/**
* Add a new event log entry with the specified parameters, including log level.
* @param $articleId int
* @param $logLevel char
* @param $eventType int
* @param $assocType int
* @param $assocId int
* @param $messageKey string
* @param $messageParams array
*/
function logEventLevel($articleId, $logLevel, $eventType, $assocType = 0, $assocId = 0, $messageKey = null, $messageParams = array())
{
$entry = new ArticleEventLogEntry();
$entry->setLogLevel($logLevel);
$entry->setEventType($eventType);
$entry->setAssocType($assocType);
$entry->setAssocId($assocId);
if (isset($messageKey)) {
$entry->setLogMessage($messageKey, $messageParams);
}
return ArticleLog::logEventEntry($articleId, $entry);
}
/**
* Internal function to return an ArticleEventLogEntry object from a row.
* @param $row array
* @return ArticleEventLogEntry
*/
function &_returnLogEntryFromRow(&$row)
{
$entry = new ArticleEventLogEntry();
$entry->setId($row['log_id']);
$entry->setArticleId($row['article_id']);
$entry->setUserId($row['user_id']);
$entry->setDateLogged($this->datetimeFromDB($row['date_logged']));
$entry->setIPAddress($row['ip_address']);
$entry->setLogLevel($row['log_level']);
$entry->setEventType($row['event_type']);
$entry->setAssocType($row['assoc_type']);
$entry->setAssocId($row['assoc_id']);
$entry->setMessage($row['message']);
HookRegistry::call('ArticleEventLogDAO::_returnLogEntryFromRow', array(&$entry, &$row));
return $entry;
}
/**
* Upload the annotated version of an article.
* @param $reviewId int
*/
function uploadReviewerVersion($reviewId)
{
import('classes.file.ArticleFileManager');
$reviewAssignmentDao =& DAORegistry::getDAO('ReviewAssignmentDAO');
$sectionDecisionDao =& DAORegistry::getDAO('SectionDecisionDAO');
$reviewAssignment =& $reviewAssignmentDao->getById($reviewId);
$sectionDecision =& $sectionDecisionDao->getSectionDecision($reviewAssignment->getDecisionId());
$articleFileManager = new ArticleFileManager($sectionDecision->getArticleId());
// Only upload the file if the reviewer has yet to submit a recommendation
// and if review forms are not used
if (($reviewAssignment->getRecommendation() === null || $reviewAssignment->getRecommendation() === '') && !$reviewAssignment->getCancelled()) {
$fileName = 'upload';
if ($articleFileManager->uploadedFileExists($fileName)) {
// Check if file already uploaded
$reviewFile =& $reviewAssignment->getReviewerFile();
if ($reviewFile != null) {
$articleFileManager->deleteFile($reviewFile->getFileId());
}
HookRegistry::call('ReviewerAction::uploadReviewFile', array(&$reviewAssignment));
if ($reviewAssignment->getReviewerFileId() != null) {
$fileId = $articleFileManager->uploadReviewFile($fileName, $reviewAssignment->getDecisionId(), $reviewAssignment->getReviewerFileId());
} else {
$fileId = $articleFileManager->uploadReviewFile($fileName, $reviewAssignment->getDecisionId());
}
}
}
if (isset($fileId) && $fileId != 0) {
$reviewAssignment->setReviewerFileId($fileId);
$reviewAssignment->stampModified();
$reviewAssignmentDao->updateReviewAssignment($reviewAssignment);
// Add log
import('classes.article.log.ArticleLog');
import('classes.article.log.ArticleEventLogEntry');
$userDao =& DAORegistry::getDAO('UserDAO');
$reviewer =& $userDao->getUser($reviewAssignment->getReviewerId());
$entry = new ArticleEventLogEntry();
$entry->setArticleId($sectionDecision->getArticleId());
$entry->setUserId($reviewer->getId());
$entry->setDateLogged(Core::getCurrentDate());
$entry->setEventType(ARTICLE_LOG_REVIEW_FILE);
$entry->setLogLevel('N');
$entry->setLogMessage('log.review.reviewerFile');
$entry->setAssocType(ARTICLE_LOG_TYPE_REVIEW);
$entry->setAssocId($reviewAssignment->getId());
ArticleLog::logEventEntry($sectionDecision->getArticleId(), $entry);
//Send a notification to section editors
import('lib.pkp.classes.notification.NotificationManager');
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$article =& $articleDao->getArticle($sectionDecision->getArticleId());
$notificationManager = new NotificationManager();
$notificationUsers = $article->getAssociatedUserIds(false, false);
$user =& Request::getUser();
$message = $article->getProposalId() . ':<br/>' . $user->getUsername();
foreach ($notificationUsers as $userRole) {
$url = Request::url(null, $userRole['role'], 'submission', array($article->getId(), 'submissionReview'), null, 'peerReview');
$notificationManager->createNotification($userRole['id'], 'notification.type.reviewerFile', $message, $url, 1, NOTIFICATION_TYPE_REVIEWER_COMMENT);
}
}
}
/**
* Upload the copyedited version of an article.
