<body>
<div id="wrapper">
<?
//require "config.php";
require "functions.php";
require "includes.php";
require "menu.php";
/* ----- setup variables ----- */
$action = GetVariable("action");
$id = GetVariable("id");
$protocols = GetVariable("protocols");
$thegroup = GetVariable("thegroup");
$modality = GetVariable("modality");
$pgitemid = GetVariable("pgitemid");
//PrintVariable($_POST,'POST');
/* determine action */
switch ($action) {
case 'disable':
DisableModality($id);
DisplayModalityList();
break;
case 'enable':
EnableModality($id);
DisplayModalityList();
break;
case 'editprotocolgroups':
EditProtocolGroups($id,'');
// ------------------------------------------------------------------------------
// NiDB subjectlist.php
// Copyright (C) 2004 - 2016
// Gregory A Book <*****@*****.**> <*****@*****.**>
// Olin Neuropsychiatry Research Center, Hartford Hospital
// ------------------------------------------------------------------------------
// GPLv3 License:
// This program is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
// You should have received a copy of the GNU General Public License
// along with this program. If not, see <http://www.gnu.org/licenses/>.
// ------------------------------------------------------------------------------
include "globalfunctions.php";
$term = GetVariable("term");
$returnarray = array();
$sqlstring = "select uid from subjects where uid like '%{$term}%'";
$result = mysql_query($sqlstring) or die("Query failed: " . mysql_error() . "<br><i>{$sqlstring}</i><br>");
while ($row = mysql_fetch_array($result, MYSQL_ASSOC)) {
$uid = $row['uid'];
$arr['id'] = $uid;
$arr['label'] = $uid;
$arr['value'] = $uid;
array_push($returnarray, $arr);
}
echo json_encode($returnarray);
<link rel="icon" type="image/png" href="images/squirrel.png">
<title>NiDB - Import Log</title>
</head>
<body>
<div id="wrapper">
<?php
require "functions.php";
require "includes.php";
require "nidbapi.php";
require "menu.php";
/* ----- setup variables ----- */
$action = GetVariable("action");
//$orderby = GetVariable("orderby");
//$groupby = GetVariable("groupby");
$transactionid = GetVariable("transactionid");
/* determine action */
switch ($action) {
case 'viewimported':
DisplayMenu();
DisplayAllImportLog();
break;
case 'viewreceived':
DisplayMenu();
DisplayAllImportReceived();
break;
case 'viewtransactions':
DisplayMenu();
DisplayTransactions();
break;
case 'viewsingletransaction':
$groupid = GetVariable("groupid");
$subjectgroupid = GetVariable("subjectgroupid");
$studygroupid = GetVariable("studygroupid");
$seriesgroupid = GetVariable("seriesgroupid");
$groupname = GetVariable("groupname");
$grouptype = GetVariable("grouptype");
$owner = GetVariable("owner");
$uids = GetVariable("uids");
$uidids = GetVariable("uidids");
$seriesids = GetVariable("seriesid");
$studyids = GetVariable("studyid");
$modality = GetVariable("modality");
$itemid = GetVariable("itemid");
$measures = GetVariable("measures");
$columns = GetVariable("columns");
$groupmeasures = GetVariable("groupmeasures");
/* determine action */
switch ($action) {
case 'add':
AddGroup($groupname, $grouptype, $GLOBALS['username']);
DisplayGroupList();
break;
case 'delete': DeleteGroup($id); break;
case 'addsubjectstogroup':
AddSubjectsToGroup($subjectgroupid, $uids, $seriesids, $modality);
ViewGroup($subjectgroupid, $measures, $columns, $groupmeasures);
break;
case 'addstudiestogroup':
AddStudiesToGroup($studygroupid, $seriesids, $studyids, $modality);
ViewGroup($studygroupid, $measures, $columns, $groupmeasures);
<body>
<div id="wrapper">
<?
