/**
* Create a new token and return it.
*/
public static function create()
{
$value = uniqid();
$tokenObject = new Token();
$tokenObject->value = $value;
Mapper::add($tokenObject);
return $value;
}
/**
*/
public static function add($userID, $tagName, $tagColor)
{
$tagObject = new Tag();
$tagObject->user_id = $userID;
$tagObject->name = $tagName;
$tagObject->color = $tagColor;
$tagsID = Mapper::add($tagObject);
$tags = '';
// loop through results and create html
$n = new Template('feed_tag.html');
$n->replace('USER_ID', $userID);
$n->replace('TAG_ID', $tagsID);
$n->replace('TAG_NAME', $tagName);
$n->replace('TAG_COLOR', $tagColor);
$n->replace('TEXT_COLOR', invertColor($tagColor));
$n->replace('LOCATION', 'inmodal');
$tags .= $n;
return array('tagshtml' => $tags, 'tags' => $tagsID);
}
public function update_map(Mapper $mapper)
{
$mapper->add('issue', $this->old_id_, $this->new_id_);
}
public static function AddStudy(&$db, &$process_file, &$study_chris_id, &$study_description)
{
$db->lock('study', 'WRITE');
// Does data exist: SeriesInstanceUID
if (array_key_exists('StudyInstanceUID', $process_file)) {
// does study exist??
$studyMapper = new Mapper('Study');
$studyMapper->filter('uid = (?)', $process_file['StudyInstanceUID'][0]);
$studyResult = $studyMapper->get();
// if study doesn't exist, create it
if (count($studyResult['Study']) == 0) {
// create object
// create data model
$studyObject = new Study();
//
// get data uid
//
$studyObject->uid = $process_file['StudyInstanceUID'][0];
//
// get data name (series description)
//
if (array_key_exists('StudyDescription', $process_file)) {
$studyObject->description = sanitize($process_file['StudyDescription'][0]);
} else {
$studyObject->description = 'NoStudyDescription';
}
if (array_key_exists('Modality', $process_file)) {
$studyObject->modality = sanitize($process_file['Modality'][0]);
} else {
$studyObject->modality = 'NoModality';
}
if (array_key_exists('StudyDate', $process_file)) {
$studyObject->date = PACS::getDate($process_file);
}
$studyObject->age = PACS::getAge($process_file);
$studyObject->location = PACS::getLocation($process_file);
$study_description = formatStudy($studyObject->date, $studyObject->age, $studyObject->description);
$study_chris_id = Mapper::add($studyObject);
} else {
// Content to be updated
if ($studyResult['Study'][0]->age == -1) {
//
// get data name (series description)
//
if (array_key_exists('StudyDescription', $process_file)) {
$studyResult['Study'][0]->description = sanitize($process_file['StudyDescription'][0]);
} else {
$studyResult['Study'][0]->description = 'NoStudyDescription';
}
if (array_key_exists('Modality', $process_file)) {
$studyResult['Study'][0]->modality = sanitize($process_file['Modality'][0]);
} else {
$studyResult['Study'][0]->modality = 'NoModality';
}
$studyResult['Study'][0]->date = PACS::getDate($process_file);
$studyResult['Study'][0]->age = PACS::getAge($process_file);
$studyResult['Study'][0]->location = PACS::getLocation($process_file);
$study_description = formatStudy($studyResult['Study'][0]->date, $studyResult['Study'][0]->age, $studyResult['Study'][0]->description);
$study_chris_id = $studyResult['Study'][0]->id;
Mapper::update($studyResult['Study'][0], $studyResult['Study'][0]->id);
} else {
$study_chris_id = $studyResult['Study'][0]->id;
$study_description = formatStudy($studyResult['Study'][0]->date, $studyResult['Study'][0]->age, $studyResult['Study'][0]->description);
}
}
} else {
echo 'Study UID not provided in DICOM file' . PHP_EOL;
// finish data table lock
$db->unlock();
return 0;
}
// finish data table lock
$db->unlock();
return 1;
}
public static function tag($feedid, $tagid, $remove)
{
if ($remove == 'false') {
// is tag feed already?
$feedtagMapper = new Mapper('Feed_Tag');
$feedtagMapper->filter('feed_id=(?)', $feedid);
$feedtagMapper->filter('tag_id=(?)', $tagid);
$feedtadResults = $feedtagMapper->get();
if (count($feedtadResults['Feed_Tag']) >= 1) {
return -1;
}
$tagObject = new Feed_Tag();
$tagObject->feed_id = $feedid;
$tagObject->tag_id = $tagid;
return Mapper::add($tagObject);
} else {
// is tag feed already?
