public function createAction() { $expId = intval($this->getRequest()->getParam(Expertise::COL_ID)); $keyId = intval($this->getRequest()->getParam(KeyTable::COL_ID)); $expTable = new Expertise(); $expRow = $expTable->find($expId); $keyTable = new KeyTable(); $keyRow = $keyTable->find($keyId); if ($keyRow->count() != 0 || $expRow->count() != 0) { $keyArray = $keyRow->toArray(); $expArray = $expRow->toArray(); // create CE row $ceTable = new CalibrationExercise(); $ceName = $expArray[0][Expertise::COL_SPECIES] . ' / ' . AuthQuery::getUserName(); //TODO \r in der Datenbank $ceDescription = 'Area: ' . $expArray[0][Expertise::COL_AREA] . '\\r' . 'Subject: ' . $expArray[0][Expertise::COL_SUBJECT] . '\\r' . 'KeyName: ' . $keyArray[0][KeyTable::COL_NAME]; $ceData = array(CalibrationExercise::COL_NAME => $ceName, CalibrationExercise::COL_DESCRIPTION => $ceDescription, CalibrationExercise::COL_KEY_TABLE_ID => $keyArray[0][KeyTable::COL_ID], CalibrationExercise::COL_EXPERTISE_ID => $expArray[0][Expertise::COL_ID], CalibrationExercise::COL_COMPAREABLE => 1, CalibrationExercise::COL_IS_STOPPED => 0, CalibrationExercise::COL_TRAINING => 1); $ceId = $ceTable->insert($ceData); // create participant row $partTable = new Participant(); $partData = array(Participant::COL_CE_ID => $ceId, Participant::COL_USER_ID => AuthQuery::getUserId(), Participant::COL_NUMBER => 1); $partId = $partTable->insert($partData); // add all possible shown attributes $dbAdapter = $ceTable->getAdapter(); $selectAttr = $dbAdapter->select(); $selectAttr->from(AttributeDescriptor::TABLE_NAME); $selectAttr->orWhere(AttributeDescriptor::COL_GROUP . '=?', 'fish'); $selectAttr->orWhere(AttributeDescriptor::COL_GROUP . '=?', 'image'); $attrArray = $dbAdapter->fetchAll($selectAttr); $ceHasAttrTable = new CeHasAttributeDescriptor(); foreach ($attrArray as $attr) { $attrData = array(CeHasAttributeDescriptor::COL_ATDE_ID => $attr[AttributeDescriptor::COL_ID], CeHasAttributeDescriptor::COL_CAEX_ID => $ceId); $ceHasAttrTable->insert($attrData); } //get images for exp/key $refQuery = new Default_ReferenceQuery(); $images = $refQuery->getImages($expId, $keyId); // create imageset // $selectImages = $dbAdapter->select(); // $imagesArray = $dbAdapter->fetchAll($selectImages); $imageSetTable = new CeHasImage(); foreach ($images as $image) { $data = array(CeHasImage::COL_IMAGE_ID => $image, CeHasImage::COL_CALIBRATION_EXERCISE_ID => $ceId); $imageSetTable->insert($data); } //$this->render('form'); $Redirect = new Zend_Controller_Action_Helper_Redirector(); $Redirect->setGotoSimple('index', 'make', 'annotation', array(CalibrationExercise::COL_ID => $ceId)); } else { throw new Zend_Controller_Exception('Error at craeting a new training Calibration Exercise.', 505); } }
/** * grouping function * checks the CSV file and prepares the datasets for import, and gives detailled arrays back for single steps for further processing and report * 1. checks the CSV file column against uploaded files * 2. checks the header * 3. checks the columns with value list entries and changes from strings to ids * 4. splits and checks the datasets against fish and image form * @param $key the subdirectory for csv and image files * @param $systemAttributes INPUT from flex assigning, elements order is 1:1 to csvHeadings * @param $csvHeadings INPUT from flex assigning, elements order is 1:1 to systemAttributes * @param $filenames filenames of files to upload, including import.csv * @return unknown_type */ public function checkCsv($key, $systemAttributes, $csvHeadings, $filenames) { $this->key = $key; $this->logger = new Ble422_ArrayLogger(self::RELATIVE_PATH_IMPORT_LOGS . $this->key . '_import_log.txt'); try { $parser = new Ble422_CsvParser(self::RELATIVE_PATH_UPLOAD_CACHE . $this->key . '/import.csv', TRUE, ',', NULL, TRUE); } catch (Exception $e) { return array('returnCode' => 