function addROIsForImage($image_pid)
{
$image_rois = AP_Specimen::getImageListForSpecimen($specimen_pid);
$rois = array();
for ($i; $i < sizeOf($image_rois); $i++) {
$roi_pid = $image_rois[$i];
if (array_search($roi_pid, $this->permission_list) > -1) {
//don't add anything, it's already there!
} else {
//array_push((array) $this->roi_pids, $roi_pid);
$roi['pid'] = $roi_pid;
$roiMetadata = AP_ROI::getROIMetadata_record($roi_pid);
$roi['roiMetadata'] = $roiMetadata;
array_push($rois, $roi);
}
}
return $rois;
}
function add_roi_to_queue($image_pid, $roi_pid, $workflow_id)
{
$queue_item_html = '';
$status_dom = AP_ROI::getROILock($roi_pid);
if ($status_dom != false) {
$transcribedStatus = $status_dom->getElementsByTagName('transcribedStatus')->item(0)->nodeValue;
$parsedL1Status = $status_dom->getElementsByTagName('parsedL1Status')->item(0)->nodeValue;
$locked = $status_dom->getElementsByTagName('locked')->item(0)->nodeValue;
$locked_time = $status_dom->getElementsByTagName('locked_time')->item(0)->nodeValue;
$locked_session = $status_dom->getElementsByTagName('locked_session')->item(0)->nodeValue;
$workflow_status = workflow_status($locked, $locked_time, $locked_session);
$queue_item_html .= create_queue_list_roi($roi_pid, $image_pid, $transcribedStatus, $parsedL1Status, $locked_by, $workflow_status, $workflow_id);
} else {
$queue_item_html = "locked";
}
return $queue_item_html;
}
function get_transcribe_content($roi_pid, $size, $workflow_id)
{
global $user;
list($height, $width) = explode(":", $size);
$returnJSON = "";
if (Workflow_Users::doesWorkflowHaveUserName($workflow_id, $user->name) && Workflow_Permission::doesWorkflowHavePermission($workflow_id, "canTranscribe")) {
$roiMetadata_record = AP_ROI::getroiMetadata_record($roi_pid);
$roiURL = $roiMetadata_record['roiURL'];
if ($height > $roiMetadata_record['h'] / $roiMetadata_record['w'] * $width) {
$roi_image_url = scaleDjatokaURL($roiURL, $width, '0');
//$roi_image_url = getDjatokaURL($roiMetadata_record['sourceURL'], 'getRegion', '100', $roiMetadata_record['y'], $roiMetadata_record['x'], $roiMetadata_record['h'], $roiMetadata_record['w'], $width, '0');
$returnJSON['image_html'] = "<img class='transcribe_roi_image' src='{$roi_image_url}' />";
} else {
$roi_image_url = scaleDjatokaURL($roiURL, '0', $height);
//$roi_image_url = getDjatokaURL($roiMetadata_record['sourceURL'], 'getRegion', '100', $roiMetadata_record['y'], $roiMetadata_record['x'], $roiMetadata_record['h'], $roiMetadata_record['w'], '0', $height);
$returnJSON['image_html'] = "<img class='transcribe_roi_image' src='{$roi_image_url}' />";
}
$roi_obj = new roiHandler($roi_pid);
$returnJSON['gocr'] = "";
$returnJSON['ocrad'] = "";
$returnJSON['ocropus'] = "";
$returnJSON['text'] = "";
if ($roi_obj->ifExist("GOCR")) {
$returnJSON['gocr'] = $roi_obj->getDatastream("GOCR");
}
if ($roi_obj->ifExist("ocrad")) {
$returnJSON['ocrad'] = $roi_obj->getDatastream("ocrad");
}
if ($roi_obj->ifExist("OCRopus")) {
$returnJSON['ocropus'] = $roi_obj->getDatastream("OCRopus");
}
if ($roi_obj->ifExist("Text")) {
$returnJSON['text'] = $roi_obj->getDatastream("Text");
}
} else {
echo "Sorry! You do not have permission for this operation";
}
echo json_encode($returnJSON);
}
public function index_all()
{
$image_list = AP_Image::getImageList();
foreach ($image_list as $image) {
$this->index($image);
}
$roi_list = AP_ROI::getROIList();
foreach ($roi_list as $roi) {
$this->index($roi);
}
}
function get_parsing_content($roi_pid, $size, $parse_level, $workflow_id)
{
global $user;
list($height, $width) = explode(":", $size);
if (Workflow_Users::doesWorkflowHaveUserName($workflow_id, $user->name) && Workflow_Permission::doesWorkflowHavePermission($workflow_id, $parse_level)) {
$roiMetadata_record = AP_ROI::getroiMetadata_record($roi_pid);
$roiURL = $roiMetadata_record['roiURL'];
if ($height > $roiMetadata_record['h'] / $roiMetadata_record['w'] * $width) {
$roi_image_url = scaleDjatokaURL($roiURL, $width, '0');
$image_html = "<img class='transcribe_roi_image' src='{$roi_image_url}' />";
