public static function get_submission($values, $args)
 {
     $values['habitat-count'] = 2;
     $habitatSamples = array();
     for ($i = 1; $i <= $values['habitat-count']; $i++) {
         $habitatSamples["habitat{$i}"] = array();
     }
     foreach ($values as $key => $value) {
         if (substr_count($key, ':') === 3) {
             $parts = explode(':', $key, 4);
             if ($parts[0] === 'smpAttr') {
                 // If the last part of a habitat field is not a number, this is just a dummy field used
                 // when cloning habitat controls. We also skip empty new attribute values.
                 if (preg_match('/^\\d+$/', $parts[3]) && (!empty($parts[2]) || !empty($value))) {
                     // habitat number is the last part of the attribute field name
                     $id = array_pop($parts);
                     // remove empty stuff from the attribute name (e.g. an unused space for the existing value ID, if a new attribute value).
                     while (empty($parts[count($parts) - 1])) {
                         array_pop($parts);
                     }
                     $fieldname = implode(':', $parts);
                     $habitatSamples["habitat{$id}"][$fieldname] = $value;
                 }
                 unset($values[$key]);
             }
         }
         $parts = explode(':', $key);
         // For the group_name, the autocomplete functionality needs to be removed from the submission.
         // So copy the edit box into the underlying field which gets posted.
         if (array_pop($parts) === 'group_name') {
             $values[implode(':', $parts)] = $value;
         }
     }
     $buddyPairSubmission = submission_builder::wrap_with_images($values, 'sample');
     unset($buddyPairSubmission['fields']['habitat-count']);
     // Get the list of records implied by the SACFOR data for each habitat. At this point we'll create 1 big list and split
     // it across the habitats later.
     $occurrences = data_entry_helper::wrap_species_checklist($values, true, array(), array());
     // now work out which habitat contains which occurrence
     $habitatOccurrences = array();
     foreach (array_keys($habitatSamples) as $habitatId) {
         $habitatOccurrences[$habitatId] = array();
     }
     foreach ($occurrences as $occurrence) {
         // take a copy of the fields with all habitat data
         $fields = array_merge($occurrence['model']['fields']);
         // @todo Remove hard coded field ID.
         $habitatFields = preg_grep('/occAttr:243(:\\d+)?/', array_keys($fields));
         if (count($habitatFields)) {
             $habitatId = $fields[array_pop($habitatFields)]['value'];
         } else {
             // this case occurs when deleting an occurrence, as the habitat ID input field is disabled. Therefore
             // we need to revert to the original hidden sampleIdx field for the loaded record.
             $habitatId = $fields['sampleIDX']['value'] + 1;
         }
         // zero indexed
         $habitatOccurrences["habitat{$habitatId}"][] = $occurrence;
     }
     // now create the submodel data for each habitat.
     $buddyPairSubmission['subModels'] = array();
     // copy the basic sample data into each set of habitat subsample values
     foreach ($habitatSamples as $habitatId => &$habitatSample) {
         $habitatIdx = str_replace('habitat', '', $habitatId);
         $habitatSample['website_id'] = $values['website_id'];
         $habitatSample['survey_id'] = $values['survey_id'];
         if (isset($_POST["habitat_sample_id:{$habitatIdx}"])) {
             $habitatSample['sample:id'] = $_POST["habitat_sample_id:{$habitatIdx}"];
         }
         $habitatSample['sample:date'] = $values['sample:date'];
         $habitatSample['sample:entered_sref'] = $values['sample:entered_sref'];
         $habitatSample['sample:entered_sref_system'] = $values['sample:entered_sref_system'];
         $habitatSample['sample:input_form'] = $values['sample:input_form'];
         if (isset($_POST["sample:comment:{$habitatIdx}"])) {
             $habitatSample['sample:comment'] = $_POST["sample:comment:{$habitatIdx}"];
             unset($buddyPairSubmission['fields']["comment:{$habitatIdx}"]);
         }
         $habitatSubmission = submission_builder::wrap($habitatSample, 'sample');
         $habitatSubmission['subModels'] = $habitatOccurrences[$habitatId];
         $buddyPairSubmission['subModels'][] = array('fkId' => 'parent_id', 'model' => $habitatSubmission);
     }
     return $buddyPairSubmission;
 }
 /**
  * Helper function to simplify building of a submission that contains a single sample
  * and multiple occurrences records generated by a species_checklist control.