//require "config.php";
require "functions.php";
require "includes.php";
require "menu.php";
/* setup variables */
$action = GetVariable("action");
$year = GetVariable("year");
$datestart = GetVariable("datestart");
$dateend = GetVariable("dateend");
$modality = GetVariable("modality");
$studysite = GetVariable("studysite");
switch ($action) {
case 'yearstudy':
DisplayMenu();
DisplayYear($year, "studies", $modality, $studysite);
break;
case 'viewreport':
ViewReport($datestart, $dateend, $modality, $studysite);
break;
case 'menu':
default:
DisplayMenu();
break;
}
<head>
<link rel="icon" type="image/png" href="images/squirrel.png">
<title><?php
echo $_SERVER['HTTP_HOST'];
?>
- NiDB</title>
</head>
<body>
<div id="wrapper">
<?php
require "functions.php";
require "includes.php";
/* ----- setup variables ----- */
$vars['action'] = GetVariable("action");
$vars['instanceid'] = GetVariable("instanceid");
switch ($vars['action']) {
case 'switchinstance':
SwitchInstance($vars['instanceid']);
break;
}
/* put this here so that the instance ID can be changed before displaying things */
require "menu.php";
/* -------------------------------------------- */
/* ------- SwitchInstance --------------------- */
/* -------------------------------------------- */
function SwitchInstance($id)
{
$sqlstring = "select instance_name from instance where instance_id = {$id}";
$result = MySQLQuery($sqlstring, __FILE__, __LINE__);
$row = mysql_fetch_array($result, MYSQL_ASSOC);
require "functions.php";
?>
<html>
<head>
<link rel="icon" type="image/png" href="images/squirrel.png">
<title>Verify email address</title>
<META http-equiv="refresh" content="10;URL=login.php">
</head>
<body>
<link rel="stylesheet" type="text/css" href="style.css">
<br><br>
<?php
/* ----- setup variables ----- */
$k = GetVariable("k");
/* database connection */
$link = mysql_connect($GLOBALS['db_hostname'], $GLOBALS['cfg']['mysqluser'], $GLOBALS['cfg']['mysqlpassword']) or die("Could not connect: " . mysql_error());
mysql_select_db($GLOBALS['cfg']['mysqldatabase']) or die("Could not select database<br>");
/* validate the key and redirect as necessary */
if (Validate($k)) {
DisplaySuccess();
} else {
DisplayFail();
}
/* -------------------------------------------- */
/* ------- DisplaySuccess --------------------- */
/* -------------------------------------------- */
function DisplaySuccess()
{
?>
} else {
return array('error'=> 'Could not save uploaded file.' .
'The upload was cancelled, or server error encountered');
}
//return array('error'=>'should not be here 8');
}
}
//echo "check 100\n";
/* params are stored in $_GET */
$modality = strtolower(GetVariable("modality"));
$studyid = GetVariable("studyid");
$seriesid = GetVariable("seriesid");
//echo $modality;
if ($modality == "mr") {
$uploadpath = $GLOBALS['dicomincomingpath'] . '/';
}
elseif ($modality == "mrbeh") {
$sqlstring = "select a.series_num, b.study_num, d.uid from mr_series a left join studies b on a.study_id = b.study_id left join enrollment c on b.enrollment_id = c.enrollment_id left join subjects d on c.subject_id = d.subject_id left join projects e on c.project_id = e.project_id where a.mrseries_id = $seriesid";
$result2 = mysql_query($sqlstring) or die("Query failed: " . mysql_error() . "<br><i>$sqlstring</i><br>");
$row = mysql_fetch_array($result2, MYSQL_ASSOC);
$study_num = $row['study_num'];
$uid = $row['uid'];
$series_num = $row['series_num'];
$uploadpath = $GLOBALS['cfg']['archivedir'] . "/$uid/$study_num/$series_num/beh/";
if (!file_exists($uploadpath)) {
<body>
<div id="wrapper">
<?php
require "functions.php";
require "includes.php";
require "nidbapi.php";
//PrintVariable($_POST,'POST');
/* ----- setup variables ----- */
$action = GetVariable("action");
$projectid = GetVariable("projectid");
$protocolgroupid = GetVariable("protocolgroupid");
$projectprotocolid = GetVariable("projectprotocolid");
$criteria = GetVariable("criteria");
$numpersession = GetVariable("numpersession");
$numtotal = GetVariable("numtotal");
/* determine action */
switch ($action) {
case 'addprotocol':
AddProjectProtocol($projectid, $protocolgroupid, $criteria, $numpersession, $numtotal);
