public function search($params, $personal = false)
{
$query = Species::find();
$dataProvider = new ActiveDataProvider(['query' => $query]);
$this->load($params);
return $dataProvider;
}
public function actionDelete($id)
{
$model = Species::findOne($id);
if ($model && !$model->observations) {
$model->deleted = true;
$model->save(false);
}
return $this->redirect(Url::toRoute('species/index'));
}
public function actionForm($id = NULL)
{
$model = $id ? Observations::findOne($id) : new Observations();
if (Yii::$app->getRequest()->getQueryParam('visit_id') && is_null($id)) {
$model->visit_id = Yii::$app->getRequest()->getQueryParam('visit_id');
}
if ($model->load(Yii::$app->request->post())) {
/* Load picture file */
$model->pictureFile = UploadedFile::getInstance($model, 'pictureFile');
/* Validate model */
if ($model->validate()) {
/* Upload picture */
if ($model->pictureFile) {
$model->upload();
}
/* Delete picture if selected */
if ($model->deleteImage && !$model->pictureFile) {
$model->picture = NULL;
}
/* Check for auto-validation on observqation */
if (Yii::$app->user->getIdentity()->hasRole(['validator', 'administrator'])) {
$model->markAsValidated();
}
/* When the observation type equals a null-observation, clear all other fields */
if ($model->observation_type == Observations::OBSERVATION_TYPE_NULL) {
foreach ($model->attributes as $attribute => $value) {
if (!in_array($attribute, ['id', 'visit_id', 'observation_type', 'validated_by_id', 'validated_date', 'box_id', 'date_created', 'date_updated', 'deleted'])) {
$model->{$attribute} = NULL;
}
}
}
$model->save(false);
if ($model->observation_type != Observations::OBSERVATION_TYPE_NULL && Observations::find()->where(['and', ['deleted' => false], ['box_id' => $model->box_id], ['observation_type' => Observations::OBSERVATION_TYPE_NULL]])->exists()) {
foreach (Observations::find()->where(['and', ['deleted' => false], ['observation_type' => Observations::OBSERVATION_TYPE_NULL], ['box_id' => $model->box_id]])->all() as $nullObservation) {
$nullObservation->delete();
}
}
return $this->redirect(Url::toRoute(['visits/detail/' . $model->visit_id]));
}
}
return $this->render('form', ['model' => $model, 'boxes' => Boxes::find()->where(['project_id' => Visits::findOne($model->visit_id)->project_id])->all(), 'species' => Species::find()->asArray()->all(), 'parasites' => Species::find()->where(['taxon' => Species::TAXONOMY_ARTHROPOD])->all()]);
}
use yii\bootstrap\ActiveForm;
use app\models\Species;
?>
<h1><?php
echo Yii::t('app', 'Soort');
?>
<?php
echo $model->isNewRecord ? Yii::t('app', 'toevoegen') : Yii::t('app', 'bewerken');
?>
</h1>
<div class="species-form">
<?php
$form = ActiveForm::begin(['enableClientValidation' => false]);
?>
<?php
echo $form->field($model, 'taxon')->dropDownList(Species::getTaxonomies());
?>
<?php
echo $form->field($model, 'genus');
?>
<?php
echo $form->field($model, 'speceus');
?>
<?php
echo $form->field($model, 'dutch');
?>
<?php
echo $form->field($model, 'url');
?>
<div class="form-group text-right">
<input type="submit" class="btn btn-success" value="<?php
<?php
}
?>
</table>
<?php
$form = ActiveForm::begin(['enableClientValidation' => false, 'options' => ['enctype' => 'multipart/form-data']]);
?>
<?php
echo $form->field($model, 'box_id')->dropDownList(Arrayhelper::map($boxes, 'id', 'code'));
?>
<?php
echo $form->field($model, 'observation_type')->dropDownList(Observations::getObservationTypes(), ['data-observation-type' => 1]);
?>
<div class="observation-form-details">
<?php
echo $form->field($model, 'taxon_id')->dropDownList(Species::getTaxonomies(true), ['data-taxon-identifier' => 1]);
?>
<?php
echo $form->field($model, 'species_id')->dropDownList(ArrayHelper::map($species, 'id', 'dutch'), ['data-species-identifier' => 1]);
?>
<div class="sight-container hidden-js">
<?php
echo $form->field($model, 'age')->dropDownList(Observations::getAgeOptions());
?>
<?php
echo $form->field($model, 'sight_quantity');
?>
</div>
<div class="manure-container hidden-js">
<?php
echo $form->field($model, 'manure_collected')->checkbox(['data-manure-collected' => 1]);
public function store()
{
$csvPath = Input::file('file')->getRealPath();
