Example #1
7
 public function testUselessFileDetectorSendKeys()
 {
     $this->driver->get($this->getTestPath('upload.html'));
     $file_input = $this->driver->findElement(WebDriverBy::id('upload'));
     $file_input->sendKeys($this->getFilePath());
     self::assertEquals($this->getFilePath(), $file_input->getAttribute('value'));
 }
Example #2
4
/**
 * @param $web
 * @param $input_id
 * @param $value
 * @return mixed
 */
function write_in_input(RemoteWebDriver $web, $input_id, $value)
{
    $input = $web->findElement(WebDriverBy::id($input_id));
    $input->click();
    $web->getKeyboard()->sendKeys($value);
    return $input;
}
 public function testAddScreeningToHealthyIndividual()
 {
     // wait for page redirect
     $this->waitUntil(WebDriverExpectedCondition::presenceOfElementLocated(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b")));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/individual\\/00000001$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/screenings[\\s\\S]create&target=00000001$/', $this->driver->getCurrentURL()));
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Template[]"]/option[text()="RNA (cDNA)"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Template[]"]/option[text()="Protein"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Technique[]"]/option[text()="array for Comparative Genomic Hybridisation"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Technique[]"]/option[text()="array for resequencing"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Technique[]"]/option[text()="array for SNP typing"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="genes[]"]/option[text()="IVD (isovaleryl-CoA dehydrogenase)"]'));
     $option->click();
     $this->check(WebDriverBy::name("variants_found"));
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create screening information entry']"));
     $element->click();
     $this->assertEquals("Successfully created the screening entry!", $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText());
 }
 public function testAddSummaryVariantOnlyDescribedOnGenomicLevel()
 {
     // Wait for redirect
     $this->waitUntil(WebDriverExpectedCondition::titleContains("View genomic variant"));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/0000000003$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::id("tab_submit"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*Please reconsider to submit individual data as well, as it makes the data you submit much more valuable![\\s\\S]*$/', $this->getConfirmation()));
     $this->chooseOkOnNextConfirmation();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&reference=Genome$/', $this->driver->getCurrentURL()));
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Paternal (confirmed)"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="chromosome"]/option[text()="15"]'));
     $option->click();
     $this->enterValue(WebDriverBy::name("VariantOnGenome/DNA"), "g.40702976G>T");
     $element = $this->driver->findElement(WebDriverBy::linkText("PubMed"));
     $element->click();
     // Move mouse to let browser hide tooltip of pubmed link (needed for chrome)
     $this->driver->getMouse()->mouseMove(null, 200, 200);
     $this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
     $this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
 }
Example #5
4
 public function testTestReadOnlyState()
 {
     // Test that LOVD is in the read-only state.
     // First, log out of any session that might exist at this time.
     $this->logout();
     // There should be no link to register yourself.
     // First, I had this findElements(), but Chrome doesn't like that at all, and times out.
     // Firefox anyway took quite some time, because of the timeout that we have set if elements are not found immediately (normally needed if pages load slowly).
     // $this->assertFalse((bool) count($this->driver->findElements(WebDriverBy::xpath('//a/b[text()="Register as submitter"]'))));
     // New attempt to test for absence of register link.
     $this->assertFalse(strpos($this->driver->findElement(WebDriverBy::xpath('//table[@class="logo"]//td[3]'))->getText(), 'Register as submitter'));
     $this->driver->get(ROOT_URL . '/src/login');
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/login$/', $this->driver->getCurrentURL()));
     // Verify warning exists. Finds any TD with this text.
     $this->driver->findElement(WebDriverBy::xpath('//td[text()="This installation is currently configured to be read-only. Only Managers and higher level users can log in."]'));
     // Attempt to log in, should fail in a specific way.
     $this->enterValue(WebDriverBy::name('username'), 'submitter');
     $this->enterValue(WebDriverBy::name('password'), 'test1234');
     $element = $this->driver->findElement(WebDriverBy::xpath('//input[@value="Log in"]'));
     $element->click();
     // Should return a proper error message.
     $this->assertEquals('This installation is currently configured to be read-only. Your user level is not sufficient to log in.', $this->driver->findElement(WebDriverBy::cssSelector('div[class=err]'))->getText());
     // Also curators should fail.
