Example #1
0
 /**
  * @param string $alias
  * @throws BaseModuleDialogMethodNotFoundException
  * @throws BaseModuleDialogClassNotFoundException
  * @throws BaseModuleDialogFileNotFoundException
  * @throws BaseModuleDialogMissingException
  * @throws ProjectSecurityAccessDeniedException
  * @throws BaseModuleDialogNotFoundException
  * @throws ItemAddIOClassNotFoundException
  * @throws ItemAddIOFileNotFoundException
  * @throws ItemHandlerClassNotFoundException
  * @throws ItemPositionIDMissingException
  * @throws ItemParentIDMissingException
  * @throws ItemParentTypeMissingException
  * @throws ProjectStatusWithoutExtensionException
  * @throws BaseExtensionClassNotFoundException
  * @throws BaseExtensionFileNotFoundException
  * @throws BaseExtensionNotFoundException
  * @throws BaseExtensionMissingException
  */
 public static function io_handler($alias)
 {
     global $project_security, $session, $transaction;
     if (isset($_GET['project_id']) and is_numeric($_GET['project_id'])) {
         $project_security = new ProjectSecurity($_GET['project_id']);
         if ($_GET['run'] != "new_subproject") {
             require_once "io/project_common.io.php";
             ProjectCommon_IO::tab_header();
         }
     } else {
         $project_security = new ProjectSecurity(null);
     }
     if (isset($_GET['run'])) {
         switch ($_GET['run']) {
             case "new":
             case "new_subproject":
                 require_once "io/project.io.php";
                 ProjectIO::create();
                 break;
             case "myprojects":
             case "workon":
             case "accessdata":
             case "analyse":
                 require_once "io/project.io.php";
                 ProjectIO::list_user_related_projects(null);
                 break;
             case "userprojects":
                 require_once "io/project.io.php";
                 ProjectIO::list_user_related_projects($_GET['id']);
                 break;
             case "organ_unit":
                 require_once "io/project.io.php";
                 ProjectIO::list_organisation_unit_related_projects();
                 break;
             case "detail":
                 require_once "io/project.io.php";
                 ProjectIO::detail();
                 break;
             case "structure":
                 require_once "io/project.io.php";
                 ProjectIO::structure();
                 break;
                 // Project Log
             // Project Log
             case "log":
                 require_once "io/project_log.io.php";
                 ProjectLogIO::list_project_related_logs();
                 break;
                 // Tasks and Schedule
             // Tasks and Schedule
             case "add_task":
                 require_once "io/project_task.io.php";
                 ProjectTaskIO::add();
                 break;
             case "schedule":
             case "show_tasks":
                 require_once "io/project_task.io.php";
                 ProjectTaskIO::show();
                 break;
             case "task_detail":
                 require_once "io/project_task.io.php";
                 ProjectTaskIO::detail();
                 break;
             case "task_delete":
                 require_once "io/project_task.io.php";
                 ProjectTaskIO::delete();
                 break;
             case "task_edit_start":
                 require_once "io/project_task.io.php";
                 ProjectTaskIO::edit_start();
                 break;
             case "task_edit_end":
                 require_once "io/project_task.io.php";
                 ProjectTaskIO::edit_end();
                 break;
                 // Administration
             // Administration
             case "admin":
                 require_once "io/project_admin.io.php";
                 ProjectAdminIO::menu();
                 break;
             case "admin_rename":
                 require_once "io/project_admin.io.php";
                 ProjectAdminIO::rename();
                 break;
             case "admin_chown":
                 require_once "io/project_admin.io.php";
                 ProjectAdminIO::chown();
                 break;
             case "admin_move":
                 require_once "io/project_admin.io.php";
                 ProjectAdminIO::move();
                 break;
             case "admin_quota":
                 require_once "io/project_admin.io.php";
                 ProjectAdminIO::quota();
                 break;
                 // Administration - Permission
             // Administration - Permission
             case "admin_permission":
                 require_once "io/project_admin.io.php";
                 $project_admin_io = new ProjectAdminIO();
                 ProjectAdminIO::permission();
                 break;
             case "admin_permission_add_user":
                 require_once "io/project_admin.io.php";
                 ProjectAdminIO::permission_add_user();
                 break;
             case "admin_permission_add_group":
                 require_once "io/project_admin.io.php";
                 ProjectAdminIO::permission_add_group();
                 break;
             case "admin_permission_add_ou":
                 require_once "io/project_admin.io.php";
                 ProjectAdminIO::permission_add_organisation_unit();
                 break;
             case "admin_permission_edit":