  *
  * @param array $values List of the posted values to create the submission from.
  * @param boolean $include_if_any_data If true, then any list entry which has any data
  * set will be included in the submission. Set this to true when hiding the select checkbox
  * in the grid.
  * @param array $zero_attrs Set to an array of abundance attribute field IDs that can be
  * treated as abundances. Alternatively set to true to treat all occurrence custom attributes
  * as possible zero abundance indicators.
  * @param array $zero_values Set to an array of values which are considered to indicate a 
  * zero abundance record if found for one of the zero_attrs. Values are case-insensitive. Defaults to 
  * array('0','None','Absent').
  * of values that can be treated as meaning a zero abundance record. E.g.
  * array('
  * @return array Sample submission array
  */
 public static function build_sample_occurrences_list_submission($values, $include_if_any_data = false, $zero_attrs = true, $zero_values = array('0', 'None', 'Absent'))
 {
     // We're mainly submitting to the sample model
     $sampleMod = submission_builder::wrap_with_images($values, 'sample');
     $occurrences = data_entry_helper::wrap_species_checklist($values, $include_if_any_data, $zero_attrs, $zero_values);
     // Add the occurrences in as subModels without overwriting others such as a sample image
     if (array_key_exists('subModels', $sampleMod)) {
         $sampleMod['subModels'] = array_merge($sampleMod['subModels'], $occurrences);
     } else {
         $sampleMod['subModels'] = $occurrences;
     }
     return $sampleMod;
 }
Example #3
0
<?php

session_start();
require '../../../client_helpers/data_entry_helper.php';
require '../data_entry_config.php';
$base_url = helper_config::$base_url;
$readAuth = data_entry_helper::get_read_auth($config['website_id'], $config['password']);
// Store data from the previous page into the session
data_entry_helper::add_post_to_session();
// To post our data, we need to get the whole lot from the session
$data = data_entry_helper::extract_session_array();
// Collect up the sample, sample attributes and grid data
$sampleMod = data_entry_helper::wrap($data, 'sample');
$smpAttrs = data_entry_helper::wrap_attributes($data, 'sample');
$occurrences = data_entry_helper::wrap_species_checklist($data);
// Add the occurrences in as submodels
$sampleMod['subModels'] = $occurrences;
// and link in the attributes of the sample
$sampleMod['metaFields']['smpAttributes']['value'] = $smpAttrs;
// Wrap submission and submit
$submission = array('submission' => array('entries' => array(array('model' => $sampleMod))));
$response = data_entry_helper::forward_post_to('save', $submission);
if (array_key_exists('success', $response)) {
    // on success, redirect to the thank you page
    header('Location:success.php');
    die;
}
?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en">
<head>
 /**
  * Helper function to simplify building of a submission that contains a single sample
  * and multiple occurrences records generated by a species_checklist control.
  *
  * @param array $values List of the posted values to create the submission from.
  * @param boolean $include_if_any_data If true, then any list entry which has any data
  * set will be included in the submission. Set this to true when hiding the select checkbox
  * in the grid.
  * @return array Sample submission array
  */
 public static function build_sample_occurrences_list_submission($values, $include_if_any_data = false)
 {
     // We're mainly submitting to the sample model
     $sampleMod = data_entry_helper::wrap_with_attrs($values, 'sample');
     $occurrences = data_entry_helper::wrap_species_checklist($values, $include_if_any_data);
     // Add the occurrences in as subModels
     $sampleMod['subModels'] = $occurrences;
     return $sampleMod;
 }
 public static function build_three_level_sample_with_occ_submission($values, $website_id, $password, $gpxDataAttrId, $diveStartTimeAttrId, $exifDateTimeAttrId)
 {
     $standardGridValues = array();
     //Create two different $values arrays.