$collectionName = Input::file('file')->getClientOriginalName();
$collectionName = substr($collectionName, 0, strlen($collectionName) - 4);
$csv = new parseCSV();
$csv->auto($csvPath);
$data = $csv->data;
// If collection exists, drop it
if (Schema::hasCollection($collectionName)) {
Schema::drop($collectionName);
}
switch ($collectionName) {
case 'Species':
Schema::create('Species', function ($collection) {
// $collection->unique('spID');
});
foreach ($data as $row) {
$keys = array_keys($row);
//
$newSpecies = new Species();
//
foreach ($keys as $key) {
if (is_numeric($row[$key])) {
$row[$key] = (int) $row[$key];
}
$newSpecies[$key] = $row[$key];
}
$newSpecies->save();
}
break;
case 'Interactions':
Schema::create('Interactions', function ($collection) {
// $collection->unique('spID');
});
foreach ($data as $row) {
$keys = array_keys($row);
//
$newInteraction = new Interaction();
//
foreach ($keys as $key) {
if (is_numeric($row[$key])) {
$row[$key] = (int) $row[$key];
}
$newInteraction[$key] = $row[$key];
}
$newInteraction->save();
}
break;
case 'TaxaGroups':
Schema::create('TaxaGroups', function ($collection) {
// $collection->unique('spID');
});
foreach ($data as $row) {
$keys = array_keys($row);
//
$newTaxaGroup = new TaxaGroup();
//
foreach ($keys as $key) {
if (is_numeric($row[$key])) {
$row[$key] = (int) $row[$key];
}
$newTaxaGroup[$key] = $row[$key];
}
$newTaxaGroup->save();
}
break;
case 'LitSources':
Schema::create('LitSources', function ($collection) {
// $collection->unique('spID');
});
foreach ($data as $row) {
$keys = array_keys($row);
//
$newLitSource = new LitSource();
//
foreach ($keys as $key) {
if (is_numeric($row[$key])) {
$row[$key] = (int) $row[$key];
}
$newLitSource[$key] = $row[$key];
}
$newLitSource->save();
}
break;
case 'Images':
Schema::create('Images', function ($collection) {
// $collection->unique('spID');
});
foreach ($data as $row) {
$keys = array_keys($row);
//
$newImage = new Image();
//
foreach ($keys as $key) {
if (is_numeric($row[$key])) {
$row[$key] = (int) $row[$key];
}
$newImage[$key] = $row[$key];
}
$newImage->save();
}
break;
case 'Synonyms':
Schema::create('Synonyms', function ($collection) {
// $collection->unique('spID');
});
foreach ($data as $row) {
$keys = array_keys($row);
//
$newSynonym = new Synonym();
//
foreach ($keys as $key) {
if (is_numeric($row[$key])) {
$row[$key] = (int) $row[$key];
}
$newSynonym[$key] = $row[$key];
}
$newSynonym->save();
}
break;
case 'BioNotes':
Schema::create('BioNotes', function ($collection) {
// $collection->unique('spID');
});
foreach ($data as $row) {
$keys = array_keys($row);
//
$newBioNote = new BioNote();
//
foreach ($keys as $key) {
if (is_numeric($row[$key])) {
$row[$key] = (int) $row[$key];
}
$newBioNote[$key] = $row[$key];
}
$newBioNote->save();
}
break;
default:
return "Nothing is done";
}
//$csv->data[4]['spID'];
return 'success!';
}
<?php
}
}
?>
<br><br>
<div class="table-responsive">
<table class="table">
<tr>
<td><?php
echo $specie->getAttributeLabel('taxon');
?>
</td>
<td><?php
echo Species::getTaxonomy($specie->taxon);
?>
</td>
</tr>
<tr>
<td><?php
echo $specie->getAttributeLabel('genus');
?>
</td>
<td><?php
echo Html::encode($specie->genus);
?>
</td>
</tr>
<tr>
<td><?php
public function getSpeciesByID(Request $request)
{
$spID = $request->input('spID');
$speciesObject = Species::where('spID', '=', $spID)->where('uploadToWeb', '=', 1)->get();
$speciesObject[0]->images->toArray();
$speciesObject[0]->bioNotes->toArray();
$speciesObject[0]->synonyms->toArray();
$speciesObject[0]->litSources->toArray();
$speciesObject[0]->interactions->toArray();
$hierachy = [];
$parentTaxaGroupID = $speciesObject[0]->taxaGroupID;
while (TaxaGroup::find($parentTaxaGroupID)->tier > 1) {
$taxaGroupName = TaxaGroup::find($parentTaxaGroupID)->TaxaGroupName;
array_unshift($hierachy, ['taxaGroupID' => $parentTaxaGroupID, 'TaxaGroupName' => $taxaGroupName]);
$parentTaxaGroupID = TaxaGroup::find($parentTaxaGroupID)->parentTaxaGroupID;
}
return response()->json(['speciesObject' => $speciesObject, 'hierachy' => $hierachy]);
}
public function getParasite()
{
return $this->hasOne(Species::className(), ['id' => 'catch_parasite_id']);
}