                 require_once "io/project_admin.io.php";
                 ProjectAdminIO::permission_edit();
                 break;
             case "admin_permission_delete":
                 require_once "io/project_admin.io.php";
                 ProjectAdminIO::permission_delete();
                 break;
                 // Item Lister
             // Item Lister
             case "item_list":
                 if ($project_security->is_access(1, false) == true) {
                     if ($_GET['dialog']) {
                         if ($_GET['dialog'] == "data") {
                             $path_stack_array = array();
                             $folder_id = ProjectFolder::get_folder_by_project_id($_GET['project_id']);
                             $folder = Folder::get_instance($folder_id);
                             $init_array = $folder->get_object_id_path();
                             foreach ($init_array as $key => $value) {
                                 $temp_array = array();
                                 $temp_array['virtual'] = false;
                                 $temp_array['id'] = $value;
                                 array_unshift($path_stack_array, $temp_array);
                             }
                             if (!$_GET['folder_id']) {
                                 $session->write_value("stack_array", $path_stack_array, true);
                             }
                         }
                         $module_dialog = ModuleDialog::get_by_type_and_internal_name("item_list", $_GET['dialog']);
                         if (file_exists($module_dialog['class_path'])) {
                             require_once $module_dialog['class_path'];
                             if (class_exists($module_dialog['class'])) {
                                 if (method_exists($module_dialog['class'], $module_dialog['method'])) {
                                     $module_dialog['class']::$module_dialog['method']("project", $_GET['project_id'], true);
                                 } else {
                                     throw new BaseModuleDialogMethodNotFoundException();
                                 }
                             } else {
                                 throw new BaseModuleDialogClassNotFoundException();
                             }
                         } else {
                             throw new BaseModuleDialogFileNotFoundException();
                         }
                     } else {
                         throw new BaseModuleDialogMissingException();
                     }
                 } else {
                     throw new ProjectSecurityAccessDeniedException();
                 }
                 break;
                 // Item Add
             // Item Add
             case "item_add":
             case "item_edit":
                 if ($project_security->is_access(3, false) == true) {
                     if ($_GET['dialog']) {
                         if ($_GET['run'] == "item_add") {
                             $module_dialog = ModuleDialog::get_by_type_and_internal_name("item_add", $_GET['dialog']);
                         } elseif ($_GET['run'] == "item_edit") {
                             $module_dialog = ModuleDialog::get_by_type_and_internal_name("item_edit", $_GET['dialog']);
                         }
                         if (is_array($module_dialog) and $module_dialog['class_path']) {
                             if (file_exists($module_dialog['class_path'])) {
                                 require_once $module_dialog['class_path'];
                                 if (class_exists($module_dialog['class'])) {
                                     if (method_exists($module_dialog['class'], $module_dialog['method'])) {
                                         $project = new Project($_GET['project_id']);
                                         $project_item = new ProjectItem($_GET['project_id']);
                                         $project_item->set_status_id($project->get_current_status_id());
                                         $project_item->set_gid($_GET['key']);
                                         $description_required = $project_item->is_description_required();
                                         $keywords_required = $project_item->is_keywords_required();
                                         if ($description_required and !$_POST['description'] and !$_GET['idk_unique_id'] or $keywords_required and !$_POST['keywords'] and !$_GET['idk_unique_id']) {
                                             require_once "core/modules/item/io/item.io.php";
                                             ItemIO::information(http_build_query($_GET), $description_required, $keywords_required);
                                         } else {
                                             $current_status_requirements = $project->get_current_status_requirements($project->get_current_status_id());
                                             if ($_GET['run'] == "item_add") {
                                                 $module_dialog['class']::$module_dialog['method']($current_status_requirements[$_GET['key']]['type_id'], $current_status_requirements[$_GET['key']]['category_id'], "Project", $_GET['project_id'], $_GET['key']);
                                             } elseif ($_GET['run'] == "item_edit") {
