function generate_EnvEOL_data()
{
require_library('connectors/IUCNRedlistDataConnector');
$func = new IUCNRedlistDataConnector();
$basenames = array("eol_env_annotations_noParentTerms");
// list of needed basenames
$options = $this->download_options;
$options['expire_seconds'] = 2592000 * 3;
// 3 months before cache expires
$text_path = $func->load_zip_contents($this->species_list_export, $options, $basenames, ".tsv");
print_r($text_path);
self::csv_to_array($text_path[$basenames[0]]);
$this->archive_builder->finalize(TRUE);
// remove temp dir
$parts = pathinfo($text_path[$basenames[0]]);
recursive_rmdir($parts["dirname"]);
debug("\n temporary directory removed: " . $parts["dirname"]);
recursive_rmdir($this->TEMP_DIR);
// comment this if u want to check "need_to_check_tc_id.txt"
/* run problematic tc_ids with cache=0 --- a utility
$tc_ids = self::get_dump();
foreach($tc_ids as $tc_id)
{
$rec['taxon_id'] = $tc_id;
self::prepare_taxon($rec);
}
exit("\n-exit-\n");
*/
}
private function access_raw_data()
{
require_library('connectors/IUCNRedlistDataConnector');
$func = new IUCNRedlistDataConnector();
$basenames = array("tnames_OBIS", "ranges_OBIS");
// csv files: taxa file, data file respectively
$this->text_path["obis"] = $func->load_zip_contents($this->obis_csv_zip_file, $this->download_options, $basenames, ".csv");
$this->text_path["worms"] = $func->load_zip_contents($this->worms_taxon_tab_zip_file, $this->download_options, array("worms_taxon"), ".tab");
print_r($this->text_path);
$this->worms_taxa = self::get_worms_taxa();
}
namespace php_active_record;
/*
execution time: 3 hours when HTTP request is already cached
Connector processes a CSV file exported from the IUCN portal (www.iucnredlist.org).
The exported CSV file is requested and is generated by the portal a couple of days afterwards.
The completion is confirmed via email to the person who requested it.
To be harvestd quarterly: https://jira.eol.org/browse/WEB-5427
#==== 8 PM, 25th of the month, quarterly (Feb, May, Aug, Nov) => IUCN Structured Data
00 20 25 2,5,8,11 * /usr/bin/php /opt/eol_php_code/update_resources/connectors/737.php > /dev/null
taxon measurementorfact
2014 05 27 73,465 533,549
2014 08 14 76,022 554,047
increase 2,557 20,498
*/
include_once dirname(__FILE__) . "/../../config/environment.php";
require_library('connectors/IUCNRedlistDataConnector');
$timestart = time_elapsed();
$resource_id = 737;
$func = new IUCNRedlistDataConnector($resource_id);
$func->generate_IUCN_data();
Functions::finalize_dwca_resource($resource_id);
$elapsed_time_sec = time_elapsed() - $timestart;
echo "\n\n";
echo "\n elapsed time = " . $elapsed_time_sec . " seconds";
echo "\n elapsed time = " . $elapsed_time_sec / 60 . " minutes";
echo "\n elapsed time = " . $elapsed_time_sec / 60 / 60 . " hours";
echo "\n Done processing.\n";