* @param $copyeditorSubmission object
*/
function uploadCopyeditVersion($copyeditorSubmission, $copyeditStage)
{
import('classes.file.ArticleFileManager');
$articleFileDao =& DAORegistry::getDAO('ArticleFileDAO');
$copyeditorSubmissionDao =& DAORegistry::getDAO('CopyeditorSubmissionDAO');
$signoffDao =& DAORegistry::getDAO('SignoffDAO');
if ($copyeditStage == 'initial') {
$signoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $copyeditorSubmission->getArticleId());
} else {
if ($copyeditStage == 'final') {
$signoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $copyeditorSubmission->getArticleId());
}
}
// Only allow an upload if they're in the initial or final copyediting
// stages.
if ($copyeditStage == 'initial' && ($signoff->getDateNotified() == null || $signoff->getDateCompleted() != null)) {
return;
} else {
if ($copyeditStage == 'final' && ($signoff->getDateNotified() == null || $signoff->getDateCompleted() != null)) {
return;
} else {
if ($copyeditStage != 'initial' && $copyeditStage != 'final') {
return;
}
}
}
$articleFileManager = new ArticleFileManager($copyeditorSubmission->getArticleId());
$user =& Request::getUser();
$fileName = 'upload';
if ($articleFileManager->uploadedFileExists($fileName)) {
HookRegistry::call('CopyeditorAction::uploadCopyeditVersion', array(&$copyeditorSubmission));
if ($signoff->getFileId() != null) {
$fileId = $articleFileManager->uploadCopyeditFile($fileName, $copyeditorSubmission->getFileBySignoffType('SIGNOFF_COPYEDITING_INITIAL', true));
} else {
$fileId = $articleFileManager->uploadCopyeditFile($fileName);
}
}
if (isset($fileId) && $fileId != 0) {
$signoff->setFileId($fileId);
$signoff->setFileRevision($articleFileDao->getRevisionNumber($fileId));
$signoffDao->updateObject($signoff);
// Add log
import('classes.article.log.ArticleLog');
import('classes.article.log.ArticleEventLogEntry');
$entry = new ArticleEventLogEntry();
$entry->setArticleId($copyeditorSubmission->getArticleId());
$entry->setUserId($user->getId());
$entry->setDateLogged(Core::getCurrentDate());
$entry->setEventType(ARTICLE_LOG_COPYEDIT_COPYEDITOR_FILE);
$entry->setLogMessage('log.copyedit.copyeditorFile');
$entry->setAssocType(ARTICLE_LOG_TYPE_COPYEDIT);
$entry->setAssocId($fileId);
ArticleLog::logEventEntry($copyeditorSubmission->getArticleId(), $entry);
}
}
function importArticles()
{
assert($this->xml->name == 'articles');
$articleDAO =& DAORegistry::getDAO('ArticleDAO');
$articles = $articleDAO->getArticlesByJournalId($this->journal->getId());
$journalFileManager = new JournalFileManager($this->journal);
$publicFileManager =& new PublicFileManager();
$this->nextElement();
while ($this->xml->name == 'article') {
$articleXML = $this->getCurrentElementAsDom();
$article = new Article();
$article->setJournalId($this->journal->getId());
$article->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleXML->userId));
$article->setSectionId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_SECTION, (int) $articleXML->sectionId));
$article->setLocale((string) $articleXML->locale);
$article->setLanguage((string) $articleXML->language);
$article->setCommentsToEditor((string) $articleXML->commentsToEditor);
$article->setCitations((string) $articleXML->citations);
$article->setDateSubmitted((string) $articleXML->dateSubmitted);
$article->setDateStatusModified((string) $articleXML->dateStatusModified);
$article->setLastModified((string) $articleXML->lastModified);
$article->setStatus((int) $articleXML->status);