     //The $standardGridValues array contains all the values you would expect from a normal species grid entry form. This contains the species grid we don't have images for.
     //The $values array contains the values from the form and only includes the other three level sample species grid
     foreach ($values as $key => $value) {
         if (strpos($key, 'sc:') === false || strpos($key, 'sc:') !== false && strpos($key, 'first-level-smp-occ-grid') !== false) {
             $standardGridValues[$key] = $values[$key];
         }
         if (strpos($key, 'first-level-smp-occ-grid') !== false) {
             unset($values[$key]);
         }
     }
     //Identify any occurrences which don't have images and will therefore be attached to the top level sample.
     $standardOccurrences = data_entry_helper::wrap_species_checklist($standardGridValues);
     $modelName = 'sample';
     //Wrap up the main parent sample
     $modelWrapped = data_entry_helper::wrap($values, $modelName, null);
     //2nd level samples are prefixed with the word new_sample_sub_sample:<num>: or existing_sample_sub_sample:<id>: in the name.
     //This function returns an array of possible sub-samples (habitats) which have been extracted from the values on the page by looking
     //for this text on the front of the keys in the values array.
     $possibleSubSampleModels = self::extract_sub_sample_data($values, $website_id, $password, $gpxDataAttrId);
     //Cycle through the sub-samples and then set them up as sub-samples of the main sample
     if (!empty($possibleSubSampleModels)) {
         foreach ($possibleSubSampleModels as $subSample) {
             $modelWrapped['subModels'][] = array('fkId' => 'sample_id', 'model' => $subSample);
         }
     }
     // Build sub-models for the sample media files. Also extract the image exif data
     $media = data_entry_helper::extract_media_data($values, $modelName . '_medium', true, true);
     if (function_exists('exif_read_data')) {
         $uploadpath = './sites/all/modules/iform/client_helpers/upload/';
         foreach ($media as $idx => $mediaItem) {
             if (file_exists($uploadpath . $mediaItem['path'])) {
                 $exif = exif_read_data($uploadpath . $mediaItem['path'], 0, true);
                 $media[$idx]['exif'] = json_encode($exif);
                 $strToTime = strtotime($exif['EXIF']['DateTimeOriginal']);
                 $time = explode(' ', $exif['EXIF']['DateTimeOriginal']);
                 //On the first tab (when we don't have a date field) then collect the date from the exif from the earliest photo
                 //and also set a default on the time field in the same way
                 //Cycle round the media items and only set the date/time if it is the smallest one so far.
                 if ((empty($smallestStrToTime) || $smallestStrToTime > $strToTime) && !empty($exif['EXIF']['DateTimeOriginal']) && empty($modelWrapped['fields']['sample:date']['value'])) {
                     $smallestStrToTime = $strToTime;
                     $gpsFromFirstExif = $exif['GPS'];
                     $modelWrapped['fields']['date']['value'] = date('d/m/Y', $smallestStrToTime);
                     $values['sample:date'] = date('d/m/Y', $smallestStrToTime);
                     $modelWrapped['fields']['smpAttr:' . $diveStartTimeAttrId]['value'] = $time[1];
                     $values['smpAttr:' . $diveStartTimeAttrid] = $time[1];
                 }
                 //Save the dates and times from the photos into an attribute for easy access by javascript, so contruct a string to save first.