DisplayProjectProtocolList($projectid);
break;
case 'deleteprotocol':
DeleteProjectProtocol($projectprotocolid);
DisplayProjectProtocolList($projectid);
break;
default:
DisplayProjectProtocolList($projectid);
}
/* ------------------------------------ functions ------------------------------------ */
/* -------------------------------------------- */
$typeList[] = GetVariable('ttype_' . $i);
}
if (GetVariable('type_' . $i) == "BELONGSTO" || GetVariable('type_' . $i) == "HASMANY") {
$classList[] = GetVariable('tclass_' . $i);
} else {
$classList[] = '';
}
} else {
//attribute may have been removed. proceed to next row
$z++;
}
}
$_SESSION['objectName'] = $objectName;
$_SESSION['language'] = $language = GetVariable('language');
$_SESSION['wrapper'] = $wrapper = GetVariable('wrapper');
$_SESSION['pdoDriver'] = $pdoDriver = GetVariable('pdoDriver');
if ($GLOBALS['configuration']['soapEngine'] == "nusoap") {
$client = new soapclient($GLOBALS['configuration']['soap'], true);
$params = array('objectName' => $objectName, 'attributeList' => $attributeList, 'typeList' => $typeList, 'language' => $language, 'wrapper' => $wrapper, 'pdoDriver' => $pdoDriver);
$object = base64_decode($client->call('GenerateObject', $params));
//echo $client->debug_str;
$_SESSION['objectString'] = $object;
$_SESSION['attributeList'] = serialize($attributeList);
$_SESSION['typeList'] = serialize($typeList);
$_SESSION['classList'] = serialize($classList);
} else {
if ($GLOBALS['configuration']['soapEngine'] == "phpsoap") {
$client = new SoapClient('services/pog.wsdl', array('cache_wsdl' => 0));
try {
$object = base64_decode($client->GenerateObject($objectName, $attributeList, $typeList, $language, $wrapper, $pdoDriver, $classList));
$_SESSION['objectString'] = $object;
</head>
<body>
<div id="wrapper">
<?php
require "functions.php";
require "includes.php";
require "nidbapi.php";
require "menu.php";
/* ----- setup variables ----- */
$action = GetVariable("action");
$id = GetVariable("id");
$defaultinstanceid = GetVariable("defaultinstanceid");
$instancename = GetVariable("instancename");
$users = GetVariable("users");
$userinstanceid = GetVariable("userinstanceid");
//print_r($_POST);
/* determine action */
switch ($action) {
case 'editform':
DisplayPrefsForm("edit", $id);
break;
case 'addform':
DisplayPrefsForm("add", "");
break;
case 'update':
UpdatePrefs($id, $instancename, $users);
DisplayPrefsList();
break;
case 'add':
AddPrefs($prefsname);
$c['city'] = GetVariable("city");
$c['state'] = GetVariable("state");
$c['zip'] = GetVariable("zip");
$c['country'] = GetVariable("country");
$c['institution'] = GetVariable("institution");
$c['dept'] = GetVariable("dept");
$c['website'] = GetVariable("website");
$sendmail_dailysummary = GetVariable("sendmail_dailysummary");
$enablebeta = GetVariable("enablebeta");
$id = GetVariable("id");
$instanceid = GetVariable("instanceid");
$protocol = GetVariable("protocol");
$variable = GetVariable("variable");
$criteria = GetVariable("criteria");
$value = GetVariable("value");
/* ----- determine which action to take ----- */
switch ($action) {
case 'saveoptions':
SaveOptions($username, $password, $c, $sendmail_dailysummary, $enablebeta);
DisplayOptions($username);
break;
case 'addnot':
AddNotification($username, $protocol, $variable, $criteria, $value);
DisplayOptions($username);
break;
case 'deletenot':
DeleteNotification($id);
DisplayOptions($username);
break;
require "menu.php";
/* setup variables */
$action = GetVariable("action");
$enrollmentid = GetVariable("enrollmentid");
$experimentid = GetVariable("experimentid");
$formid = GetVariable("formid");
$val_strings = GetVariables("string");
$val_numbers = GetVariables("number");
$val_texts = GetVariables("text");
$val_dates = GetVariables("date");
$val_files = GetVariables("file");
$experimentor = GetVariable("experimentor");
$experimentdate = GetVariable("experimentdate");
$label = GetVariable("label");
$notes = GetVariable("notes");
//print_r($val_text);
/* determine action */
switch ($action) {
case 'create':
CreateForm($enrollmentid, $formid, $username);
break;
case 'completed':
SetAsComplete($experimentid);
ViewForm($experimentid, "view");
break;
case 'save':
