public function doUpdate($title, $wikiText)
{
list($wikiText, $annotations) = AnnotationParser::reformatWikiText($wikiText);
list($wikiText, $axioms) = AxiomParser::reformatWikiText($this->ontology->getOntAbbr(), $wikiText);
list($wikiText, $supClasses) = HierarchyParser::reformatWikiText($this->ontology->getOntAbbr(), $wikiText);
$this->updateAnnotations($annotations);
$this->updateSubClassOf($supClasses, $axioms['subclassof']);
$this->updateEquivalent($axioms['equivalent']);
list($wikiText, $common) = CommonParser::reformatWikiText($wikiText);
if (array_key_exists('label', $common)) {
$this->updateLabel($common['label']);
}
return $wikiText;
}
protected function doSave()
{
global $wgUser;
$action = $this;
$article = $this->page;
$title = $article->getTitle();
$output = $action->getOutput();
$titleArray = explode(':', $title->getText());
$ontAbbr = $titleArray[0];
$termID = str_replace(' ', '_', $titleArray[1]);
$update = new OntologyUpdate($ontAbbr, $termID);
if ($title->exists()) {
$wikiText = $article->getPage()->getContent()->getWikitextForTransclusion();
} else {
$wikiText = '';
}
/*
if ( $title->exists() ) {
if ( $this->perm >= self::ONTOLOGY_MANAGER ) {
#$update->updateSubClassOf( $this->options['subclassof'] );
} else if ( $this->perm == self::ONTOLOGY_MASTER ) {
$update->updateIRI( $this->options['term-iri'] );
$update->updateType( $this->options['term-type'] );
}
} else {
if ( $this->perm >= self::ONTOLOGY_PUBLIC ) {
#$update->updateSubClassOf( $this->options['subclassof'] );
$update->updateType( $this->options['term-type'] );
}
}
$update->updateLabel( $this->options['term-label'] );
if ( key_exists( 'annotation-type', $this->options ) && key_exists( 'annotation-text', $this->options ) ) {
$newWikiText = ActionHelper::changeOntologyAnnotation( $oldWikiText,
$this->options['annotation-type'],
$this->options['annotation-text']
);
}
*/
if ($this->perm >= self::ONTOLOGY_USER) {
if ($this->perm == self::ONTOLOGY_MASTER) {
if ($title->exists()) {
$update->updateIRI($this->options['term-iri']);
$update->updateType($this->options['term-type']);
} else {
$update->updateType($this->options['term-type']);
}
wfDebugLog('OntoKiWi', sprintf('OKW\\Action\\FormEditAction: %s is allowed {ontology_master}: updated restricted information about the term [[%s]]', $wgUser->getName(), $title->getText()));
}
$common['label'] = $this->options['term-label'];
list($wikiText, $common) = CommonParser::reformatWikiText($wikiText, $common);
wfDebugLog('OntoKiWi', sprintf('OKW\\Action\\FormEditAction: reformatted common information wikitext of the term [[%s]]', $title->getText()));
$update->updateLabel($common['label']);
wfDebugLog('OntoKiWi', sprintf('OKW\\Action\\FormEditAction: updated common information about the term [[%s]]', $title->getText()));
if (array_key_exists('annotation-type', $this->options) && array_key_exists('annotation-text', $this->options)) {
if (sizeof($this->options['annotation-type']) != sizeof($this->options['annotation-text'])) {
#TODO: Throw Exception
}
$sql = new SQLStore(wfGetDB(DB_SLAVE));
$magic = $sql->getAnnotationMagicWords();
$annotations = array();
foreach ($this->options['annotation-type'] as $index => $name) {
$iri = $magic[$name]['iri'];
$text = $this->options['annotation-text'][$index];
$annotations[$iri][] = $text;
}
list($wikiText, $annotations) = AnnotationParser::reformatWikiText($wikiText, $annotations);