                 //Note I didn't use json as that dates include colons. So the format is date,time;date,time;date,time;date,time;date,time;
                 if (!empty($mediaDates)) {
                     $mediaDates = $mediaDates . ';' . date('d/m/Y', $strToTime) . ',' . $time[1];
                 } else {
                     $mediaDates = date('d/m/Y', $strToTime) . ',' . $time[1];
                 }
             }
         }
         //When the images are first loaded, we don't have a spatial reference to create the main sample with, so try to read one from the earliest picture exif data
         if (!empty($gpsFromFirstExif['GPSLatitude']) && !empty($gpsFromFirstExif['GPSLongitude']) && !empty($gpsFromFirstExif['GPSLatitudeRef']) && !empty($gpsFromFirstExif['GPSLongitudeRef'])) {
             //Read from exif, concert from degrees, minutes, seconds to decimal degrees
             $gpsLat0 = explode('/', $gpsFromFirstExif['GPSLatitude'][0]);
             $gpsLat0 = doubleval($gpsLat0[0]) / doubleval($gpsLat0[1]);
             $gpsLat1 = explode('/', $gpsFromFirstExif['GPSLatitude'][1]);
             $gpsLat1 = doubleval($gpsLat1[0]) / doubleval($gpsLat1[1]) / 60;
             $gpsLat2 = explode('/', $gpsFromFirstExif['GPSLatitude'][2]);
             $gpsLat2 = doubleval($gpsLat2[0]) / doubleval($gpsLat2[1]) / 3600;
             $gpsLon0 = explode('/', $gpsFromFirstExif['GPSLongitude'][0]);
             $gpsLon0 = doubleval($gpsLon0[0]) / doubleval($gpsLon0[1]);
             $gpsLon1 = explode('/', $gpsFromFirstExif['GPSLongitude'][1]);
             $gpsLon1 = doubleval($gpsLon1[0]) / doubleval($gpsLon1[1]) / 60;
             $gpsLon2 = explode('/', $gpsFromFirstExif['GPSLongitude'][2]);
             $gpsLon2 = doubleval($gpsLon2[0]) / doubleval($gpsLon2[1]) / 3600;
             $lat = (string) floatval($gpsLat0 + $gpsLat1 + $gpsLat2);
             $lon = (string) floatval($gpsLon0 + $gpsLon1 + $gpsLon2);
             //Convert back into format that is acceptable to the seasearch on screen spatial reference extension which is again in degrees, minutes
             $latArray = explode('.', $lat);
             $lat = $latArray[0] . ':' . round(floatval('0.' . $latArray[1]) * 60, 4);
             $lonArray = explode('.', $lon);
             $lon = $lonArray[0] . ':' . round(floatval('0.' . $lonArray[1]) * 60, 4);
             $gpsFromFirstExif = $lat . $gpsFromFirstExif['GPSLatitudeRef'] . ' ' . $lon . $gpsFromFirstExif['GPSLongitudeRef'];
             $modelWrapped['fields']['entered_sref']['value'] = $gpsFromFirstExif;
             $values['sample:entered_sref'] = $gpsFromFirstExif;
             $modelWrapped['fields']['entered_sref_system']['value'] = '4277';
             $values['sample:entered_sref_system'] = '4277';
         }
     }
     if (!empty($mediaDates)) {
         //Need to find the attribute that starts with smpAttr:<exifDateTimeAttrId> as in edit mode it will also have the sample_attribute_value on the end so in that
         //case we need to overwrite existing value instead of creating new one.
         foreach ($values as $theKey => $theValue) {
             if (substr($theKey, 0, strlen('smpAttr:' . $exifDateTimeAttrId)) === 'smpAttr:' . $exifDateTimeAttrId) {
                 $modelWrapped['fields'][$theKey]['value'] = $mediaDates;
                 $values[$theKey] = $mediaDates;
             }
         }
     }
     foreach ($media as $item) {
         //Only add media to the main sample if it isn't already contained in any sub-sample
         if (empty($values['sample_medium:' . $item['id'] . ':sample_id']) || $values['sample_medium:' . $item['id'] . ':sample_id'] == $modelWrapped['fields']['id']['value']) {
             $wrapped = data_entry_helper::wrap($item, $modelName . '_medium');
             $modelWrapped['subModels'][] = array('fkId' => $modelName . '_id', 'model' => $wrapped);
         }
     }
     // Put any extra occurrences (without images)
     // the user has identified onto the end of the main sample model.
