function validateSBML($file, $enableUnitCheck)
{
echo "validating: {$file}\n";
$reader = new SBMLReader();
$doc = $reader->readSBMLFromFile($file);
$log = $doc->getErrorLog();
$numFatals = $log->getNumFailsWithSeverity(LIBSBML_SEV_FATAL);
$numErrors = $log->getNumFailsWithSeverity(LIBSBML_SEV_ERROR);
if ($numFatals + $numErrors > 0) {
$doc->printErrors();
echo "Further consistency checking and validation aborted.\n";
return FALSE;
}
$doc->setConsistencyChecks(LIBSBML_CAT_UNITS_CONSISTENCY, $enableUnitCheck);
$failures = $doc->checkConsistency();
$numFatals = $log->getNumFailsWithSeverity(LIBSBML_SEV_FATAL);
$numErrors = $log->getNumFailsWithSeverity(LIBSBML_SEV_ERROR);
if ($failures > 0) {
echo "\n*** consistency check ***\n";
$doc->printErrors();
}
if ($numFatals + $numErrors > 0) {
return FALSE;
}
return True;
}
<?php
include "libSBML.php";
if ($argc < 3) {
echo "Usage: echoSBML input-filename output-filename";
exit(1);
}
$reader = new SBMLReader();
$doc = $reader->readSBMLFromFile($argv[1]);
if ($doc->getErrorLog()->getNumFailsWithSeverity(LIBSBML_SEV_ERROR) > 0) {
$doc->printErrors();
} else {
$writer = new SBMLWriter();
$writer->writeSBML($doc, $argv[2]);
}
?>