     $this->enterValue(WebDriverBy::name('username'), 'curator');
     $this->enterValue(WebDriverBy::name('password'), 'test1234');
     $element = $this->driver->findElement(WebDriverBy::xpath('//input[@value="Log in"]'));
     $element->click();
     // Should return a proper error message.
     $this->assertEquals('This installation is currently configured to be read-only. Your user level is not sufficient to log in.', $this->driver->findElement(WebDriverBy::cssSelector('div[class=err]'))->getText());
 }
 public function testPostFinishAddPhenotypeInfoToIVAIndividual()
 {
     $element = $this->driver->findElement(WebDriverBy::id("tab_individuals"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals\\/IVD$/', $this->driver->getCurrentURL()));
     //        $element = $this->driver->findElement(WebDriverBy::cssSelector("#00000002 > td.ordered"));
     $element = $this->driver->findElement(WebDriverBy::xpath("//td[text()='00000002']"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals\\/00000002$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::id("viewentryOptionsButton_Individuals"));
     $element->click();
     $element = $this->driver->findElement(WebDriverBy::linkText("Add phenotype information to individual"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/phenotypes[\\s\\S]create&target=00000002$/', $this->driver->getCurrentURL()));
     $this->enterValue(WebDriverBy::name("Phenotype/Additional"), "Additional phenotype information");
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Phenotype/Inheritance"]/option[text()="Familial"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create phenotype information entry']"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
     // Wait for page redirect.
     $this->waitUntil(WebDriverExpectedCondition::titleContains("View phenotype"));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/phenotypes\\/0000000003$/', $this->driver->getCurrentURL()));
 }
 public function testAddVariantLocatedWithinGeneToCMTIndividual()
 {
     // Wait for redirect
     $this->waitUntil(WebDriverExpectedCondition::titleContains("Submission of"));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000001$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&target=0000000001$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath('//b[contains(., "A variant that is located within a gene")]'));
     $element->click();
     $element = $this->driver->findElement(WebDriverBy::linkText("GJB1"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&reference=Transcript&geneid=GJB1&target=0000000001$/', $this->driver->getCurrentURL()));
     $this->uncheck(WebDriverBy::name("ignore_00000001"));
     $this->enterValue(WebDriverBy::name("00000001_VariantOnTranscript/Exon"), "2");
     $this->enterValue(WebDriverBy::name("00000001_VariantOnTranscript/DNA"), "c.34G>T");
     $element = $this->driver->findElement(WebDriverBy::cssSelector("button.mapVariant"));
     $element->click();
     // Wait until RNA description field is filled after AJAX request.
     $firstRNAInputSelector = '(//input[contains(@name, "VariantOnTranscript/RNA")])[1]';
     $this->waitUntil(function ($driver) use($firstRNAInputSelector) {
         $firstRNAInput = $driver->findElement(WebDriverBy::xpath($firstRNAInputSelector));
         $firstRNAValue = $firstRNAInput->getAttribute('value');
         return !empty($firstRNAValue);
     });
     // Check RNA description for first transcript.
     $firstRNAInput = $this->driver->findElement(WebDriverBy::xpath($firstRNAInputSelector));
     $firstRNAValue = $firstRNAInput->getAttribute('value');
     $this->assertTrue((bool) preg_match('/^r\\.\\([\\s\\S]\\)$/', $firstRNAValue));
     // Check protein description for first transcript.
     $firstProteinInputSelector = '(//input[contains(@name, "VariantOnTranscript/Protein")])[1]';
     $firstProteinInput = $this->driver->findElement(WebDriverBy::xpath($firstProteinInputSelector));
     $firstProteinValue = $firstProteinInput->getAttribute('value');
     $this->assertEquals("p.(Gly12Cys)", $firstProteinValue);
     $GenomicDNAChange = $this->driver->findElement(WebDriverBy::name('VariantOnGenome/DNA'));
     $this->assertEquals("g.70443591G>T", $GenomicDNAChange->getAttribute('value'));
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="00000001_effect_reported"]/option[text()="Effect unknown"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="00000001_effect_concluded"]/option[text()="Effect unknown"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Maternal (confirmed)"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::linkText("PubMed"));
     $element->click();
     // Move mouse to let browser hide tooltip of pubmed link (needed for chrome)
     $this->driver->getMouse()->mouseMove(null, 200, 200);
     $this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
     $this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.003");
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
     $element->click();
     $this->assertEquals("Successfully created the variant entry!", $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText());
 }
 public function testCreateAnnouncementReadOnly()
 {
     // Create an announcement, that switches LOVD into the read-only state.