                                                 $module_dialog['class']::$module_dialog['method']($current_status_requirements[$_GET['key']]['fulfilled'][0]['item_id']);
                                             }
                                         }
                                     } else {
                                         throw new BaseModuleDialogMethodNotFoundException();
                                     }
                                 } else {
                                     throw new BaseModuleDialogClassNotFoundException();
                                 }
                             } else {
                                 throw new BaseModuleDialogFileNotFoundException();
                             }
                         } else {
                             throw new BaseModuleDialogNotFoundException();
                         }
                     } else {
                         throw new BaseModuleDialogMissingException();
                     }
                 } else {
                     throw new ProjectSecurityAccessDeniedException();
                 }
                 break;
                 // Sub Item Add and Edit
             // Sub Item Add and Edit
             case "sub_item_add":
             case "sub_item_edit":
                 if ($project_security->is_access(3, false) == true) {
                     if ($_GET['parent']) {
                         if (is_numeric($_GET['parent_id'])) {
                             if (is_numeric($_GET['key'])) {
                                 $item_handling_class = Item::get_handling_class_by_type($_GET['parent']);
                                 if (class_exists($item_handling_class)) {
                                     $item_io_handling_class = $item_handling_class::get_item_add_io_handling_class();
                                     if (file_exists("core/modules/" . $item_io_handling_class[0])) {
                                         require_once "core/modules/" . $item_io_handling_class[0];
                                         if (class_exists($item_io_handling_class[1])) {
                                             if ($_GET['run'] == "sub_item_add") {
                                                 $item_io_handling_class[1]::item_add_edit_handler("add");
                                             } elseif ($_GET['run'] == "sub_item_edit") {
                                                 $item_io_handling_class[1]::item_add_edit_handler("edit");
                                             }
                                         } else {
                                             throw new ItemAddIOClassNotFoundException();
                                         }
                                     } else {
                                         throw new ItemAddIOFileNotFoundException();
                                     }
                                 } else {
                                     throw new ItemHandlerClassNotFoundException();
                                 }
                             } else {
                                 throw new ItemPositionIDMissingException();
                             }
                         } else {
                             throw new ItemParentIDMissingException();
                         }
                     } else {
                         throw new ItemParentTypeMissingException();
                     }
                 } else {
                     throw new ProjectSecurityAccessDeniedException();
                 }
                 break;
                 // Extension
                 /**
                  * @todo type filter
                  */
             // Extension
             /**
              * @todo type filter
              */
             case "extension":
                 if ($_GET['extension']) {
                     $extension_id = Extension::get_id_by_identifier($_GET['extension']);
                     if ($extension_id) {
                         $extension = new Extension($extension_id);
                         $main_file = constant("EXTENSION_DIR") . "/" . $extension->get_folder() . "/" . $extension->get_main_file();
                         $main_class = $extension->get_class();
                         if (file_exists($main_file)) {
                             require_once $main_file;
                             if (class_exists($main_class)) {
                                 $project = new Project($_GET['project_id']);
                                 $project_item = new ProjectItem($_GET['project_id']);
                                 $project_status_requirements = $project->get_current_status_requirements();
                                 if (is_array($project_status_requirements) and count($project_status_requirements) >= 1) {
                                     foreach ($project_status_requirements as $key => $value) {
                                         if ($value['element_type'] == "extension" and $value['extension'] == $_GET['extension']) {
                                             if (is_array($value['filter']) and count($value['filter']) >= 1) {
                                                 $filter_array = $value['filter'];
                                             } else {
                                                 $filter_array = null;
                                             }