     if (array_key_exists('subModels', $modelWrapped)) {
         $modelWrapped['subModels'] = array_merge($modelWrapped['subModels'], $standardOccurrences);
     } else {
         $modelWrapped['subModels'] = $standardOccurrences;
     }
     //Create the third level samples with occurrences
     $modelWrapped = self::create_third_level_sample_model($modelWrapped, $values, $website_id, $password, $gpxDataAttrId);
     //The user is can rearrange which third level sample points to which second level sample. When the user does this we just need to attach the
     //change to the parent_id to the end of the submission model
     $thirdLevelSampleShiftModel = array();
     foreach ($values as $key => $value) {
         //TODO I think this name is misleading, as it isn't the sample_id for the occurrence, it is the sample_id for the occurrence sample's parent sample.
         //Maybe change name at some point.
         if (strpos($key, 'occurrence_medium') !== false && strpos($key, ':sample_id') !== false) {
             $splitKey = explode(':', $key);
             $thirdLevelSampleShiftModel['id'] = 'sample';
             $thirdLevelSampleShiftModel['fields']['id']['value'] = $splitKey[3];
             $thirdLevelSampleShiftModel['fields']['parent_id']['value'] = $value;
             if (!empty($modelWrapped['submission_list']['entries'])) {
                 $modelWrapped['submission_list']['entries'][] = $thirdLevelSampleShiftModel;
             } else {
                 $multiSubmission['id'] = 'sample';
                 $multiSubmission['submission_list']['entries'][0] = $modelWrapped;
                 $multiSubmission['submission_list']['entries'][1] = $thirdLevelSampleShiftModel;
                 $modelWrapped = $multiSubmission;
             }
         }
     }
     return $modelWrapped;
 }
Example #6
0
 /**
  * Handles the construction of a submission array from a set of form values.
  * @param array $values Associative array of form data values. 
  * @param array $args iform parameters. 
  * @return array Submission structure.
  */
 public static function get_submission($values, $args)
 {
     if (isset($values['sample:recorder_names'])) {
         if (is_array($values['sample:recorder_names'])) {
             $values['sample:recorder_names'] = implode("\r\n", $values['sample:recorder_names']);
         }
     }
     // else just load the string
     if (isset($values['gridmode'])) {
         $occurrences = data_entry_helper::wrap_species_checklist($values);
     } else {
         $occurrences = submission_builder::wrap_with_images($values, 'occurrence');
     }
     // when a non admin selects an existing location they can not modify it or its attributes and the location record does not form part of the submission
     if (isset($values['location:name'])) {
         $sampleMod = submission_builder::wrap_with_images($values, 'sample');
         if (count($occurrences) > 0) {
             $sampleMod['subModels'] = $occurrences;
         }
         $locationMod = submission_builder::wrap_with_images($values, 'location');
         $locationMod['subModels'] = array(array('fkId' => 'location_id', 'model' => $sampleMod));
         if (array_key_exists('locations_website:website_id', $_POST)) {
             $lw = submission_builder::wrap_with_images($values, 'locations_website');
             $locationMod['subModels'][] = array('fkId' => 'location_id', 'model' => $lw);
         }
         return $locationMod;
     }
     $values['sample:location_id'] = $values['location:id'];
     $sampleMod = submission_builder::wrap_with_images($values, 'sample');
     if (count($occurrences) > 0) {
         $sampleMod['subModels'] = $occurrences;
     }
     return $sampleMod;
 }
Example #7
0
 /**
  * Handles the construction of a submission array from a set of form values.
  * @param array $values Associative array of form data values. 
  * @param array $args iform parameters. 
  * @return array Submission structure.