     // This test assumes you're logged in as manager or admin.
     $sAnnouncement = 'This is a test announcement. LOVD will be closed for registrations, and lower level users can not log in.';
     $this->driver->get(ROOT_URL . '/src/announcements?create');
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/announcements[\\s\\S]create$/', $this->driver->getCurrentURL()));
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="type"]/option[text()="Warning"]'));
     $option->click();
     $this->enterValue(WebDriverBy::name('announcement'), $sAnnouncement);
     $this->enterValue(WebDriverBy::name('start_date'), '');
     // No value, means active from now().
     $this->enterValue(WebDriverBy::name('end_date'), '');
     // No value, means active until '9999-12-31 23:59:59'.
     $this->check(WebDriverBy::name('lovd_read_only'));
     $this->enterValue(WebDriverBy::name('password'), 'test1234');
     $element = $this->driver->findElement(WebDriverBy::xpath('//input[@value="Create announcement"]'));
     $element->click();
     $this->driver->findElement(WebDriverBy::xpath('//td[text()="Successfully created the announcement!"]'));
     // Finds any TD with this text.
     // Also check if announcement is actually visible.
     $this->assertEquals($sAnnouncement, $this->driver->findElement(WebDriverBy::cssSelector('table[class=info]'))->getText());
     // Wait for redirect...
     $this->waitUntil(WebDriverExpectedCondition::titleContains('View announcement'));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/announcements\\/\\d{5}$/', $this->driver->getCurrentURL()));
 }
Example #9
2
 public function testCheckCustomLinks()
 {
     // This test checks some basic functionality of the custom links. It
     // doesn't require authorization, just checks some VLs if the links are
     // rendered correctly.
     // Load the common variant overview.
     $this->driver->get(ROOT_URL . '/src/variants');
     // Find a custom link, and move the mouse over it.
     $oCustomLink = $this->driver->findElement(WebDriverBy::xpath('//table[@class="data"]/tbody/tr/td/span[text()="dbSNP"]'));
     $this->driver->getMouse()->mouseMove($oCustomLink->getCoordinates());
     // Now find the tooltip that should have shown.
     $sToolTipLinkText = $this->driver->findElement(WebDriverBy::xpath('//div[@id="tooltip"]/a'))->getText();
     $this->assertTrue(strpos($sToolTipLinkText, 'http') === 0 && strpos($sToolTipLinkText, 'SNP'));
     // This test data does not have many links, try and find a PubMed link.
     // Load the in_gene view.
     $this->driver->get(ROOT_URL . '/src/variants/in_gene');
     // Filter on Reference, so we can find this link on the first page.
     $sSelector = WebDriverBy::name('search_VariantOnGenome/Reference');
     $this->enterValue($sSelector, 'Fokkema');
     $oElement = $this->driver->findElement($sSelector);
     // Use json_decode to send enter key to browser.
     $oElement->sendKeys(json_decode('"\\uE007"'));
     // FIXME: It would be good if we can test for the VL to renew. Now just waiting a second.
     sleep(1);
     // Find a custom link, and move the mouse over it.
     $oCustomLink = $this->driver->findElement(WebDriverBy::xpath('//table[@class="data"]/tbody/tr/td/span[text()="Fokkema et al (2011)"]'));
     $this->driver->getMouse()->mouseMove($oCustomLink->getCoordinates());
     // Now find the tooltip that should have shown.
     $sToolTipLinkText = $this->driver->findElement(WebDriverBy::xpath('//div[@id="tooltip"]/a'))->getText();
     $this->assertTrue(strpos($sToolTipLinkText, 'http') === 0 && strpos($sToolTipLinkText, 'pubmed'));
 }
Example #10
1
 /**
  * Sub class of RemoteWebDriver. Overloading its findElement method
  * to make use of RefreshingWebDriverElement.
  */
 public function findElement(WebDriverBy $by)
 {
     // This method is similar to RemoteWebDriver::findElement() but
     // returns an instance of RefreshingWebElement.
     $params = array('using' => $by->getMechanism(), 'value' => $by->getValue());
     $raw_element = $this->execute(DriverCommand::FIND_ELEMENT, $params);
     // Create a RefreshingWebElement and set resources needed to let the
     // element refresh in the future.
