$sViewListID = 'Genes_SubmitVOT' . ($_GET['target'] ? '_' . $_GET['target'] : '');
$aOptionsList = array('width' => 600);
$aOptionsList['options'][0]['onclick'] = 'javascript:$(\'#container\').toggle(); lovd_stretchInputs(\'' . $sViewListID . '\');';
$aOptionsList['options'][0]['option_text'] = '<B>A variant that is located within a gene »»</B>';
$aOptionsList['options'][1]['onclick'] = 'variants?create&reference=Genome' . ($_GET['target'] ? '&target=' . $_GET['target'] : '');
$aOptionsList['options'][1]['option_text'] = '<B>A variant that was only described on genomic level »»</B>';
if ($_AUTH['level'] >= LEVEL_MANAGER) {
$aOptionsList['options'][2]['onclick'] = 'variants/upload?create' . ($_GET['target'] ? '&target=' . $_GET['target'] : '');
$aOptionsList['options'][2]['option_text'] = '<B>I want to upload a file with genomic variant data »»</B>';
}
print ' What kind of variant would you like to submit?<BR><BR>' . "\n\n";
print lovd_buildOptionTable($aOptionsList);
require ROOT_PATH . 'class/object_genes.php';
$_GET['page_size'] = 10;
$_DATA = new LOVD_Gene();
$_DATA->setRowLink($sViewListID, 'variants?create&reference=Transcript&geneid=' . $_DATA->sRowID . ($_GET['target'] ? '&target=' . $_GET['target'] : ''));
$_GET['search_transcripts'] = '>0';
print ' <DIV id="container" style="display : none;">' . "\n";
// Extra div is to prevent "No entries in the database yet!" error to show up if there are no genes in the database yet.
lovd_showInfoTable('Please find the gene for which you wish to submit this variant below, using the search fields if needed. <B>Click on the gene to proceed to the variant entry form</B>.<BR>If a gene is not shown in this display, but it does exist in this LOVD, then it does not have a transcript configured yet.', 'information', 600);
$_DATA->viewList($sViewListID, array('transcripts', 'variants', 'diseases_', 'updated_date_'));
print ' </DIV>' . "\n" . (!$bSubmit ? '' : ' <INPUT type="submit" value="Cancel" onclick="window.location.href=\'' . lovd_getInstallURL() . 'submit/screening/' . $_POST['screeningid'] . '\'; return false;" style="border : 1px solid #FF4422;">' . "\n");
$_T->printFooter();
exit;
} elseif (!in_array($_GET['reference'], array('Genome', 'Transcript')) || $_GET['reference'] == 'Transcript' && empty($_GET['geneid'])) {
exit;
}
// URL: /variants?create&reference=('Genome'|'Transcript')
// Create a variant on the genome.
if ($_GET['reference'] == 'Transcript') {
// On purpose not checking for format of $_GET['geneid']. If it's not right, we'll automatically get to the error message below.