'initial error', 'message' => $e->getMessage); } //print_r($this->parser->getHeadings()); $headings = $parser->getHeadings(); if (count($headings) <= 1) { return array('returnCode' => 'initial error', 'message' => 'Error: zero or only one heading found, wrong delitimer?'); } $datasets = array(); $datasets = $parser->get(0); if (empty($datasets)) { return array('returnCode' => 'initial error', 'message' => 'Error: no dataset found'); } if (empty($filenames)) { return array('returnCode' => 'initial error', 'message' => 'Error: no filenames found'); } //echo $this->datasets[0]['Über2']; //echo $this->datasets[1]['Über3']; if (count($systemAttributes) >= 1 && count($csvHeadings) >= 1) { $useManualAssociation = TRUE; if (count($systemAttributes) != count($csvHeadings)) { return array('returnCode' => 'initial error', 'message' => 'Error: number of system attributes and CSV file headings not equal'); } //delete the additional information from the attribute string foreach ($systemAttributes as &$attr) { $pos = strrpos($attr, '#'); if ($pos === false) { // not found } else { //- 1 because space sign $attr = substr($attr, 0, $pos - 1); } } //$headingsArray = $this->createHeadingsArray(); $datasets = $this->getDatasetsWithNewHeadings($datasets, $systemAttributes, $csvHeadings); $headings = $systemAttributes; } else { $useManualAssociation = FALSE; } //additional array (keys without spaces) for xml XXX has no recursive handling -------------- $datasetsForXml = array(); foreach ($datasets as $rowNo => $dataset) { $newDataset = array(); foreach ($dataset as $keyName => $value) { $newKeyName = str_replace(' ', '_', $keyName); $newDataset += array($newKeyName => $value); } $datasetsForXml[$rowNo] = $newDataset; } //---------------------------------------------------------- $this->logger->log(array('user' => AuthQuery::getUserName())); $this->logger->log(array('originalInput' => $datasets)); //XXX handle association array added info try { if (!$useManualAssociation) { $fileNamesCsv = $this->extractColumn($datasets, Image::COL_ORIGINAL_FILENAME); } else { $fileNamesCsv = $this->extractColumn($datasets, Image::COL_ORIGINAL_FILENAME); } } catch (OutOfBoundsException $e) { return array('returnCode' => 'initial error', 'message' => "Error: column not found\n" . $e->getMessage); } try { $this->extractColumn($datasets, Fish::COL_SAMPLE_CODE); } catch (OutOfBoundsException $e) { return array('returnCode' => 'initial error', 'message' => "Error: column not found\n" . $e->getMessage); } $resultsCheckFileCsvAssoc = $this->checkFileCsvAssoc($fileNamesCsv, $filenames); $this->logger->log($resultsCheckFileCsvAssoc, 'resultsCheckFileCsvAssoc'); $this->rowHasUniqueUploadedFile = $resultsCheckFileCsvAssoc['rowHasUniqueUploadedFile']; $fishBaseAttr = array(Fish::COL_SAMPLE_CODE); $imageBaseAttr = array(Image::COL_ORIGINAL_FILENAME, Image::COL_RATIO_EXTERNAL); $meta = new Default_MetaData(); $attribRowset = array_merge($fishBaseAttr, $meta->getAttributesBasic('FISH'), $imageBaseAttr, $meta->getAttributesBasic('IMAGE')); $resultsCheckHeader = $this->checkHeader($headings, $attribRowset); $this->logger->log($resultsCheckHeader, 'resultsCheckHeader'); //print_r($resultsCheckHeader); $this->matchingCols = $resultsCheckHeader['matchingColumns']; //get matching columns which have value list attributes $matchingColsWithValuelist = $resultsCheckHeader['matchingColumns']; foreach ($matchingColsWithValuelist as $key => $match) { if (is_array($match)) { //meta data if ($match[AttributeDescriptor::COL_VALUE_LIST] == 0) { unset($matchingColsWithValuelist[$key]); } } else { //base date unset($matchingColsWithValuelist[$key]); } } $attribRowsetWithValuelist = array_merge($meta->getAttributesAndValuelist('FISH'), $meta->getAttributesAndValuelist('IMAGE')); $resultsCheckValuelistCells = $this->checkValuelistCells($datasets, $matchingColsWithValuelist, $attribRowsetWithValuelist); $this->logger->log($resultsCheckValuelistCells, 'resultsCheckValuelistCells'); // //additional array (keys without spaces) for xml -------------- // //copy the array // $resultsCheckValuelistCellsForXml = array(); // foreach ($resultsCheckValuelistCells as $key => $val) { // $resultsCheckValuelistCellsForXml[$key] = $val; // } // //replace the subarray 'modifiedDatasets' // foreach ($resultsCheckValuelistCells['modifiedDatasets'] as $rowNo => $attrValPair) { // $newDataset = array(); // foreach ($attrValPair as $keyName => $value) { // $newKeyName = str_replace(' ', '_', $keyName); // $newDataset += array($newKeyName => $value); // } // $resultsCheckValuelistCellsForXml['modifiedDatasets'][$rowNo] = $newDataset; // } // // //---------------------------------------------------------- $modifiedDatasets = $resultsCheckValuelistCells['modifiedDatasets']; //function gets matching cols from member variable $resultsValidateAgainstForms = $this->validateAgainstForms($modifiedDatasets); $this->logger->log($resultsValidateAgainstForms, 'resultsValidateAgainstForms'); //set member array preparedDatasets = all successful validated datasets $validRows = $resultsValidateAgainstForms['validRows']; $preparedDatasets = array(); foreach ($validRows as $rowNo => $dataset) { $preparedDatasets[$rowNo]['fishFormDataset'] = $resultsValidateAgainstForms['fishFormDatasets'][$rowNo]; $preparedDatasets[$rowNo]['imageFormDataset'] = $resultsValidateAgainstForms['imageFormDatasets'][$rowNo]; //XXX append original filename out of original datasets //$preparedDatasets[$rowNo][Image::COL_ORIGINAL_FILENAME] = $datasets[$rowNo][Image::COL_ORIGINAL_FILENAME]; } $this->preparedDatasets = $preparedDatasets; $this->logger->log($this->preparedDatasets, 'preparedDatasets'); $resultsCheckDatasetsAgainstDatabase = $this->checkDatasetsAgainstDatabase($datasets); $this->logger->log($resultsCheckDatasetsAgainstDatabase, 'resultsCheckDatasetsAgainstDatabase'); //aggregate returnCodes $returnCode = ''; if ($resultsCheckFileCsvAssoc['returnCode'] == 'warning' || $resultsCheckHeader['returnCode'] == 'warning' || $resultsCheckValuelistCells['returnCode'] == 'warning' || $resultsValidateAgainstForms['returnCode'] == 'warning' || $resultsCheckDatasetsAgainstDatabase['returnCode'] == 'warning') { $returnCode = 'warning'; } if ($resultsCheckFileCsvAssoc['returnCode'] == 'error' || $resultsCheckHeader['returnCode'] == 'error' || $resultsCheckValuelistCells['returnCode'] == 'error' || $resultsValidateAgainstForms['returnCode'] == 'error' || $resultsCheckDatasetsAgainstDatabase['returnCode'] == 'error') { $returnCode = 'error'; } if ($returnCode == '') { $returnCode = 'success'; } $resultsCheckFileCsvAssocForXml = $this->reduceCheckResultForXml($resultsCheckFileCsvAssoc); $resultsCheckHeaderForXml = $this->reduceCheckResultForXml($resultsCheckHeader); $resultsCheckValuelistCellsForXml = $this->reduceCheckResultForXml($resultsCheckValuelistCells); $resultsValidateAgainstFormsForXml = $this->reduceCheckResultForXml($resultsValidateAgainstForms); $resultsCheckDatasetsAgainstDatabaseForXml = $this->reduceCheckResultForXml($resultsCheckDatasetsAgainstDatabase); // //give upload process the valid unique filenames // $resultsCheckFileCsvAssocForXml['rowHasUniqueUploadedFile'] = $this->rowHasUniqueUploadedFile; $result = array('returnCode' => $returnCode, 'originalInput' => $datasetsForXml, 'resultsCheckFileCsvAssoc' => $resultsCheckFileCsvAssocForXml, 'resultsCheckHeader' => $resultsCheckHeaderForXml, 'resultsCheckValuelistCells' => $resultsCheckValuelistCellsForXml, 'resultsValidateAgainstForms' => $resultsValidateAgainstFormsForXml, 'resultsCheckDatasetsAgainstDatabase' => $resultsCheckDatasetsAgainstDatabaseForXml); // print_r($result); // print_r($this->preparedDatasets); $this->saveToNamespace(); return $result; }