     $element = new RefreshingWebElement($this->getExecuteMethod(), $raw_element['ELEMENT']);
     $element->setLocator($by);
     $element->setWebDriver($this);
     return $element;
 }
 public function testPostFinishAddPhenotypeInfoToCMTIndividual()
 {
     // Wait for redirect
     $this->waitUntil(WebDriverExpectedCondition::titleContains("Submission of"));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000003$/', $this->driver->getCurrentURL()));
     // Move mouse to Individuals tab and click 'view all individuals' option.
     $tabElement = $this->driver->findElement(WebDriverBy::id("tab_individuals"));
     $this->driver->getMouse()->mouseMove($tabElement->getCoordinates());
     $allIndividualsLink = $this->driver->findElement(WebDriverBy::partialLinkText('View all individuals'));
     $allIndividualsLink->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::cssSelector("td.ordered"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals\\/00000001$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::id("viewentryOptionsButton_Individuals"));
     $element->click();
     $element = $this->driver->findElement(WebDriverBy::linkText("Add phenotype information to individual"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/phenotypes[\\s\\S]create&target=00000001$/', $this->driver->getCurrentURL()));
     $this->enterValue(WebDriverBy::name("Phenotype/Additional"), "Additional phenotype information");
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Phenotype/Inheritance"]/option[text()="Familial"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create phenotype information entry']"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
     // Wait for redirect
     $this->waitUntil(WebDriverExpectedCondition::titleContains("View phenotype"));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/phenotypes\\/0000000002$/', $this->driver->getCurrentURL()));
 }
 public function clear()
 {
     $elements = $this->webDriver->findElements(WebDriverBy::xpath('//tr[@class="filter"]/descendant::input[@type="text"]'));
     foreach ($elements as $element) {
         $element->clear();
     }
 }
 public function testAddScreeningToCMTIndividual()
 {
     // Wait for redirect
     $this->waitUntil(WebDriverExpectedCondition::titleContains("Submission of"));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/individual\\/00000001$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/screenings[\\s\\S]create&target=00000001$/', $this->driver->getCurrentURL()));
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Template[]"]/option[text()="RNA (cDNA)"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Template[]"]/option[text()="Protein"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Technique[]"]/option[text()="array for Comparative Genomic Hybridisation"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Technique[]"]/option[text()="array for resequencing"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Technique[]"]/option[text()="array for SNP typing"]'));
     $option->click();
     //        $this->addSelection(WebDriverBy::name("genes[]"), "value=GJB1");
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="genes[]"]/option[@value="GJB1"]'));
     $option->click();
     $this->check(WebDriverBy::name("variants_found"));
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create screening information entry']"));
     $element->click();
     $this->assertEquals("Successfully created the screening entry!", $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText());
 }
 public function testAddVariantOnlyDescribedOnGenomicLevelToIVAIndividual()
 {
     // wait for page redirect
     $this->waitUntil(WebDriverExpectedCondition::titleContains("Submission of"));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000002$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&target=0000000002$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//table[2]/tbody/tr[2]/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&reference=Genome&target=0000000002$/', $this->driver->getCurrentURL()));
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Paternal (confirmed)"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="chromosome"]/option[text()="15"]'));
     $option->click();
     $this->enterValue(WebDriverBy::name("VariantOnGenome/DNA"), "g.40702876G>T");
     $element = $this->driver->findElement(WebDriverBy::linkText("PubMed"));
     $element->click();
     // Move mouse to let browser hide tooltip of pubmed link (needed for chrome)
     $this->driver->getMouse()->mouseMove(null, 200, 200);
     $this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
     $this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
     $element->click();
     $this->assertEquals("Successfully created the variant entry!", $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText());
 }
 public function testCreateIndividualDiagnosedWithCMT()
 {