} else {
$roi_image_url = scaleDjatokaURL($roiURL, '0', $height);
$image_html = "<img class='transcribe_roi_image' src='{$roi_image_url}' />";
}
$roi_obj = new roiHandler($roi_pid);
$returnJSON['text'] = "";
if ($roi_obj->ifExist("Text")) {
$text = nl2br($roi_obj->getDatastream("Text"));
}
} else {
return false;
}
return array($image_html, $text);
}
function specimenMetadata_details_content($roi_pid = null)
{
global $base_url;
$fedora_base_url = variable_get("fedora_base_url", "http://localhost:8080/fedora");
$html = '';
$html .= '<div id="specimenMetadata_details_content">' . "\n";
if ($roi_pid != null && $roi_pid != "0") {
$roi = new AP_ROI();
$image_pid = $roi->get_image_pid($roi_pid);
$sp_pid = AP_Image::get_specimen_pid($image_pid);
$roiMetadata_record = $roi->getroiMetadata_record($roi_pid);
$roiURL = $roiMetadata_record['roiURL'];
$djatoka_url = scaleDjatokaURL($roiURL, '300', '0');
$html .= "<h3>Details: {$roi_pid}</h3>";
$html .= "<table><tr><td valign='top' width='300'>";
$html .= "<img src='{$djatoka_url}'/></td>";
$html .= "<td>Specimen: {$sp_pid}<br/>Image: {$image_pid}<br/>ROI: {$roi_pid}<br/>Datastream: specimenMetadata<br/><br/>";
$text = shell_exec("curl -H - XGET {$fedora_base_url}/get/{$roi_pid}/specimenMetadata");
$check = strpos($text, "404 Not Found");
if ($check === FALSE) {
$specimenMetadata_xml_url = $server_base . '/drupal/modules/apiary_project/workflow/include/specimenMetadata_xml.php?pid=' . $roi_pid;
$html .= '<textarea style="width:500px; height:200px">' . $text . '</textarea></td>';
$html .= "</tr></table>";
} else {
$html .= "No specimenMetadata found";
}
} else {
}
$html .= '</div><!-- specimenMetadata_details_content -->' . "\n";
echo $html;
}
function get_right_click_list($pid)
{
$ap_roi = new AP_ROI();
$roiMetadata_record = $ap_roi->getroiMetadata_record($pid);
$roi_type_temp = $roiMetadata_record['roiType'];
$roi_list = getROItypeList();
$roi_type = '';
switch ($roi_type_temp) {
case $roi_list[0]:
$roi_type = "primary";
break;
case $roi_list[1]:
$roi_type = "determination";
break;
case $roi_list[2]:
$roi_type = "barcode";
break;
case $roi_list[3]:
$roi_type = "type";
break;
case $roi_list[4]:
$roi_type = "annotation";
break;
}
//Context Menu List
print '<ul id="apiary_context_menu" class="jeegoocontext cm_blue">';
//Who & When
print '<li>Who & When<ul>';
$whoObj = db_query("select * from {apiary_project} where parse_level=1 AND (ui_categories='who' OR ui_categories='when')");
while ($res = db_fetch_object($whoObj)) {
if (stristr($res->roi_association, $roi_type) !== false) {
print '<li><a id="menu_' . $res->term . '" href=javascript:getSelText("' . $res->term . '")>' . $res->display_label . '</a>';
}
}
print "</ul></li>";
//What
print '<li>What<ul>';
$whatObj = db_query("select * from {apiary_project} where parse_level=1 AND ui_categories='what'");
while ($res = db_fetch_object($whatObj)) {
if (stristr($res->roi_association, $roi_type) !== false) {
print '<li><a id="menu_' . $res->term . '" href=javascript:getSelText("' . $res->term . '")>' . $res->display_label . '</a>';
}
}
print "</ul></li>";
//Where
print '<li>Where</a><ul>';
$whereObj = db_query("select * from {apiary_project} where parse_level=1 AND ui_categories='where'");
while ($res = db_fetch_object($whereObj)) {
if (stristr($res->roi_association, $roi_type) !== false) {
print '<li><a id="menu_' . $res->term . '" href=javascript:getSelText("' . $res->term . '")>' . $res->display_label . '</a>';
}
}
print "</ul></li>";
print '</ul>';
}
function ROISearchResults($roi_pids)
{
$found_result = false;
foreach ($roi_pids as $roi_pid) {
if (!$found_result) {
$results_html .= "<div align='left'>";
$results_html .= "<table id='roi_results_table' class='tablesorter' style='width:800px'><thead><tr><th>ROI</th><th>Image</th><th>Specimen</th><th>Datastream</th></tr><thead>";
$found_result = true;
}
$results_html .= "<tbody><tr>";
//$results_html .= '<td><a class="preview" href="'.$server_base.'/drupal/apiary?ref=specimenMetadata_details&pid='.$roi_pid.'">'.$roi_pid.'</a></td>';