                                             break;
                                         }
                                     }
                                 } else {
                                     throw new ProjectStatusWithoutExtensionException();
                                 }
                                 if ($filter_array) {
                                     $item_array = array();
                                     foreach ($filter_array as $key => $value) {
                                         if (is_numeric($value['status'])) {
                                             $item_array = array_merge($item_array, $project_item->get_project_status_items($value['status'], true));
                                         }
                                     }
                                 } else {
                                     $item_array = $project_item->get_project_items(true);
                                 }
                                 $event_identifier = uniqid("", true);
                                 if ($session->is_value("PROJECT_EXTENSION_EVENT_IDENTIFIER_ARRAY")) {
                                     $project_extension_event_identifier_array = $session->read_value("PROJECT_EXTENSION_EVENT_IDENTIFIER_ARRAY");
                                     $project_extension_event_identifier_array[$event_identifier] = $_GET['project_id'];
                                 } else {
                                     $project_extension_event_identifier_array = array();
                                     $project_extension_event_identifier_array[$event_identifier] = $_GET['project_id'];
                                 }
                                 $session->write_value("PROJECT_EXTENSION_EVENT_IDENTIFIER_ARRAY", $project_extension_event_identifier_array);
                                 $main_class::set_event_identifier($event_identifier);
                                 $main_class::set_target_folder_id(ProjectStatusFolder::get_folder_by_project_id_and_project_status_id($_GET['project_id'], $project->get_current_status_id()));
                                 $main_class::push_data($item_array);
                             } else {
                                 throw new BaseExtensionClassNotFoundException();
                             }
                         } else {
                             throw new BaseExtensionFileNotFoundException();
                         }
                     } else {
                         throw new BaseExtensionNotFoundException();
                     }
                 } else {
                     throw new BaseExtensionMissingException();
                 }
                 break;
                 // Common Dialogs
             // Common Dialogs
             case "common_dialog":
                 require_once "core/modules/base/common.request.php";
                 CommonRequest::common_dialog();
                 break;
                 // Default
             // Default
             default:
                 require_once "io/project.io.php";
                 ProjectIO::list_user_related_projects(null);
                 break;
         }
     } else {
         require_once "io/project.io.php";
         ProjectIO::list_user_related_projects(null);
     }
 }
Example #2
0
 /**
  * @param string $alias
  * @throws SampleSecurityAccessDeniedException
  * @throws BaseModuleDialogMethodNotFoundException
  * @throws BaseModuleDialogClassNotFoundException
  * @throws BaseModuleDialogFileNotFoundException
  * @throws BaseModuleDialogMissingException
  * @throws BaseModuleDialogNotFoundException
  * @throws ItemAddIOClassNotFoundException
  * @throws ItemAddIOFileNotFoundException
  * @throws ItemHandlerClassNotFoundException
  * @throws ItemPositionIDMissingException
  * @throws ItemParentIDMissingException
  * @throws ItemParentTypeMissingException
  */
 public static function io_handler($alias)
 {
     global $sample_security, $session, $transaction;
     if ($_GET['sample_id']) {
         $sample_security = new SampleSecurity($_GET['sample_id']);
         require_once "io/sample_common.io.php";
         SampleCommon_IO::tab_header();
     } else {
         $sample_security = new SampleSecurity(null);
     }
     switch ($_GET['run']) {
         case "new":
         case "new_subsample":
             require_once "io/sample.io.php";
             SampleIO::create();
             break;
         case "clone":
             require_once "io/sample.io.php";
             SampleIO::clone_sample();
             break;
         case "organ_unit":
             require_once "io/sample.io.php";
             SampleIO::list_organisation_unit_related_samples();
             break;
         case "detail":
             require_once "io/sample.io.php";
             SampleIO::detail();
             break;
         case "move":
             require_once "io/sample.io.php";
             SampleIO::move();
             break;
         case "set_availability":
             require_once "io/sample.io.php";
             SampleIO::set_availability();
             break;
         case "location_history":
             require_once "io/sample.io.php";
             SampleIO::location_history();
             break;
             // Administration
         // Administration
         case "delete":
             require_once "io/sample_admin.io.php";
             SampleAdminIO::delete();