$experimentid = SaveForm($enrollmentid, $formid, $val_strings, $val_numbers, $val_texts, $val_dates, $val_files, $experimentor, $experimentdate, $username, $label, $notes);
ViewForm($experimentid, "view");
<link rel="icon" type="image/png" href="images/squirrel.png">
<title>NiDB - Mass email</title>
</head>
<body>
<div id="wrapper">
<?php
require "functions.php";
require "includes.php";
require "nidbapi.php";
require "menu.php";
/* ----- setup variables ----- */
$action = GetVariable("action");
$emailbody = GetVariable("emailbody");
$emailsubject = GetVariable("emailsubject");
$emailto = GetVariable("emailto");
/* determine action */
switch ($action) {
case 'sendemail':
SendEmail($emailbody, $emailsubject, $emailto);
break;
default:
DisplayEmailForm();
}
/* ------------------------------------ functions ------------------------------------ */
/* -------------------------------------------- */
/* ------- DisplayEmailForm ------------------- */
/* -------------------------------------------- */
function DisplayEmailForm()
{
$urllist['Administration'] = "cleanup.php";
$requestvars['publicdownloadregisterrequired'] = GetVariable("publicdownloadregisterrequired");
$requestvars['publicdownloadexpire'] = GetVariable("publicdownloadexpire");
$requestvars['dicomtags'] = GetVariable("dicomtags");
$requestvars['timepoints'] = GetVariable("timepoints");
$requestvars['behformat'] = GetVariable("behformat");
$requestvars['behdirnameroot'] = GetVariable("behdirnameroot");
$requestvars['behdirnameseries'] = GetVariable("behdirnameseries");
$requestvars['subjectmeta'] = GetVariable("subjectmeta");
$requestvars['subjectdata'] = GetVariable("subjectdata");
$requestvars['subjectphenotype'] = GetVariable("subjectphenotype");
$requestvars['subjectforms'] = GetVariable("subjectforms");
$requestvars['studymeta'] = GetVariable("studymeta");
$requestvars['studydata'] = GetVariable("studydata");
$requestvars['seriesmeta'] = GetVariable("seriesmeta");
$requestvars['seriesdata'] = GetVariable("seriesdata");
$requestvars['allsubject'] = GetVariable("allsubject");
$numpostvars = count($_POST);
$maxnumvars = ini_get('max_input_vars');
//echo "<pre>";
//print_r($_POST);
//echo "Received " . count($_POST) . " variables<br>";
//echo "Limit is " . ini_get('max_input_vars') . " variables<br>";
//echo "</pre>";
if ($numpostvars >= $maxnumvars) {
?>
<div style="background-color: orange">PHP has an inherent limit [<?php
echo $maxnumvars;
<html>
<head>
<link rel="icon" type="image/png" href="images/squirrel.png">
<title>NiDB - Manage Public Downloads</title>
</head>
<body>
<div id="wrapper">
<?php
require "functions.php";
require "includes.php";
require "menu.php";
require "nidbapi.php";
/* ----- setup variables ----- */
$action = GetVariable("action");
$id = GetVariable("id");
/* determine action */
if ($action == "changepassword") {
ChangePassword($id);
} elseif ($action == "delete") {
DeleteDownload($id);
} else {
DisplayDownloadList();
}
/* ------------------------------------ functions ------------------------------------ */
/* -------------------------------------------- */
/* ------- ChangePassword --------------------- */
/* -------------------------------------------- */
function ChangePassword($id, $password)
{
/* perform data checks */
<body>
<div id="wrapper">
<?php
require "functions.php";
require "includes.php";
require "menu.php";
//PrintVariable($_POST);
/* ----- setup variables ----- */
$action = GetVariable("action");
$id = GetVariable("id");
$newprojectid = GetVariable("newprojectid");
$studyids = GetVariable("studyids");
$matchidonly = GetVariable("matchidonly");
$modalities = GetVariable("modalities");
$oldnames = GetVariable("oldname");
$newnames = GetVariable("newname");
/* determine action */
switch ($action) {
case 'displayproject':
DisplayProject($id);
break;
case 'changeproject':
ChangeProject($newprojectid, $studyids);
DisplayProject($id);
break;
case 'viewuniqueseries':
DisplayUniqueSeries($id);
break;
case 'viewaltseriessummary':
DisplayAltSeriesSummary($id);
break;
}
/* assuming good authentication, continue */
$action = GetVariable("action");
$uuid = GetVariable("uuid");
$anonymize = GetVariable("anonymize");
