function getMaps($code)
{
global $map_notebook_msg;
$map_notebook_msg = "";
$prog = getProgressTasks();
if ($_SESSION['bgjob']['eds_2fofc']) {
$prog['2fofc'] = "Download 2Fo-Fc map from the EDS";
}
if ($_SESSION['bgjob']['eds_fofc']) {
$prog['fofc'] = "Download Fo-Fc (difference) map from the EDS";
}
$mapDir = "{$_SESSION['dataDir']}/" . MP_DIR_EDMAPS;
if (!file_exists($mapDir)) {
mkdir($mapDir, 0777);
}
if ($_SESSION['bgjob']['eds_2fofc']) {
setProgress($prog, '2fofc');
$mapName = "{$code}.omap.gz";
$mapPath = "{$mapDir}/{$mapName}";
if (!file_exists($mapPame)) {
$tmpMap = getEdsMap($code, 'omap', '2fofc');
if ($tmpMap && copy($tmpMap, $mapPath)) {
unlink($tmpMap);
$_SESSION['edmaps'][$mapName] = $mapName;
mpLog("edmap-eds:User requested 2Fo-Fc map for {$code} from the EDS");
$map_notebook_msg .= "<p>The 2Fo-Fc map for {$code} was successfully retrieved from the EDS.</p>\n";
} else {
$map_notebook_msg .= "<p><div class='alert'>The 2Fo-Fc map for {$code} could not be retrieved from the EDS.</div></p>\n";
}
} else {
echo "Map file already exists";
}
}
if ($_SESSION['bgjob']['eds_fofc']) {
setProgress($prog, 'fofc');
$mapName = "{$code}-diff.omap.gz";
$mapPath = "{$mapDir}/{$mapName}";
if (!file_exists($mapPame)) {
$tmpMap = getEdsMap($code, 'omap', 'fofc');
if ($tmpMap && copy($tmpMap, $mapPath)) {
unlink($tmpMap);
$_SESSION['edmaps'][$mapName] = $mapName;
mpLog("edmap-eds:User requested Fo-Fc map for {$code} from the EDS");
$map_notebook_msg .= "<p>The Fo-Fc map for {$code} was successfully retrieved from the EDS.</p>\n";
} else {
$map_notebook_msg .= "<p><div class='alert'>The Fo-Fc map for {$code} could not be retrieved from the EDS.</div></p>\n";
}
}
}
setProgress($prog, null);
}
function removeHydrogens($inpath, $outpath)
{
$tasks = getProgressTasks();
$tasks['reducetrim'] = "Remove hydrogens to avoid possible conflict with hydrogen lengths";
$tmp1 = mpTempfile("tmp_pdb_");
setProgress($tasks, 'reducetrim');
reduceTrim($inpath, $tmp1);
copy($tmp1, $outpath);
// Clean up temp files
unlink($tmp1);
setProgress($tasks, null);
// all done
}