             break;
         case "rename":
             require_once "io/sample_admin.io.php";
             SampleAdminIO::rename();
             break;
         case "admin_permission_user":
             require_once "io/sample_admin.io.php";
             SampleAdminIO::user_permission();
             break;
         case "admin_permission_user_add":
             require_once "io/sample_admin.io.php";
             SampleAdminIO::user_permission_add();
             break;
         case "admin_permission_user_delete":
             require_once "io/sample_admin.io.php";
             SampleAdminIO::user_permission_delete();
             break;
         case "admin_permission_ou":
             require_once "io/sample_admin.io.php";
             SampleAdminIO::ou_permission();
             break;
         case "admin_permission_ou_add":
             require_once "io/sample_admin.io.php";
             SampleAdminIO::ou_permission_add();
             break;
         case "admin_permission_ou_delete":
             require_once "io/sample_admin.io.php";
             SampleAdminIO::ou_permission_delete();
             break;
             // Item Lister
         // Item Lister
         case "item_list":
             if ($sample_security->is_access(1, false) == true) {
                 if ($_GET['dialog']) {
                     if ($_GET['dialog'] == "data") {
                         $path_stack_array = array();
                         $folder_id = SampleFolder::get_folder_by_sample_id($_GET['sample_id']);
                         $folder = Folder::get_instance($folder_id);
                         $init_array = $folder->get_object_id_path();
                         foreach ($init_array as $key => $value) {
                             $temp_array = array();
                             $temp_array['virtual'] = false;
                             $temp_array['id'] = $value;
                             array_unshift($path_stack_array, $temp_array);
                         }
                         if (!$_GET['folder_id']) {
                             $session->write_value("stack_array", $path_stack_array, true);
                         }
                     }
                     $module_dialog = ModuleDialog::get_by_type_and_internal_name("item_list", $_GET['dialog']);
                     if (file_exists($module_dialog['class_path'])) {
                         require_once $module_dialog['class_path'];
                         if (class_exists($module_dialog['class'])) {
                             if (method_exists($module_dialog['class'], $module_dialog['method'])) {
                                 $module_dialog['class']::$module_dialog['method']("sample", $_GET['sample_id'], true, false);
                             } else {
                                 throw new BaseModuleDialogMethodNotFoundException();
                             }
                         } else {
                             throw new BaseModuleDialogClassNotFoundException();
                         }
                     } else {
                         throw new BaseModuleDialogFileNotFoundException();
                     }
                 } else {
                     throw new BaseModuleDialogMissingException();
                 }
             } else {
                 throw new SampleSecurityAccessDeniedException();
             }
             break;
         case "item_add":
         case "item_edit":
             if ($sample_security->is_access(2, false) == true) {
                 if ($_GET['dialog']) {
                     if ($_GET['run'] == "item_add") {
                         $module_dialog = ModuleDialog::get_by_type_and_internal_name("item_add", $_GET['dialog']);
                     } elseif ($_GET['run'] == "item_edit") {
                         $module_dialog = ModuleDialog::get_by_type_and_internal_name("item_edit", $_GET['dialog']);
                     }
                     if (is_array($module_dialog) and $module_dialog['class_path']) {
                         if (file_exists($module_dialog['class_path'])) {
                             require_once $module_dialog['class_path'];
                             if (class_exists($module_dialog['class'])) {
                                 if (method_exists($module_dialog['class'], $module_dialog['method'])) {
                                     $sample_item = new SampleItem($_GET['sample_id']);
                                     $sample_item->set_gid($_GET['key']);
                                     $description_required = $sample_item->is_description_required();
                                     $keywords_required = $sample_item->is_keywords_required();
                                     if ($description_required and !$_POST['description'] and !$_GET['idk_unique_id'] or $keywords_required and !$_POST['keywords'] and !$_GET['idk_unique_id']) {
                                         require_once "core/modules/item/io/item.io.php";
                                         ItemIO::information(http_build_query($_GET), $description_required, $keywords_required);
                                     } else {
                                         $sample = new Sample($_GET['sample_id']);
                                         $current_requirements = $sample->get_requirements();
                                         if ($_GET['run'] == "item_add") {