$article->setSubmissionProgress((int) $articleXML->submissionProgress);
$article->setCurrentRound((int) $articleXML->currentRound);
$article->setPages((string) $articleXML->pages);
$article->setFastTracked((int) $articleXML->fastTracked);
$article->setHideAuthor((int) $articleXML->hideAuthor);
$article->setCommentsStatus((int) $articleXML->commentsStatus);
$articleDAO->insertArticle($article);
$oldArticleId = (int) $articleXML->oldId;
$this->restoreDataObjectSettings($articleDAO, $articleXML->settings, 'article_settings', 'article_id', $article->getId());
$article =& $articleDAO->getArticle($article->getId());
// Reload article with restored settings
$covers = $article->getFileName(null);
if ($covers) {
foreach ($covers as $locale => $oldCoverFileName) {
$sourceFile = $this->publicFolderPath . '/' . $oldCoverFileName;
$extension = $publicFileManager->getExtension($oldCoverFileName);
$destFile = 'cover_issue_' . $article->getId() . "_{$locale}.{$extension}";
$publicFileManager->copyJournalFile($this->journal->getId(), $sourceFile, $destFile);
unlink($sourceFile);
$article->setFileName($destFile, $locale);
$articleDAO->updateArticle($article);
}
}
$articleFileManager = new ArticleFileManager($article->getId());
$authorDAO =& DAORegistry::getDAO('AuthorDAO');
foreach ($articleXML->author as $authorXML) {
$author = new Author();
$author->setArticleId($article->getId());
$author->setFirstName((string) $authorXML->firstName);
$author->setMiddleName((string) $authorXML->middleName);
$author->setLastName((string) $authorXML->lastName);
$author->setSuffix((string) $authorXML->suffix);
$author->setCountry((string) $authorXML->country);
$author->setEmail((string) $authorXML->email);
$author->setUrl((string) $authorXML->url);
$author->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $authorXML->userGroupId));
$author->setPrimaryContact((int) $authorXML->primaryContact);
$author->setSequence((int) $authorXML->sequence);
$authorDAO->insertAuthor($author);
$this->restoreDataObjectSettings($authorDAO, $authorXML->settings, 'author_settings', 'author_id', $author->getId());
unset($author);
}
$articleEmailLogDAO =& DAORegistry::getDAO('ArticleEmailLogDAO');
$emailLogsXML = array();
foreach ($articleXML->emailLogs->emailLog as $emailLogXML) {
array_unshift($emailLogsXML, $emailLogXML);
}
foreach ($emailLogsXML as $emailLogXML) {
$emailLog = new ArticleEmailLogEntry();
$emailLog->setAssocType(ASSOC_TYPE_ARTICLE);
$emailLog->setAssocId($article->getId());
$emailLog->setSenderId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $emailLogXML->senderId));
$emailLog->setDateSent((string) $emailLogXML->dateSent);
$emailLog->setIPAddress((string) $emailLogXML->IPAddress);
$emailLog->setEventType((int) $emailLogXML->eventType);
$emailLog->setFrom((string) $emailLogXML->from);
$emailLog->setRecipients((string) $emailLogXML->recipients);
$emailLog->setCcs((string) $emailLogXML->ccs);
$emailLog->setBccs((string) $emailLogXML->bccs);
$emailLog->setSubject((string) $emailLogXML->subject);
$emailLog->setBody((string) $emailLogXML->body);
$articleEmailLogDAO->insertObject($emailLog);
$this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $emailLogXML->oldId, $emailLog->getId());
}
$articleFileDAO =& DAORegistry::getDAO('ArticleFileDAO');
foreach ($articleXML->articleFile as $articleFileXML) {
try {
$articleFile = new ArticleFile();
$articleFile->setArticleId($article->getId());
$articleFile->setSourceFileId((int) $articleFileXML->sourceFileId);