wfDebugLog('OntoKiWi', sprintf('OKW\\Action\\FormEditAction: reformatted annotation wikitext of the term [[%s]]', $title->getText()));
$update->updateAnnotations($annotations);
wfDebugLog('OntoKiWi', sprintf('OKW\\Action\\FormEditAction: updated annotation of the term [[%s]]', $title->getText()));
}
if (array_key_exists('subclassof', $this->options)) {
list($wikiText, $supClasses) = HierarchyParser::reformatWikiText($ontAbbr, $wikiText, $this->options['subclassof']);
wfDebugLog('OntoKiWi', sprintf('OKW\\Action\\FormEditAction: reformatted hierarchy wikitext of the term [[%s]]', $title->getText()));
}
if (array_key_exists('axiom-type', $this->options) && array_key_exists('axiom-text', $this->options)) {
if (sizeof($this->options['axiom-type']) != sizeof($this->options['axiom-text'])) {
#TODO: Throw Exception
}
$axioms = array();
foreach ($this->options['axiom-type'] as $index => $type) {
$axioms[$index]['type'] = $type;
$axioms[$index]['text'] = $this->options['axiom-text'][$index];
}
list($wikiText, $axioms) = AxiomParser::reformatWikiText($ontAbbr, $wikiText, $axioms);
wfDebugLog('OntoKiWi', sprintf('OKW\\Action\\FormEditAction: reformatted axiom wikitext of the term [[%s]]', $title->getText()));
}
$update->updateSubClassOf($supClasses, $axioms['subclassof']);
wfDebugLog('OntoKiWi', sprintf('OKW\\Action\\FormEditAction: updated hierarchy of the term [[%s]]', $title->getText()));
#TODO: Equivalent update
wfDebugLog('OntoKiWi', sprintf('OKW\\Action\\FormEditAction: updated axiom of the term [[%s]]', $title->getText()));
}
$editor = $this->setupEditPage($wikiText);
return $this->doMWStore($output, $title, $editor);
}
private function importOntology()
{
$tmp = sys_get_temp_dir() . '/OntoKiWiQueue/';
if (file_exists($tmp)) {
$this->recursiveRemoveDirectory($tmp);
}
mkdir($tmp);
if (array_key_exists('OntoKiWi', $GLOBALS['wgDebugLogGroups'])) {
$log = $GLOBALS['wgDebugLogGroups']['OntoKiWi'];
} else {
if ($GLOBALS['wgDebugLogFile'] && $GLOBALS['wgDebugLogFile'] != '') {
$log = $GLOBALS['wgDebugLogFile'];
} else {
$log = sys_get_temp_dir() . '/mediawikiimportfromtext.log';
}
}
$request = $this->getRequest();
$options = $request->getValues();
$ontAbbr = $options['ontology_abbrv'];
$graph = $options['ontology_graph_url'];
$fullname = $options['ontology_fullname'];
$id = strtolower($ontAbbr);
$sql = new SQLStore(wfGetDB(DB_MASTER));
$status = $sql->insertOntology($id, $options);
if ($status) {
wfDebugLog('OntoKiWi', sprintf('OKW\\Special\\ImportOntology: valid ontology: queued pages will be stored in $s', $tmp));
$ontology = new OntologyData($ontAbbr);
$rdf = $ontology->getRDF();
$this->importObjectProperty($id, $options, $sql, $rdf, $graph);
$this->importAnnotationProperty($id, $options, $sql, $rdf, $graph);
$ontID = $sql->getOntologyID($ontAbbr);
$annotationMagic = $sql->getAnnotationMagicWords($ontID);
$objectMagic = $sql->getObjectMagicWords($ontID);
$objects = array();
foreach ($objectMagic as $magic => $object) {
$objects[$magic] = $magic;
$objects[$object['iri']] = $magic;
$objects[$object['id']] = $magic;
}
$operations = array();
foreach ($GLOBALS['okwRDFConfig']['restriction']['operation'] as $operation => $operationIRI) {
$operations[$operationIRI] = $operation;
$operations[$operation] = $operation;
}
$types = array();
foreach ($GLOBALS['okwRDFConfig']['restriction']['type'] as $type => $typeIRI) {