$results_html .= '<td><a href="#" class="preview" onclick="display_specimenMetadata_details(\'' . $roi_pid . '\');">' . $roi_pid . '</a></td>';
$roi_ob = new AP_ROI();
$image_pid = $roi_ob->get_image_pid($roi_pid);
$results_html .= "<td>{$image_pid}</td>";
$sp_pid = AP_Image::get_specimen_pid($image_pid);
$results_html .= "<td>{$sp_pid}</td>";
$fedora_base_url = variable_get('fedora_base_url', 'http://localhost:8080/fedora');
$text = shell_exec("curl -H - XGET {$fedora_base_url}/get/{$roi_pid}/specimenMetadata");
$check = strpos($text, "404 Not Found");
if ($check === FALSE) {
$results_html .= "<td><a href='" . $fedora_base_url . "/get/{$roi_pid}/specimenMetadata'>specimenMetadata</a></td></tr>";
} else {
$results_html .= "<td>No specimenMetadata found</td></tr>";
}
}
if ($found_result) {
$server_base = variable_get('apiary_research_base_url', 'http://localhost');
$results_html .= "</tbody></table></div>";
$results_html .= '<div id="pager" class="pager">';
$results_html .= '<form>';
$results_html .= '<img src="' . variable_get('apiary_research_base_url', 'http://localhost') . '/drupal/modules/apiary_project/workflow/assets/img/first.png" class="first"/>';
$results_html .= '<img src="' . variable_get('apiary_research_base_url', 'http://localhost') . '/drupal/modules/apiary_project/workflow/assets/img/prev.png" class="prev"/>';
$results_html .= '<input type="text" class="pagedisplay"/>';
$results_html .= '<img src="' . variable_get('apiary_research_base_url', 'http://localhost') . '/drupal/modules/apiary_project/workflow/assets/img/next.png" class="next"/>';
$results_html .= '<img src="' . variable_get('apiary_research_base_url', 'http://localhost') . '/drupal/modules/apiary_project/workflow/assets/img/last.png" class="last"/>';
$results_html .= '<select class="pagesize">';
$results_html .= '<option selected="selected" value="10">10</option>';
$results_html .= '<option value="20">20</option>';
$results_html .= '<option value="30">30</option>';
$results_html .= '<option value="40">40</option>';
$results_html .= '</select>';
$results_html .= '</form>';
$results_html .= '</div><!--pager-->';
} else {
$results_html .= "<br/><br/><b>No Results found!</b>";
}
return $results_html;
}
static function releaseROILock($roi_pid)
{
global $user;
$now = date("YmdHis");
$datastream_name = "status";
$datastream_label = "ROI Status";
$session_id = $_SESSION['apiary_session_id'];
if ($session_id == '') {
$session_id = $_SESSION['apiary_cleared_session_id'];
}
$dom = FedoraObject::getManagedXMLDom($roi_pid, $datastream_name);
if ($dom != false) {
if ($dom->getElementsByTagName('locked')->item(0)->nodeValue != "false") {
if (!empty($dom->getElementsByTagName('locked_session')->item(0)->nodeValue)) {
$locked_session = $dom->getElementsByTagName('locked_session')->item(0)->nodeValue;
if ($dom->getElementsByTagName('locked_by')->item(0)->nodeValue == $user->name && $locked_session == $session_id) {
$dom->getElementsByTagName('locked')->item(0)->nodeValue = "false";
} else {
if (false) {
//could add an override if the user has some admin right
} else {
$last_locked_time = $dom->getElementsByTagName('locked_time')->item(0)->nodeValue;
$apiary_timeout = variable_get('apiary_object_timeout', '1800');
$last_locked_timeout = $last_locked_time + $apiary_timeout;
if ($now > $last_locked_timeout || !Workflow_Sessions::active_session($locked_session)) {
$dom->getElementsByTagName('locked')->item(0)->nodeValue = "false";
} else {
//can't unlock this record
return false;
}
}
}
}
}
$dom->getElementsByTagName('locked')->item(0)->nodeValue = "false";
} else {
//create status datastream!
$dom = AP_ROI::generateROIStatusDom("false", $user->name, $now, $session_id);
}
//We don't get here if we fail
if (FedoraObject::createManagedXMLDom($roi_pid, $datastream_name, $datastream_label, $dom)) {
include_once drupal_get_path('module', 'apiary_project') . '/workflow/include/search.php';
$search_instance = new search();
$search_instance->index($roi_pid);
return FedoraObject::getManagedXMLDom($roi_pid, $datastream_name);
}
}