$articleFile->setSourceRevision((int) $articleFileXML->sourceRevision);
$articleFile->setRevision((int) $articleFileXML->revision);
$articleFile->setFileName((string) $articleFileXML->fileName);
$articleFile->setFileType((string) $articleFileXML->fileType);
$articleFile->setFileSize((string) $articleFileXML->fileSize);
$articleFile->setOriginalFileName((string) $articleFileXML->originalFileName);
$articleFile->setFileStage((int) $articleFileXML->fileStage);
$articleFile->setAssocId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $articleFileXML->assocId));
$articleFile->setDateUploaded((string) $articleFileXML->dateUploaded);
$articleFile->setDateModified((string) $articleFileXML->dateModified);
$articleFile->setRound((int) $articleFileXML->round);
$articleFile->setViewable((int) $articleFileXML->viewable);
$articleFileDAO->insertArticleFile($articleFile);
$oldArticleFileId = (int) $articleFileXML->oldId;
$oldFileName = $articleFile->getFileName();
$stagePath = $articleFileManager->fileStageToPath($articleFile->getFileStage());
$fileInTransferPackage = $this->journalFolderPath . "/articles/{$oldArticleId}/{$stagePath}/{$oldFileName}";
$newFileName = $articleFileManager->generateFilename($articleFile, $articleFile->getFileStage(), $articleFile->getOriginalFileName());
$newFilePath = "/articles/" . $article->getId() . "/{$stagePath}/{$newFileName}";
$journalFileManager->copyFile($fileInTransferPackage, $journalFileManager->filesDir . $newFilePath);
unlink($fileInTransferPackage);
$articleFileDAO->updateArticleFile($articleFile);
$this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $oldArticleFileId, $articleFile->getFileId());
} catch (Exception $e) {
}
}
$articleFiles = $articleFileDAO->getArticleFilesByArticle($article->getId());
foreach ($articleFiles as $articleFile) {
try {
$articleFile->setSourceFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $articleFile->getSourceFileId()));
$articleFileDAO->updateArticleFile($articleFile);
} catch (Exception $e) {
}
}
$suppFileDAO =& DAORegistry::getDAO('SuppFileDAO');
foreach ($articleXML->suppFile as $suppFileXML) {
$suppFile =& new SuppFile();
$suppFile->setArticleId($article->getId());
$suppFile->setRemoteURL((string) $suppFileXML->remoteURL);
$suppFile->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $suppFileXML->fileId));
$suppFile->setType((string) $suppFileXML->type);
$suppFile->setDateCreated((string) $suppFileXML->dateCreated);
$suppFile->setLanguage((string) $suppFileXML->language);
$suppFile->setShowReviewers((int) $suppFileXML->showReviewers);
$suppFile->setDateSubmitted((string) $suppFileXML->dateSubmitted);
$suppFile->setSequence((int) $suppFileXML->sequence);
$suppFileDAO->insertSuppFile($suppFile);
$this->restoreDataObjectSettings($suppFileDAO, $suppFileXML->settings, 'article_supp_file_settings', 'supp_id', $suppFile->getId());
}
$articleCommentDAO =& DAORegistry::getDAO('ArticleCommentDAO');
foreach ($articleXML->articleComment as $articleCommentXML) {
$articleComment = new ArticleComment();
$articleComment->setArticleId($article->getId());
$articleComment->setAssocId($article->getId());
$articleComment->setCommentType((int) $articleCommentXML->commentType);
$articleComment->setRoleId((int) $articleCommentXML->roleId);
$articleComment->setAuthorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleCommentXML->authorId));
$articleComment->setCommentTitle((string) $articleCommentXML->commentTitle);
$articleComment->setComments((string) $articleCommentXML->comments);