     $element = $this->driver->findElement(WebDriverBy::id("tab_submit"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals[\\s\\S]create$/', $this->driver->getCurrentURL()));
     $this->enterValue(WebDriverBy::name("Individual/Lab_ID"), "12345CMT");
     $element = $this->driver->findElement(WebDriverBy::linkText("PubMed"));
     $element->click();
     // Move mouse to let browser hide tooltip of pubmed link (needed for chrome)
     $this->driver->getMouse()->mouseMove(null, 200, 200);
     $this->enterValue(WebDriverBy::name("Individual/Reference"), "{PMID:Fokkema et al (2011):21520333}");
     $this->enterValue(WebDriverBy::name("Individual/Remarks"), "No Remarks");
     $this->enterValue(WebDriverBy::name("Individual/Remarks_Non_Public"), "Still no remarks");
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="active_diseases[]"]/option[text()="CMT (Charcot Marie Tooth Disease)"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create individual information entry']"));
     $element->click();
     $this->assertEquals("Successfully created the individual information entry!", $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText());
 }
 function test1()
 {
     $user = new User();
     $user->setEmail("*****@*****.**");
     $user->setUsername("test");
     $user->setPassword("ouhosu");
     $this->em->persist($user);
     $tree = new Tree();
     $tree->setTitleAdmin('Tree');
     $tree->setPublicId('tree');
     $tree->setOwner($user);
     $this->em->persist($tree);
     $treeVersion = new TreeVersion();
     $treeVersion->setTree($tree);
     $treeVersion->setPublicId('version');
     $this->em->persist($treeVersion);
     $startNode = new Node();
     $startNode->setTreeVersion($treeVersion);
     $startNode->setTitle("START HERE");
     $startNode->setPublicId('start');
     $this->em->persist($startNode);
     $endNode = new Node();
     $endNode->setTreeVersion($treeVersion);
     $endNode->setTitle("END HERE");
     $endNode->setPublicId('end');
     $this->em->persist($endNode);
     $nodeOption = new NodeOption();
     $nodeOption->setTitle("LETS GO HERE");
     $nodeOption->setTreeVersion($treeVersion);
     $nodeOption->setNode($startNode);
     $nodeOption->setDestinationNode($endNode);
     $nodeOption->setPublicId('option');
     $this->em->persist($nodeOption);
     $treeVersionPublished = new TreeVersionPublished();
     $treeVersionPublished->setTreeVersion($treeVersion);
     $treeVersionPublished->setPublishedBy($user);
     $this->em->flush();
     $tvsn = new TreeVersionStartingNode();
     $tvsn->setNode($startNode);
     $tvsn->setTreeVersion($treeVersion);
     $this->em->persist($tvsn);
     $published = new TreeVersionPublished();
     $published->setTreeVersion($treeVersion);
     $this->em->persist($published);
     $this->em->flush();
     // ######################################################## LOAD PAGE
     $this->driver->get('http://localhost/app_dev.php/tree/tree/demo/cascade');
     $startLink = $this->driver->findElement(WebDriverBy::id('StartTreeLink'));
     $this->assertEquals('Start Tree!', $startLink->getText());
     // ######################################################## Start Tree
     $startLink->click();
     sleep($this->sleepOnActionWithNetwork);
     $nodeTitle = $this->driver->findElement(WebDriverBy::id('DemoHere'));
     $this->assertEquals(0, strpos($nodeTitle->getText(), 'START HERE'));
     // ######################################################## LOAD PAGE
     $this->driver->findElement(WebDriverBy::id('DemoHere'))->findElement(WebDriverBy::cssSelector('option[value="option"]'))->click();
     sleep($this->sleepOnActionNoNetwork);
     $nodeTitle = $this->driver->findElement(WebDriverBy::id('DemoHere'));
     $this->assertGreaterThan(0, strpos($nodeTitle->getText(), 'END HERE'));
 }
 public function testAddVariantLocatedWithinGeneToHealthyIndividual()
 {
     // wait for page redirect
     $this->waitUntil(WebDriverExpectedCondition::presenceOfElementLocated(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b")));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000001$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&target=0000000001$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath('//b[contains(., "A variant that is located within a gene")]'));
     //        $element = $this->driver->findElement(WebDriverBy::xpath("//table[2]/tbody/tr/td[2]/b"));
     $element->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//tr[@id='IVD']/td[2]"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&reference=Transcript&geneid=IVD&target=0000000001$/', $this->driver->getCurrentURL()));
     $this->uncheck(WebDriverBy::name("ignore_00000001"));
     $this->enterValue(WebDriverBy::name("00000001_VariantOnTranscript/Exon"), "2");
     $this->enterValue(WebDriverBy::name("00000001_VariantOnTranscript/DNA"), "c.456T>G");
     $element = $this->driver->findElement(WebDriverBy::cssSelector("button.mapVariant"));
     $element->click();
     // Wait until RNA description field is filled after AJAX request.
