://data.gbif.org/occurrences/' . $occurrenceID . '/" target="_new">' . $occurrenceID . '</a>';
$datasetID = specimens_dataset_from_occurrence($occurrenceID);
$dataset = specimens_dataset($datasetID);
echo ' from dataset <a href="gbif_dataset.php?datasetID=' . $dataset->datasetID . '">' . $dataset->dataResourceName . ' (' . $dataset->providerName . ')' . '</a>';
echo '</p>';
$occurrence = specimens_from_occurrenceID($occurrenceID);
echo '<p>' . $occurrence->scientificName . ' (' . join(':', $occurrence->lineage) . ')' . '</p>';
} else {
echo '<p>(specimen not known in GBIF)</p>';
}
echo '<table cellspacing="0" cellpadding="2" width="100%">';
foreach ($ref_list as $reference_id) {
$reference = db_retrieve_reference($reference_id);
echo '<tr';
if (in_array($reference_id, $act_refs)) {
echo ' style="background-color:#D8F3C9;"';
}
echo '>';
if ($reference->PageID != 0) {
$image = bhl_fetch_page_image($reference->PageID);
$imageURL = $image->thumbnail->url;
} else {
// if it's an article we could use journal image
$imageURL = 'http://bioguid.info/issn/image.php?issn=' . $reference->issn;
}
echo '<td valign="top"><img style="border:1px solid rgb(192,192,192);" src="' . $imageURL . '" width="40" />';
echo '</td>';
echo '<td valign="top">';
echo '<a href="' . $config['web_root'] . 'reference/' . $reference_id . '">' . $reference->title . '</a><br/>';
echo '<span>' . reference_authors_to_text_string($reference);
if (isset($reference->year)) {
echo ' (' . $reference->year . ')';
}
echo ' ' . reference_to_citation_text_string($reference) . '</span>';
echo ' ' . reference_to_coins($reference);
if (0) {
echo '<div>';
echo bhl_pages_with_name_thumbnails($reference_id, $this->object->NameBankID);
echo '</div>';
}
echo '</td>';
echo '</tr>';
}
echo '</table>';
}
}
}
$image = bhl_fetch_page_image($reference->PageID);
$imageURL = $image->thumbnail->url;
} else {
// if it's an article we could use journal image
$imageURL = 'http://bioguid.info/issn/image.php?issn=' . $reference->issn;
}
echo '<td valign="top"><img style="border:1px solid rgb(192,192,192);" src="' . $imageURL . '" width="40" />';
echo '</td>';
echo '<td valign="top">';
echo '<a href="' . $config['web_root'] . 'reference/' . $reference_id . '">' . $reference->title . '</a><br/>';
echo '<span>' . reference_authors_to_text_string($reference);
if (isset($reference->year)) {
echo ' (' . $reference->year . ')';
}
echo ' ' . reference_to_citation_text_string($reference) . '</span>';
echo ' ' . reference_to_coins($reference);
if (0) {
echo '<div>';
echo bhl_pages_with_name_thumbnails($reference_id, $this->object->NameBankID);
echo '</div>';
}
echo '</td>';
echo '</tr>';
}
echo '</table>';
echo html_body_close(true);
// true to show Disqus comments
echo html_html_close();
?>
