Example #1
0
 public function import(Sequence $sequence)
 {
     $id = $sequence->getNumericID();
     $data = $sequence->getData();
     $imported = $this->db->fetch('SELECT imported_at FROM sequence WHERE id = %i', [$id]);
     $imported = $imported ?: date('Y-m-d H:i:s');
     $this->db->delete('sequence', ['id' => $id]);
     $this->db->insert('sequence', ['id' => $id, 'name' => $data['name'], 'eois_id' => isset($data['identification']['EOIS']) ? $data['identification']['EOIS'] : null, 'hois_id' => isset($data['identification']['HOIS']) ? $data['identification']['HOIS'] : null, 'offset_a' => isset($data['offset'][0]) ? $data['offset'][0] : 0, 'offset_b' => isset($data['offset'][1]) ? $data['offset'][1] : 0, 'imported_at' => $imported, 'updated_at' => date('Y-m-d H:i:s'), 'worker' => null]);
     $this->db->insert('sequence_blob', ['sequence' => $id, 'name' => $data['name'], 'beginning' => implode(',', $data['beginning']), 'fulltext' => implode("\n", $sequence->getHTMLStrings())]);
     foreach (array_keys($data['keywords']) as $keyword) {
         $this->db->insert('sequence_keyword', ['sequence' => $id, 'keyword' => $keyword]);
     }
     foreach ($sequence->getUsers() as $slug => $name) {
         $this->db->insert('person', ['id' => $slug, 'name' => $name]);
         $this->db->insert('person_sequence', ['person' => $slug, 'sequence' => $id]);
     }
     foreach ($sequence->getSequences() as $mention) {
         $this->db->insert('mention', ['sequence' => $id, 'mentions' => $mention]);
     }
     foreach ($sequence->getCrossrefSequences() as $ref) {
         $this->db->insert('crossreference', ['from_sequence' => $id, 'to_sequence' => $ref]);
     }
 }
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU General Public License as published by  *
 *   the Free Software Foundation; either version 2 of the License, or     *
 *   (at your option) any later version.                                   *
 *                                                                         *
 ***************************************************************************/
include "prepend.inc.php";
$Server = getData("Server", "integer");
$User = getData("User");
$Sequencename = getData("Sequencename");
$html = "<H1> Database " . $DB->Name($Server) . " - Sequence " . $Sequencename . "</H1>";
if (isset($Sequencename)) {
    $seq = new Sequence($Server);
    $seq->setOwner($User);
    $seq->setName($Sequencename);
    $seq->getData();
    $html .= "<table border=0><tr><th>Last Number</th><th>Min Value</th><th>Max Value</th><th>Increment by</th><th>Cycle</th><th>Order</th><th>Cache Size</th></tr>";
    $html .= "<tr bgcolor=\"#DDDDDD\"><td>";
    $html .= $seq->lastnumber;
    $html .= "</td><td>";
    $html .= $seq->minval;
    $html .= "</td><td>";
    $html .= $seq->maxval;
    $html .= "</td><td>";
    $html .= $seq->incrementval;
    $html .= "</td><td>";
    $html .= $seq->cycleflag;
    $html .= "</td><td>";
    $html .= $seq->orderflag;
    $html .= "</td><td>";
    $html .= $seq->cachesize;