                                             $module_dialog['class']::$module_dialog['method']($current_requirements[$_GET['key']]['type_id'], $current_requirements[$_GET['key']]['category_id'], "Sample", $_GET['sample_id'], $_GET['key']);
                                         } elseif ($_GET['run'] == "item_edit") {
                                             $module_dialog['class']::$module_dialog['method']($current_requirements[$_GET['key']]['fulfilled'][0]['item_id']);
                                         }
                                     }
                                 } else {
                                     throw new BaseModuleDialogMethodNotFoundException();
                                 }
                             } else {
                                 throw new BaseModuleDialogClassNotFoundException();
                             }
                         } else {
                             throw new BaseModuleDialogFileNotFoundException();
                         }
                     } else {
                         throw new BaseModuleDialogNotFoundException();
                     }
                 } else {
                     throw new BaseModuleDialogMissingException();
                 }
             } else {
                 throw new SampleSecurityAccessDeniedException();
             }
             break;
             // Sub Item Add
         // Sub Item Add
         case "sub_item_add":
         case "sub_item_edit":
             if ($sample_security->is_access(2, false) == true) {
                 if ($_GET['parent']) {
                     if (is_numeric($_GET['parent_id'])) {
                         if (is_numeric($_GET['key'])) {
                             $item_handling_class = Item::get_handling_class_by_type($_GET['parent']);
                             if (class_exists($item_handling_class)) {
                                 $item_io_handling_class = $item_handling_class::get_item_add_io_handling_class();
                                 if (file_exists("core/modules/" . $item_io_handling_class[0])) {
                                     require_once "core/modules/" . $item_io_handling_class[0];
                                     if (class_exists($item_io_handling_class[1])) {
                                         if ($_GET['run'] == "sub_item_add") {
                                             $item_io_handling_class[1]::item_add_edit_handler("add");
                                         } else {
                                             $item_io_handling_class[1]::item_add_edit_handler("edit");
                                         }
                                     } else {
                                         throw new ItemAddIOClassNotFoundException();
                                     }
                                 } else {
                                     throw new ItemAddIOFileNotFoundException();
                                 }
                             } else {
                                 throw new ItemHandlerClassNotFoundException();
                             }
                         } else {
                             throw new ItemPositionIDMissingException();
                         }
                     } else {
                         throw new ItemParentIDMissingException();
                     }
                 } else {
                     throw new ItemParentTypeMissingException();
                 }
             } else {
                 throw new SampleSecurityAccessDeniedException();
             }
             break;
             // Parent Item Lister
         // Parent Item Lister
         case "parent_item_list":
             if ($sample_security->is_access(1, false) == true) {
                 if ($_GET['dialog']) {
                     $sample = new Sample($_GET['sample_id']);
                     $item_id = $sample->get_item_id();
                     $module_dialog = ModuleDialog::get_by_type_and_internal_name("parent_item_list", $_GET['dialog']);
                     if (file_exists($module_dialog['class_path'])) {
                         require_once $module_dialog['class_path'];
                         if (class_exists($module_dialog['class'])) {
                             if (method_exists($module_dialog['class'], $module_dialog['method'])) {
                                 $module_dialog['class']::$module_dialog['method']($item_id);
                             } else {
                                 throw new BaseModuleDialogMethodNotFoundException();
                             }
                         } else {
                             throw new BaseModuleDialogClassNotFoundException();
                         }
                     } else {
                         throw new BaseModuleDialogFileNotFoundException();
                     }
                 } else {
                     throw new BaseModuleDialogMissingException();
                 }
             } else {
                 throw new SampleSecurityAccessDeniedException();
             }
             break;
             // Common Dialogs
         // Common Dialogs
         case "common_dialog":
             require_once "core/modules/base/common.request.php";
             CommonRequest::common_dialog();
             break;
         default:
             require_once "io/sample.io.php";
             SampleIO::list_user_related_samples();
             break;
     }
 }