  */
 public static function get_submission($values, $args)
 {
     if (isset($values['source'])) {
         // comes from main Sites tab, Admins may create so need to check for locations_website entry
         $locModel = submission_builder::wrap_with_images($values, 'location');
         if (isset($values['locations_website:website_id'])) {
             // assume no other submodels
             $locModel['subModels'] = array(array('fkId' => 'location_id', 'model' => array('id' => 'locations_website', 'fields' => array('website_id' => array('value' => $values['locations_website:website_id'])))));
         }
         return $locModel;
     }
     if (isset($values['sample:recorder_names'])) {
         if (is_array($values['sample:recorder_names'])) {
             $values['sample:recorder_names'] = implode("\r\n", $values['sample:recorder_names']);
         }
     }
     // else just load the string
     $sampleMod = submission_builder::wrap_with_images($values, 'sample');
     if (!isset($values['sample:deleted'])) {
         if (isset($values['gridmode'])) {
             $occurrences = data_entry_helper::wrap_species_checklist($values);
         } else {
             $occurrences = submission_builder::wrap_with_images($values, 'occurrence');
         }
         // when a non admin selects an existing location they can not modify it or its attributes and the location record does not form part of the submission
         if (isset($values['location:location_type_id'])) {
             if (count($occurrences) > 0) {
                 $sampleMod['subModels'] = $occurrences;
             }
             $locationMod = submission_builder::wrap_with_images($values, 'location');
             $locationMod['subModels'] = array(array('fkId' => 'location_id', 'model' => $sampleMod));
             if (array_key_exists('locations_website:website_id', $_POST)) {
                 $lw = submission_builder::wrap_with_images($values, 'locations_website');
                 $locationMod['subModels'][] = array('fkId' => 'location_id', 'model' => $lw);
             }
             return $locationMod;
         }
         //      $values['sample:location_id'] = $values['location:id'];
         if (count($occurrences) > 0) {
             $sampleMod['subModels'] = $occurrences;
         }
     }
     return $sampleMod;
 }
 /**
  * Builds the special submission format required for seasearch data
  * @param array $values
  * @param array $args
  * @return array
  * @throws \Exception
  */
 public static function get_submission($values, $args)
 {
     // First, build an array of the field values for each habitat sample.
     $habitatSamples = array();
     foreach ($values as $key => $value) {
         if (substr_count($key, ':') === 3) {
             $parts = explode(':', $key, 4);
             if ($parts[0] === 'smpAttr') {
                 // If the last part of a habitat field is not a number, this is just a dummy field used
                 // when cloning habitat controls.
                 if (preg_match('/^\\d+$/', $parts[3])) {
                     // habitat number is the last part of the attribute field name
                     $id = array_pop($parts);
                     if (!isset($habitatSamples["habitat{$id}"])) {
                         $habitatSamples["habitat{$id}"] = array();
                     }
                     // Skip empty new attribute values.
                     if (!empty($parts[2]) || !empty($value)) {
                         // remove empty stuff from the attribute name (e.g. an unused space for the existing value ID, if a new attribute value).
                         while (empty($parts[count($parts) - 1])) {
                             array_pop($parts);
                         }
                         $fieldname = implode(':', $parts);
                         $habitatSamples["habitat{$id}"][$fieldname] = $value;
                     }
                 }
                 unset($values[$key]);
             }
         }
         // Also check for habitat photos, attached to a fake table name indicating the habitat index
         if (preg_match('/^sample_medium(?P<id>\\d)/', $key, $matches)) {
             $parts = explode(':', $key);
             if (!isset($habitatSamples["habitat{$matches['id']}"])) {
                 $habitatSamples["habitat{$matches['id']}"] = array();
             }
             $parts[0] = 'sample_medium';
             $habitatSamples["habitat{$matches['id']}"][implode(':', $parts)] = $value;
         }
         $parts = explode(':', $key);
         // For the group_name, the autocomplete functionality needs to be removed from the submission.