$types[$typeIRI] = $type;
$types[$type] = $type;
}
$count = $rdf->countAllClass($graph);
if ($count >= 10000) {
$source = file_get_contents($options['source']);
preg_match_all('/xmlns:([\\w]*)[\\s]?=[\\s]?"([^"]*)"[\\s]?/', $source, $matches, PREG_SET_ORDER);
$prefix = array();
foreach ($matches as $match) {
$prefix[$match[1]] = $match[2];
}
if (preg_match_all('/[\\s]?<owl:Class[\\s]?rdf:about[\\s]?=[\\s]?"(&([\\w]*);)?([^"]*)"[\\s]?[\\/]?>/', $source, $matches, PREG_SET_ORDER)) {
$classes = array();
foreach ($matches as $match) {
if ($match[1] != '' && $match[2] != '') {
$classes[] = $prefix[$match[2]] . $match[3];
} else {
$classes[] = $match[3];
}
}
} else {
$sql->deleteOntology($id);
return array(self::EXCESSIVE_CLASS, null);
}
} else {
if ($count == 0) {
$sql->deleteOntology($id);
return array(self::NO_CLASS_FOUND, null);
} else {
$classes = $rdf->getAllClass($graph);
}
}
$filename = "Category:{$ontAbbr}";
file_put_contents($tmp . $filename, $fullname);
$output = array();
foreach ($classes as $index => $class) {
if ($class == $GLOBALS['okwRDFConfig']['Thing']) {
continue;
}
$term = $ontology->parseTermByIRI($class);
$id = $term->id;
$filename = "{$ontAbbr}:{$id}";
if (!OntologyValidator::isValidTitleText($filename)) {
throw new MWException("Unable to process term: {$id}. Please check the correctness of the Ontology");
}
$related = $ontology->parseTermRelated($term);
$wikiText = "[[Category:{$ontAbbr}]]";
$title = Title::newFromText($filename);
if ($title->exists()) {
continue;
}
$output[$class] = $term->label . " ({$ontAbbr}:{$id})";
$annotations = array();
foreach ($annotationMagic as $name => $value) {
if (array_key_exists($value['iri'], $related)) {
$annotations[$value['iri']] = $rdf->getObject($graph, $term->iri, $value['iri']);
}
}
list($wikiText, $annotations) = AnnotationParser::reformatWikiText($wikiText, $annotations);
$axiomData = $rdf->getAxiom($graph, $term->iri);
$axioms = array();
foreach ($axiomData['subclassof'] as $data) {
$axiom = array();
$axiom['type'] = 'subclassof';
$axiom['text'] = ManchesterSyntaxHandler::writeRecursiveManchester($data, array_merge($objects, $operations, $types));
$axioms[] = $axiom;
}
foreach ($axiomData['equivalent'] as $data) {
$axiom = array();
$axiom['type'] = 'equivalent';
$axiom['text'] = ManchesterSyntaxHandler::writeRecursiveManchester($data, array_merge($objects, $operations, $types));
$axioms[] = $axiom;
}
list($wikiText, $axioms) = AxiomParser::reformatWikiText($ontAbbr, $wikiText, $axioms, true);
$supClasses = array_keys($rdf->getSupClass($graph, $term->iri));
if (empty($supClasses)) {
$supClasses = array($GLOBALS['okwRDFConfig']['Thing']);
}
list($wikiText, $supClasses) = HierarchyParser::reformatWikiText($ontAbbr, $wikiText, $supClasses);
$common['label'] = $term->label;
list($wikiText, $common) = CommonParser::reformatWikiText($wikiText, $common);
file_put_contents($tmp . $filename, $wikiText);
}
wfDebugLog('OntoKiWi', 'OKW\\Special\\ImportOntology: ontology SPARQL query completes, pages will be created using maintenance scripts in the background');
$cmd = "( cd {$tmp} && for file in *; do php " . $GLOBALS['IP'] . "/maintenance/edit.php -u bot \$file < \$file; done && rm -R /tmp/OntoKiWiQueue ) > {$log} 2>&1 &";
exec($cmd, $output, $return);
return array(self::SUCCESS, $output);
} else {
return array(self::INVALID_SPARQL, null);
}
}