     $firstRNAInputSelector = '(//input[contains(@name, "VariantOnTranscript/RNA")])[1]';
     $this->waitUntil(function ($driver) use($firstRNAInputSelector) {
         $firstRNAInput = $driver->findElement(WebDriverBy::xpath($firstRNAInputSelector));
         $firstRNAValue = $firstRNAInput->getAttribute('value');
         return !empty($firstRNAValue);
     });
     // Check RNA description.
     $firstRNAInput = $this->driver->findElement(WebDriverBy::xpath($firstRNAInputSelector));
     $firstRNAValue = $firstRNAInput->getAttribute('value');
     $this->assertTrue((bool) preg_match('/^r\\.\\([\\s\\S]\\)$/', $firstRNAValue));
     // Check protein description.
     $firstProteinInputSelector = '(//input[contains(@name, "VariantOnTranscript/Protein")])[1]';
     $firstProteinInput = $this->driver->findElement(WebDriverBy::xpath($firstProteinInputSelector));
     $firstProteinValue = $firstProteinInput->getAttribute('value');
     $this->assertRegExp('/^p\\.\\(Tyr152[\\s\\S]*\\)$/', $firstProteinValue);
     $GenomicDNAChange = $this->driver->findElement(WebDriverBy::name('VariantOnGenome/DNA'));
     $this->assertEquals("g.40702987T>G", $GenomicDNAChange->getAttribute('value'));
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="00000001_effect_reported"]/option[text()="Effect unknown"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="00000001_effect_concluded"]/option[text()="Effect unknown"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Paternal (confirmed)"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::linkText("PubMed"));
     $element->click();
     $this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
     $this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "0.05");
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
     $option->click();
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
     $element->click();
     $this->assertEquals("Successfully created the variant entry!", $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText());
 }
Example #18
0
 /**
  * @param $selector
  * @param $content
  */
 private function fillRteEditor($selector, $content)
 {
     $this->executeInSelenium(function (\Facebook\WebDriver\Remote\RemoteWebDriver $webDriver) use($selector, $content) {
         $webDriver->switchTo()->frame($webDriver->findElement($selector));
         $webDriver->executeScript('arguments[0].innerHTML = "' . addslashes($content) . '"', [$webDriver->findElement(\Facebook\WebDriver\WebDriverBy::tagName('body'))]);
         $webDriver->switchTo()->defaultContent();
     });
 }
 public function testFinishIndividualDiagnosedHealthy()
 {
     // wait for page redirect
     $this->waitUntil(WebDriverExpectedCondition::titleContains("Submission of"));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000001$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//tr[3]/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
 }
Example #20
0
 private function getSelectOptionValues($select)
 {
     $select = new WebDriverSelect($this->webDriver->findElement(WebDriverBy::cssSelector($select)));
     $options = [];
     foreach ($select->getOptions() as $option) {
         $options[] = $option->getText();
     }
     return $options;
 }
 /** 
  * Test homepage goes to projects page.
  *
  */
 public function testHomepageProjects()
 {
     # Get homepage url.
     $this->driver->get('http://docs.seleniumhq.org/');
     # Click projects menu link.
     $link = $this->driver->findElement(WebDriverBy::id('menu_projects'));
     $link->click();