$articleComment->setDatePosted((string) $articleCommentXML->datePosted);
$articleComment->setDateModified((string) $articleCommentXML->dateModified);
$articleComment->setViewable((int) $articleCommentXML->viewable);
$articleCommentDAO->insertArticleComment($articleComment);
}
$articleGalleyDAO =& DAORegistry::getDAO('ArticleGalleyDAO');
foreach ($articleXML->articleGalley as $articleGalleyXML) {
$articleGalley = null;
if ($articleGalleyXML->htmlGalley == "1") {
$articleGalley = new ArticleHTMLGalley();
} else {
$articleGalley = new ArticleGalley();
}
$articleGalley->setArticleId($article->getId());
$articleGalley->setLocale((string) $articleGalleyXML->locale);
$articleGalley->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->fileId));
$articleGalley->setLabel((string) $articleGalleyXML->label);
$articleGalley->setSequence((int) $articleGalleyXML->sequence);
$articleGalley->setRemoteURL((string) $articleGalleyXML->remoteURL);
if ($articleGalley instanceof ArticleHTMLGalley) {
$articleGalley->setStyleFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->styleFileId));
}
$articleGalleyDAO->insertGalley($articleGalley);
if ($articleGalley instanceof ArticleHTMLGalley) {
foreach ($articleGalleyXML->htmlGalleyImage as $articleGalleyImageXML) {
$imageId = $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyImageXML);
$articleGalleyDAO->insertGalleyImage($articleGalley->getId(), $imageId);
}
}
$this->restoreDataObjectSettings($articleGalleyDAO, $articleGalleyXML->settings, 'article_galley_settings', 'galley_id', $articleGalley->getId());
}
$noteDAO =& DAORegistry::getDAO('NoteDAO');
foreach ($articleXML->articleNote as $articleNoteXML) {
$articleNote = new Note();
$articleNote->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleNoteXML->userId));
$articleNote->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleNoteXML->fileId));
$articleNote->setAssocType(ASSOC_TYPE_ARTICLE);
$articleNote->setAssocId($article->getId());
$articleNote->setDateCreated((string) $articleNoteXML->dateCreated);
$articleNote->setDateModified((string) $articleNoteXML->dateModified);
$articleNote->setContents((string) $articleNoteXML->contents);
$articleNote->setTitle((string) $articleNoteXML->title);
$noteDAO->insertObject($articleNote);
}
$editAssignmentDAO =& DAORegistry::getDAO('EditAssignmentDAO');
foreach ($articleXML->editAssignment as $editAssignmentXML) {
$editAssignment = new EditAssignment();
$editAssignment->setArticleId($article->getId());
$editAssignment->setEditorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editAssignmentXML->editorId));
$editAssignment->setCanReview((int) $editAssignmentXML->canReview);
$editAssignment->setCanEdit((int) $editAssignmentXML->canEdit);
$editAssignment->setDateUnderway((string) $editAssignmentXML->dateUnderway);
$editAssignment->setDateNotified((string) $editAssignmentXML->dateNotified);
$editAssignmentDAO->insertEditAssignment($editAssignment);
}
$reviewAssignmentDAO =& DAORegistry::getDAO('ReviewAssignmentDAO');
$reviewFormResponseDAO =& DAORegistry::getDAO('ReviewFormResponseDAO');
foreach ($articleXML->reviewAssignment as $reviewAssignmentXML) {
$reviewAssignment = new ReviewAssignment();
$reviewAssignment->setSubmissionId($article->getId());
$reviewAssignment->setReviewerId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $reviewAssignmentXML->reviewerId));
try {
$reviewAssignment->setReviewerFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $reviewAssignmentXML->reviewerFileId));