         // So copy the edit box into the underlying field which gets posted.
         if (array_pop($parts) === 'group_name') {
             $values[implode(':', $parts)] = $value;
         }
     }
     // Find the attribute which contains SACFORP habitat data.
     $readAuth = data_entry_helper::get_read_auth(variable_get('indicia_website_id'), variable_get('indicia_password'));
     $attributeOpts = array('valuetable' => 'occurrence_attribute_value', 'attrtable' => 'occurrence_attribute', 'key' => 'occurrence_id', 'fieldprefix' => 'occAttr', 'extraParams' => $readAuth + array('caption' => 'SACFOR/P'), 'survey_id' => $args['survey_id']);
     $attributes = data_entry_helper::getAttributes($attributeOpts, false);
     $values['habitat-count'] = count($habitatSamples);
     $buddyPairSubmission = submission_builder::wrap_with_images($values, 'sample');
     unset($buddyPairSubmission['fields']['habitat-count']);
     // Get the list of records implied by the SACFOR data for each habitat. At this point we'll create 1 big list and split
     // it across the habitats later.
     $occurrences = data_entry_helper::wrap_species_checklist($values, true, array(), array());
     // now work out which habitat contains which occurrence
     $habitatOccurrences = array();
     foreach (array_keys($habitatSamples) as $habitatId) {
         $habitatOccurrences[$habitatId] = array();
     }
     foreach ($occurrences as $uniqueId => $occurrence) {
         // for existing occurrences, they are already linked to a sample via the SampleIDX field.
         if (!empty($occurrence['model']['fields']['sampleIDX'])) {
             $habitatOccurrences['habitat' . ($occurrence['model']['fields']['sampleIDX']['value'] + 1)][] = $occurrence;
         } else {
             // search the posted data for a habitat SACFOR value for the occurrence row
             foreach (array_keys($habitatSamples) as $habitatId) {
                 $habitatIdx = str_replace('habitat', '', $habitatId);
                 if (!empty($values["{$uniqueId}:habitat-{$habitatIdx}"])) {
                     $thisOccurrence = array_merge($occurrence);
                     $thisOccurrence['model']['fields'][$attributes[0]['fieldname']] = array('value' => $values["{$uniqueId}:habitat-{$habitatIdx}"]);
                     $habitatOccurrences[$habitatId][] = $thisOccurrence;
                 }
             }
         }
     }
     // now create the submodel data for each habitat.
     $buddyPairSubmission['subModels'] = array();
     // copy the basic sample data into each set of habitat subsample values
     foreach ($habitatSamples as $habitatId => &$habitatSample) {
         $habitatIdx = str_replace('habitat', '', $habitatId);
         $habitatSample['website_id'] = $values['website_id'];
         $habitatSample['survey_id'] = $values['survey_id'];
         if (isset($_POST["habitat_sample_id:{$habitatIdx}"])) {
             $habitatSample['sample:id'] = $_POST["habitat_sample_id:{$habitatIdx}"];
         }
         $habitatSample['sample:date'] = $values['sample:date'];
         $habitatSample['sample:entered_sref'] = $values['sample:entered_sref'];
         $habitatSample['sample:entered_sref_system'] = $values['sample:entered_sref_system'];
         $habitatSample['sample:input_form'] = $values['sample:input_form'];
         if (isset($_POST["sample:comment:{$habitatIdx}"])) {
             $habitatSample['sample:comment'] = $_POST["sample:comment:{$habitatIdx}"];
             unset($buddyPairSubmission['fields']["comment:{$habitatIdx}"]);
         }
         $habitatSubmission = submission_builder::wrap_with_images($habitatSample, 'sample');
         if (!isset($habitatSubmission['subModels'])) {
             $habitatSubmission['subModels'] = array();
         }
         $habitatSubmission['subModels'] += $habitatOccurrences[$habitatId];
         $buddyPairSubmission['subModels'][] = array('fkId' => 'parent_id', 'model' => $habitatSubmission);
     }
     return $buddyPairSubmission;
 }