     # Assert projects url.
     $this->assertSame('http://docs.seleniumhq.org/projects/', $this->driver->getCurrentURL());
 }
 public function testMyTestCase()
 {
     $this->driver->get(ROOT_URL . "/src/submit/screening/0000000002");
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000002$/', $this->driver->getCurrentURL()));
     $element = $this->driver->findElement(WebDriverBy::xpath("//tr[3]/td[2]/b"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
     $this->waitUntil(WebDriverExpectedCondition::titleContains("View individual"));
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals\\/00000001$/', $this->driver->getCurrentURL()));
 }
Example #23
0
 public function testSecondInsertImport()
 {
     $this->driver->get(ROOT_URL . "/src/import");
     $this->enterValue(WebDriverBy::name("import"), ROOT_PATH . "../tests/test_data_files/SecondInsertImport.txt");
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="mode"]/option[text()="Add only, treat all data as new"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Import file']"));
     $element->click();
     $this->assertEquals("Done importing!", $this->driver->findElement(WebDriverBy::id("lovd_sql_progress_message_done"))->getText());
 }
 /**
  * Successful authentication test
  */
 public function testSuccessLogin()
 {
     $this->webDriver->get($this->authenticationPageUrl);
     $this->webDriver->findElement(WebDriverBy::id('login'))->sendKeys($this->login);
     $this->webDriver->findElement(WebDriverBy::id('password'))->sendKeys($this->password);
     $this->webDriver->findElement(WebDriverBy::cssSelector('button[type="submit"]'))->click();
     $this->webDriver->wait(5);
     $nameElement = $this->webDriver->findElement(WebDriverBy::xpath('/html/body/nav/div[1]/a/div/span[1]'));
     $this->assertEquals('Andrei Troskov', $nameElement->getText());
 }
Example #25
0
 public function testMakeUserCurator()
 {
     $this->driver->get(ROOT_URL . "/src/genes/IVD?authorize");
     $element = $this->driver->findElement(WebDriverBy::linkText("Test Curator"));
     $element->click();
     $this->enterValue(WebDriverBy::xpath("//td/input[@type='password']"), "test1234");
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Save curator list']"));
     $element->click();
     $this->assertEquals("Successfully updated the curator list!", $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText());
 }
Example #26
0
 public function testUpdatetImport()
 {
     $this->driver->get(ROOT_URL . "/src/import");
     $this->enterValue(WebDriverBy::name("import"), ROOT_PATH . "../tests/test_data_files/UpdateImport.txt");
     $option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="mode"]/option[text()="Update existing data (in beta)"]'));
     $option->click();
     $element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Import file']"));
     $element->click();
     $this->assertTrue((bool) preg_match('/^[\\s\\S]*The following sections are modified and updated in the database: Columns, Diseases, Individuals, Phenotypes, Screenings, Variants_On_Genome, Variants_On_Transcripts\\.$/', $this->driver->findElement(WebDriverBy::id("lovd_sql_progress_message_done"))->getText()));
 }
 function test1()
 {
     $user = new User();
     $user->setEmail("*****@*****.**");
     $user->setUsername("test");
     $user->setPassword("ouhosu");
     $this->em->persist($user);
     $tree = new Tree();
     $tree->setTitleAdmin('Tree');
     $tree->setPublicId('tree');
     $tree->setOwner($user);
     $this->em->persist($tree);
     $treeVersion = new TreeVersion();
     $treeVersion->setTree($tree);
     $treeVersion->setPublicId('version');
     $treeVersion->setFeatureLibraryContent(true);
     $this->em->persist($treeVersion);
     $startNode = new Node();
     $startNode->setTreeVersion($treeVersion);
     $startNode->setTitle("START HERE");
     $startNode->setPublicId('start');
     $this->em->persist($startNode);
     $libraryContent = new LibraryContent();
     $libraryContent->setTreeVersion($treeVersion);
     $libraryContent->setBodyText('TREE CONTENT');
     $this->em->persist($libraryContent);
     $nodeHasLibraryContent = new NodeHasLibraryContent();
     $nodeHasLibraryContent->setSort(0);
     $nodeHasLibraryContent->setNode($startNode);
     $nodeHasLibraryContent->setLibraryContent($libraryContent);
     $this->em->persist($nodeHasLibraryContent);
     $treeVersionPublished = new TreeVersionPublished();
     $treeVersionPublished->setTreeVersion($treeVersion);
     $treeVersionPublished->setPublishedBy($user);
     $this->em->flush();
     $tvsn = new TreeVersionStartingNode();
     $tvsn->setNode($startNode);
     $tvsn->setTreeVersion($treeVersion);
     $this->em->persist($tvsn);
     $published = new TreeVersionPublished();
     $published->setTreeVersion($treeVersion);
     $this->em->persist($published);
     $this->em->flush();
     // ######################################################## LOAD PAGE