} catch (Exception $e) {
$this->logger->log("Arquivo do artigo {$oldArticleId} não encontrado. ID: " . (int) $reviewAssignmentXML->reviewerFileId . "\n");
}
$reviewAssignment->setReviewFormId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM, (int) $reviewAssignmentXML->reviewFormId));
$reviewAssignment->setReviewRoundId((int) $reviewAssignmentXML->reviewRoundId);
$reviewAssignment->setStageId((int) $reviewAssignmentXML->stageId);
$reviewAssignment->setReviewerFullName((string) $reviewAssignmentXML->reviewerFullName);
$reviewAssignment->setCompetingInterests((string) $reviewAssignmentXML->competingInterests);
$reviewAssignment->setRegretMessage((string) $reviewAssignmentXML->regretMessage);
$reviewAssignment->setRecommendation((string) $reviewAssignmentXML->recommendation);
$reviewAssignment->setDateAssigned((string) $reviewAssignmentXML->dateAssigned);
$reviewAssignment->setDateNotified((string) $reviewAssignmentXML->dateNotified);
$reviewAssignment->setDateConfirmed((string) $reviewAssignmentXML->dateConfirmed);
$reviewAssignment->setDateCompleted((string) $reviewAssignmentXML->dateCompleted);
$reviewAssignment->setDateAcknowledged((string) $reviewAssignmentXML->dateAcknowledged);
$reviewAssignment->setDateDue((string) $reviewAssignmentXML->dateDue);
$reviewAssignment->setDateResponseDue((string) $reviewAssignmentXML->dateResponseDue);
$reviewAssignment->setLastModified((string) $reviewAssignmentXML->lastModified);
$reviewAssignment->setDeclined((int) $reviewAssignmentXML->declined);
$reviewAssignment->setReplaced((int) $reviewAssignmentXML->replaced);
$reviewAssignment->setCancelled((int) $reviewAssignmentXML->cancelled);
$reviewAssignment->setQuality((int) $reviewAssignmentXML->quality);
$reviewAssignment->setDateRated((string) $reviewAssignmentXML->dateRated);
$reviewAssignment->setDateReminded((string) $reviewAssignmentXML->dateReminded);
$reviewAssignment->setReminderWasAutomatic((int) $reviewAssignmentXML->reminderWasAutomatic);
$reviewAssignment->setRound((int) $reviewAssignmentXML->round);
$reviewAssignment->setReviewRevision((int) $reviewAssignmentXML->reviewRevision);
$reviewAssignment->setReviewMethod((int) $reviewAssignmentXML->reviewMethod);
$reviewAssignment->setUnconsidered((int) $reviewAssignmentXML->unconsidered);
$reviewAssignmentDAO->insertObject($reviewAssignment);
foreach ($reviewAssignmentXML->formResponses->formResponse as $formResponseXML) {
$reviewFormResponseDAO->update('INSERT INTO review_form_responses
(review_form_element_id, review_id, response_type, response_value)
VALUES
(?, ?, ?, ?)', array($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM_ELEMENT, (int) $formResponseXML->reviewFormElementId), $reviewAssignment->getId(), (string) $formResponseXML->responseType, (string) $formResponseXML->responseValue));
}
}
$signoffDAO =& DAORegistry::getDAO('SignoffDAO');
foreach ($articleXML->signoff as $signoffXML) {
$signoff = new Signoff();
$signoff->setAssocType(ASSOC_TYPE_ARTICLE);
$signoff->setAssocId($article->getId());
$signoff->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $signoffXML->userId));
$signoff->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $signoffXML->fileId));
$signoff->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $signoffXML->userGroupId));
$signoff->setSymbolic((string) $signoffXML->symbolic);
$signoff->setFileRevision((int) $signoffXML->fileRevision);
$signoff->setDateUnderway((string) $signoffXML->dateUnderway);
$signoff->setDateNotified((string) $signoffXML->dateNotified);
