<?php
include "libSBML.php";
if ($argc < 3) {
echo "Usage: echoSBML input-filename output-filename";
exit(1);
}
$reader = new SBMLReader();
$doc = $reader->readSBMLFromFile($argv[1]);
if ($doc->getErrorLog()->getNumFailsWithSeverity(LIBSBML_SEV_ERROR) > 0) {
$doc->printErrors();
} else {
$writer = new SBMLWriter();
$writer->writeSBML($doc, $argv[2]);
}
?>
</apply>
</math>';
$astMath = libsbml::readMathMLFromString($mathXMLString);
$kl->setMath($astMath);
//---------------------------------------------------------------------------
// Creates local Parameter objects inside the KineticLaw object.
//---------------------------------------------------------------------------
// Creates a Parameter ("kcat")
$para = $kl->createParameter();
$para->setId("kcat");
$para->setValue(0.1);
$para->setUnits("per_second");
// Returns the created SBMLDocument object.
// The returned object must be explicitly deleted by the caller,
// otherwise a memory leak will happen.
return $sbmlDoc;
}
// create example model
$sbmlDoc = createExampleEnzymaticReaction();
// check consistency
$sbmlDoc->checkConsistency();
if ($sbmlDoc->getErrorLog()->getNumFailsWithSeverity(LIBSBML_SEV_ERROR) > 0) {
echo "file is not valid!";
$sbmlDoc->printErrors();
}
// write file
$writer = new SBMLWriter();
$writer->writeSBML($sbmlDoc, "enzymaticreaction.xml");
?>