$feedtagMapper = new Mapper('Feed_Tag');
$feedtagMapper->filter('feed_id=(?)', $feedid);
$feedtagMapper->filter('tag_id=(?)', $tagid);
$feedtadResults = $feedtagMapper->get();
if (count($feedtadResults['Feed_Tag']) >= 1) {
Mapper::delete('Feed_Tag', $feedtadResults['Feed_Tag'][0]->id);
return 1;
}
return -1;
}
}
public function testUpdate()
{
// get a patient by id
$patientObject = new Patient();
$patientObject->name = 'PLN2';
$patientObject->dob = '2002-01-01';
$patientObject->sex = 'F';
$patientObject->uid = 'PID2;';
$patientID = Mapper::add($patientObject);
// Modify one field
$patientObject->name = 'PLN3';
// Update database and get object
Mapper::update($patientObject, $patientID);
$patientResult = Mapper::getStatic('Patient', $patientID);
// compared object we just added with its "base" object
// we make sure id match
$patientObject->id = $patientID;
$this->assertTrue($patientResult['Patient'][0]->equals($patientObject) == True);
// update "silly" object to create one object which alread exists
$existingID = Mapper::update($patientObject, -1);
// should return the id of the object which already exists
$this->assertTrue($patientID == $existingID);
//update object that does not exist
$patientObject->name = 'PLN4';
$existingID = Mapper::update($patientObject, -1);
// update should return 0 if object does not exist
$this->assertTrue($existingID == 0);
// clean the DB
Mapper::delete('Patient', $patientID);
}
/**
* Add record
*
* @param array $values
* @return int
*/
public static function add(array $values)
{
return Mapper::add(get_called_class(), $values);
}
$study_chris_id = Mapper::add($studyObject);
$addDataLog .= 'Study created..' . PHP_EOL;
} else {
$study_chris_id = $studyResult['Study'][0]->id;
$addDataLog .= 'Study already exists..' . PHP_EOL;
}
// MAP DATA TO STUDY
$dataStudyMapper = new Mapper('Data_Study');
$dataStudyMapper->filter('data_id = (?)', $data_chris_id);
$dataStudyMapper->filter('study_id = (?)', $study_chris_id);
$dataStudyResult = $dataStudyMapper->get();
if (count($dataStudyResult['Data_Study']) == 0) {
$dataStudyObject = new Data_Study();
$dataStudyObject->data_id = $data_chris_id;
$dataStudyObject->study_id = $study_chris_id;
Mapper::add($dataStudyObject);
$addDataLog .= 'Map data to its study...' . PHP_EOL;
}
// move series (data)
$try = 0;
while ($request_data && $try < 5) {
$pacs2 = new PACS($server, $port, $aetitle, $aec);
echo $server . PHP_EOL;
echo $port . PHP_EOL;
echo $aetitle . PHP_EOL;
$pacs2->addParameter('StudyInstanceUID', $results[1]['StudyInstanceUID'][$key]);
$pacs2->addParameter('SeriesInstanceUID', $results[1]['SeriesInstanceUID'][$key]);
$push_request = $pacs2->moveSeries();
$addDataLog .= $push_request['command'] . PHP_EOL;
if ($push_request['output'] == '') {
$addDataLog .= 'Move data success...' . PHP_EOL;
$mapping_id = Mapper::add($dataPatientObject);
$logFile .= 'patient data id: ' . $mapping_id . PHP_EOL;
} else {
$logFile .= 'Patient already mapped to data...' . PHP_EOL;
$logFile .= 'patient data id: ' . $dataPatientResult['Data_Patient'][0]->id . PHP_EOL;
}
// MAP DATA TO STUDY
$dataStudyMapper = new Mapper('Data_Study');
$dataStudyMapper->filter('data_id = (?)', $data_chris_id);
$dataStudyMapper->filter('study_id = (?)', $study_chris_id);
$dataStudyResult = $dataStudyMapper->get();
if (count($dataStudyResult['Data_Study']) == 0) {
$dataStudyObject = new Data_Study();
$dataStudyObject->data_id = $data_chris_id;
$dataStudyObject->study_id = $study_chris_id;
$mapping_data_study_id = Mapper::add($dataStudyObject);
$logFile .= 'data study id: ' . $mapping_data_study_id . PHP_EOL;
} else {
$logFile .= 'Study already mapped to data...' . PHP_EOL;
$logFile .= 'data study id: ' . $dataStudyResult['Data_Study'][0]->id . PHP_EOL;
}
// FILESYSTEM Processing
//
// Create the patient directory
//
$logFile .= '**** FILESYSTEM processing ****' . PHP_EOL;
$patientdirname = CHRIS_DATA . '/' . $process_file['PatientID'][0] . '-' . $patient_chris_id;
// create folder if doesnt exists
if (!is_dir($patientdirname)) {
mkdir($patientdirname);
$logFile .= 'MKDIR: ' . $patientdirname . PHP_EOL;
/**
* Create a new user.
*
* @param string $username
* @param string $password
* @param string $email
*/
public static function create($uid, $username)
{
// create user and add it to db
$userObject = new User();
$userObject->id = strval($uid);
$userObject->username = $username;
$userObject->password = '******';
$userObject->email = $username . CHRIS_MAIL_SUFFIX;
return Mapper::add($userObject);
}