$signoff->setDateCompleted((string) $signoffXML->dateCompleted);
$signoff->setDateAcknowledged((string) $signoffXML->dateAcknowledged);
$signoffDAO->insertObject($signoff);
}
$editorSubmissionDAO =& DAORegistry::getDAO('EditorSubmissionDAO');
foreach ($articleXML->editDecisions as $editDecisionXML) {
$editDecisions =& $editorSubmissionDAO->update('INSERT INTO edit_decisions (article_id, round, editor_id, decision, date_decided) values (?, ?, ?, ?, ?)', array($article->getId(), (string) $editDecisionXML->round, $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editDecisionXML->editorId), (string) $editDecisionXML->decision, (string) $editDecisionXML->dateDecided));
}
$publishedArticleDAO =& DAORegistry::getDAO('PublishedArticleDAO');
if (isset($articleXML->publishedArticle)) {
$publishedArticleXML = $articleXML->publishedArticle;
$publishedArticle = new PublishedArticle();
$publishedArticle->setId($article->getId());
$publishedArticle->setIssueId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ISSUE, (int) $publishedArticleXML->issueId));
$publishedArticle->setDatePublished((string) $publishedArticleXML->datePublished);
$publishedArticle->setSeq((int) $publishedArticleXML->seq);
$publishedArticle->setAccessStatus((int) $publishedArticleXML->accessStatus);
$publishedArticleDAO->insertPublishedArticle($publishedArticle);
}
$articleEventLogDAO =& DAORegistry::getDAO('ArticleEventLogDAO');
$eventLogsXML =& iterator_to_array($articleXML->eventLogs->eventLog);
$eventLogsXML = array();
foreach ($articleXML->eventLogs->eventLog as $eventLogXML) {
array_unshift($eventLogsXML, $eventLogXML);
}
foreach ($eventLogsXML as $eventLogXML) {
$eventLog = new ArticleEventLogEntry();
$eventLog->setAssocType(ASSOC_TYPE_ARTICLE);
$eventLog->setAssocId($article->getId());
$eventLog->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $eventLogXML->userId));
$eventLog->setDateLogged((string) $eventLogXML->dateLogged);
$eventLog->setIPAddress((string) $eventLogXML->IPAddress);
$eventLog->setEventType((int) $eventLogXML->eventType);
$eventLog->setMessage((string) $eventLogXML->message);
$eventLog->setIsTranslated((int) $eventLogXML->isTranslated);
$articleEventLogDAO->insertObject($eventLog);
$this->restoreDataObjectSettings($articleEventLogDAO, $eventLogXML->settings, 'event_log_settings', 'log_id', $eventLog->getId());
}
try {
$article->setSubmissionFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->submissionFileId));
} catch (Exception $e) {
}
try {
$article->setRevisedFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->revisedFileId));
} catch (Exception $e) {
}
try {
$article->setReviewFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->reviewFileId));
} catch (Exception $e) {
}
try {
$article->setEditorFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->editorFileId));
} catch (Exception $e) {
}
$articleDAO->updateArticle($article);
$this->nextElement();
}
}
/**
* Upload a review on behalf of its reviewer.
* @param $reviewId int
*/
function uploadReviewForReviewer($reviewId)
{
$reviewAssignmentDao =& DAORegistry::getDAO('ReviewAssignmentDAO');
$userDao =& DAORegistry::getDAO('UserDAO');
$user =& Request::getUser();
$reviewAssignment =& $reviewAssignmentDao->getById($reviewId);
$reviewer =& $userDao->getUser($reviewAssignment->getReviewerId(), true);
if (HookRegistry::call('SectionEditorAction::uploadReviewForReviewer', array(&$reviewAssignment, &$reviewer))) {
return;
}
// Upload the review file.