     $this->driver->get('http://localhost/app_dev.php/tree/tree/demo');
     $startLink = $this->driver->findElement(WebDriverBy::id('StartTreeLink'));
     $this->assertEquals('Start Tree!', $startLink->getText());
     // ######################################################## Start Tree
     $startLink->click();
     sleep($this->sleepOnActionWithNetwork);
     $nodeTitle = $this->driver->findElement(WebDriverBy::id('DemoHere'))->findElement(WebDriverBy::className('node'))->findElement(WebDriverBy::className('title'));
     $this->assertEquals('START HERE', $nodeTitle->getText());
     $nodeBody = $this->driver->findElement(WebDriverBy::id('DemoHere'))->findElement(WebDriverBy::className('node'))->findElement(WebDriverBy::className('body'));
     $this->assertEquals('TREE CONTENT', $nodeBody->getText());
 }
Example #28
0
 public function extract()
 {
     $xpath = $this->theme->getWidgetAttributeByLabelXpath($this->label);
     $elements = $this->webDriver->findElements(WebDriverBy::xpath($xpath));
     foreach ($elements as $element) {
         if ($element->isDisplayed()) {
             $this->element = $element;
             return;
         }
     }
 }
Example #29
0
 /**
  * @param array $instructions
  * @throws ElementNotVisibleException
  * @throws InvalidConfigurationException
  * @throws \Facebook\WebDriver\Exception\NoSuchElementException
  * @throws \Facebook\WebDriver\Exception\TimeOutException
  */
 public function navigateTo(array $instructions)
 {
     $this->testCase->assertGreaterThan(0, count($instructions), 'Instruction navigator requires at least one instruction');
     $useAutomaticTiming = true;
     foreach ($instructions as $key => $instruction) {
         if (count($instruction) > 0 && $instruction[0] == self::INSTRUCTION_USE_MANUAL_TIMING) {
             $useAutomaticTiming = false;
         }
     }
     foreach ($instructions as $instruction) {
         $this->testCase->assertCount(2, $instruction, 'Navigation instructions need to be a 2 member array.  First item is the instruction type, the second is the XPath');
         list($instruction, $xpath) = $instruction;
         if ($useAutomaticTiming) {
             $this->testCase->sleep('100ms');
             // Courtesy sleep of 100ms
             if ($instruction == self::INSTRUCTION_MOUSE_MOVETO || $instruction == self::INSTRUCTION_MOUSE_CLICK) {
                 $this->webdriver->wait()->until(ExpectedCondition::elementExists($xpath, WebDriver::BY_XPATH));
                 $this->webdriver->wait(5)->until(ExpectedCondition::elementToBeClickable(WebDriverBy::xpath($xpath)));
             }
         }
         switch ($instruction) {
             case self::INSTRUCTION_MOUSE_CLICK:
                 $element = $this->webdriver->byXpath($xpath);
                 if (!$element->isDisplayed()) {
                     throw new ElementNotVisibleException('The element is not visible: ' . $xpath);
                 }
                 $element->click();
                 break;
             case self::INSTRUCTION_MOUSE_MOVETO:
                 $element = $this->webdriver->byXpath($xpath);
                 $this->webdriver->getMouse()->mouseMove($element->getCoordinates());
                 break;
             case self::INSTRUCTION_WAIT_FOR_EXISTS:
                 $this->webdriver->wait()->until(ExpectedCondition::elementExists($xpath, WebDriver::BY_XPATH));
                 break;
             case self::INSTRUCTION_WAIT_FOR_NOT_EXISTS:
                 $this->webdriver->wait()->until(ExpectedCondition::not(ExpectedCondition::elementExists($xpath, WebDriver::BY_XPATH)));
                 break;
             case self::INSTRUCTION_WAIT_FOR_DISPLAYED:
                 $element = $this->webdriver->byXpath($xpath);
                 $this->webdriver->wait()->until(ExpectedCondition::visibilityOf($element));
                 break;
             case self::INSTRUCTION_PAUSE:
                 $this->testCase->sleep($xpath);
                 break;
             case self::INSTRUCTION_WAIT_FOR_HIDDEN:
                 $element = $this->webdriver->byXpath($xpath);
                 $this->webdriver->wait()->until(ExpectedCondition::not(ExpectedCondition::visibilityOf($element)));
                 break;
             default:
                 throw new InvalidConfigurationException('Unknown login instruction: ' . $instruction);
         }
     }
 }
 public function testHumanReadableString()
 {
     $this->assertEquals("'string selector'", Locator::humanReadableString("string selector"));
     $this->assertEquals("css '.something'", Locator::humanReadableString(['css' => '.something']));
     $this->assertEquals("css selector '.something'", Locator::humanReadableString(WebDriverBy::cssSelector('.something')));
     try {
         Locator::humanReadableString(null);
         $this->fail("Expected exception when calling humanReadableString() with invalid selector");
     } catch (\InvalidArgumentException $e) {
     }
 }