import('classes.file.ArticleFileManager');
$articleFileManager = new ArticleFileManager($reviewAssignment->getSubmissionId());
// Only upload the file if the reviewer has yet to submit a recommendation
if (($reviewAssignment->getRecommendation() === null || $reviewAssignment->getRecommendation() === '') && !$reviewAssignment->getCancelled()) {
$fileName = 'upload';
if ($articleFileManager->uploadedFileExists($fileName)) {
if ($reviewAssignment->getReviewerFileId() != null) {
$fileId = $articleFileManager->uploadReviewFile($fileName, $reviewAssignment->getReviewerFileId());
} else {
$fileId = $articleFileManager->uploadReviewFile($fileName);
}
}
}
if (isset($fileId) && $fileId != 0) {
// Only confirm the review for the reviewer if
// he has not previously done so.
if ($reviewAssignment->getDateConfirmed() == null) {
$reviewAssignment->setDeclined(0);
$reviewAssignment->setDateConfirmed(Core::getCurrentDate());
}
$reviewAssignment->setReviewerFileId($fileId);
$reviewAssignment->stampModified();
$reviewAssignmentDao->updateReviewAssignment($reviewAssignment);
// Add log
import('classes.article.log.ArticleLog');
import('classes.article.log.ArticleEventLogEntry');
$entry = new ArticleEventLogEntry();
$entry->setArticleId($reviewAssignment->getSubmissionId());
$entry->setUserId($user->getId());
$entry->setDateLogged(Core::getCurrentDate());
$entry->setEventType(ARTICLE_LOG_REVIEW_FILE_BY_PROXY);
$entry->setLogMessage('log.review.reviewFileByProxy', array('reviewerName' => $reviewer->getFullName(), 'articleId' => $reviewAssignment->getSubmissionId(), 'round' => $reviewAssignment->getRound(), 'userName' => $user->getFullName()));
$entry->setAssocType(ARTICLE_LOG_TYPE_REVIEW);
$entry->setAssocId($reviewAssignment->getId());
ArticleLog::logEventEntry($reviewAssignment->getSubmissionId(), $entry);
}
}
/**
* Upload the annotated version of an article.
* @param $reviewId int
*/
function uploadReviewerVersion($reviewId)
{
import("file.ArticleFileManager");
$reviewAssignmentDao =& DAORegistry::getDAO('ReviewAssignmentDAO');
$reviewAssignment =& $reviewAssignmentDao->getReviewAssignmentById($reviewId);
$articleFileManager = new ArticleFileManager($reviewAssignment->getArticleId());
// Only upload the file if the reviewer has yet to submit a recommendation
// and if review forms are not used
if (($reviewAssignment->getRecommendation() === null || $reviewAssignment->getRecommendation() === '') && !$reviewAssignment->getCancelled()) {
$fileName = 'upload';
if ($articleFileManager->uploadedFileExists($fileName)) {
HookRegistry::call('ReviewerAction::uploadReviewFile', array(&$reviewAssignment));
if ($reviewAssignment->getReviewerFileId() != null) {
$fileId = $articleFileManager->uploadReviewFile($fileName, $reviewAssignment->getReviewerFileId());
} else {
$fileId = $articleFileManager->uploadReviewFile($fileName);
}
}
}
if (isset($fileId) && $fileId != 0) {
$reviewAssignment->setReviewerFileId($fileId);
$reviewAssignment->stampModified();
$reviewAssignmentDao->updateReviewAssignment($reviewAssignment);
// Add log
import('article.log.ArticleLog');
import('article.log.ArticleEventLogEntry');
$userDao =& DAORegistry::getDAO('UserDAO');
$reviewer =& $userDao->getUser($reviewAssignment->getReviewerId());
$entry = new ArticleEventLogEntry();
$entry->setArticleId($reviewAssignment->getArticleId());
$entry->setUserId($reviewer->getId());
$entry->setDateLogged(Core::getCurrentDate());
$entry->setEventType(ARTICLE_LOG_REVIEW_FILE);
$entry->setLogMessage('log.review.reviewerFile');
$entry->setAssocType(ARTICLE_LOG_TYPE_REVIEW);
$entry->setAssocId($reviewAssignment->getId());
ArticleLog::logEventEntry($reviewAssignment->getArticleId(), $entry);
}
}