$equipmentid = GetVariable("equipmentid");
$siteid = GetVariable("siteid");
$projectid = GetVariable("projectid");
$instanceid = GetVariable("instanceid");
$transactionid = GetVariable("transactionid");
$altuid = GetVariable("altuid");
$instance = GetVariable("instance");
$dataformat = GetVariable("dataformat");
$matchidonly = GetVariable("matchidonly");
$altuids = GetVariable("altuids");
$seriesnotes = GetVariable("seriesnotes");
switch ($action) {
case 'UploadNonDICOM':
UploadDICOM($uuid, $seriesnotes, $altuids, $anonymize, $dataformat, $equipmentid, $siteid, $projectid, $instanceid, $matchidonly, $transactionid);
break;
case 'UploadDICOM':
UploadDICOM($uuid, $seriesnotes, $altuids, $anonymize, $dataformat, $equipmentid, $siteid, $projectid, $instanceid, $matchidonly, $transactionid);
break;
case 'getUID':
GetUIDFromAltUID($altuid);
break;
case 'getInstanceList':
GetInstanceList($u);
break;
case 'getProjectList':
GetProjectList($u, $instance);
<title>NiDB - Manage Sites</title>
</head>
<body>
<div id="wrapper">
<?php
require "functions.php";
require "includes.php";
require "menu.php";
require "nidbapi.php";
/* ----- setup variables ----- */
$action = GetVariable("action");
$id = GetVariable("id");
$sitename = GetVariable("sitename");
$siteaddress = GetVariable("siteaddress");
$sitecontact = GetVariable("sitecontact");
//print_r($_POST);
/* determine action */
if ($action == "editform") {
DisplaySiteForm("edit", $id);
} elseif ($action == "addform") {
DisplaySiteForm("add", "");
} elseif ($action == "update") {
UpdateSite($id, $sitename, $siteaddress, $sitecontact);
DisplaySiteList();
} elseif ($action == "add") {
AddSite($sitename, $siteaddress, $sitecontact);
DisplaySiteList();
} elseif ($action == "delete") {
DeleteSite($id);
} else {
$action = GetVariable("action");
$id = GetVariable("id");
$pipeline_id = GetVariable("pipeline_id");
$protocol = GetVariable("protocol");
$dirformat = GetVariable("dirformat");
$nfsdir = GetVariable("nfsdir");
$anonymize = GetVariable("anonymize");
$gzip = GetVariable("gzip");
$preserveseries = GetVariable("preserveseries");
$groupbyprotocol = GetVariable("groupbyprotocol");
$onlynew = GetVariable("onlynew");
$admin = GetVariable("admin");
$filetype = GetVariable("filetype");
$modality = GetVariable("modality");
$behformat = GetVariable("behformat");
$behdirrootname = GetVariable("behdirrootname");
/* determine action */
if ($action == "editform") {
DisplayPipelineDownloadForm("edit", $id);
} elseif ($action == "addform") {
DisplayPipelineDownloadForm("add", "");
} elseif ($action == "update") {
UpdatePipelineDownload($id, $pipeline_id, $protocol, $dirformat, $nfsdir, $anonymize, $gzip, $preserveseries, $groupbyprotocol, $onlynew, $admin, $filetype, $modality, $behformat, $behdirrootname);
DisplayPipelineDownloadList();
} elseif ($action == "add") {
AddPipelineDownload($pipeline_id, $protocol, $dirformat, $nfsdir, $anonymize, $gzip, $preserveseries, $groupbyprotocol, $onlynew, $admin, $filetype, $modality, $behformat, $behdirrootname);
DisplayPipelineDownloadList();
} elseif ($action == "delete") {
DeletePipelineDownload($id);
} else {
DisplayPipelineDownloadList();
require "includes.php";
require "menu.php";
/* ----- setup variables ----- */
$action = GetVariable("action");
$id = GetVariable("id");
$formtitle = GetVariable("formtitle");
$formdesc = GetVariable("formdesc");
//$formfieldid = GetVariable("formfieldid");
$datatype = GetVariable("datatype");
$field = GetVariable("field");
$order = GetVariable("order");
$values = GetVariable("values");
$linebreaks = GetVariable("linebreaks");
$scored = GetVariable("scored");
/* determine action */
switch ($action) {
case 'editform': DisplayFormForm("edit", $id); break;
case 'viewform': DisplayForm($id); break;
case 'addform': DisplayFormForm("add", ""); break;
case 'updatefields':
UpdateFields($id, $datatype, $field, $order, $values, $linebreaks, $scored);
DisplayFormForm("edit", $id);
break;
case 'update':
UpdateForm($id, $formtitle, $formdesc, $username);
DisplayFormList();
break;
<div id="wrapper">
<?php
//require "config.php";
require "functions.php";
require "includes.php";
require "menu.php";
//PrintVariable($_POST,'POST');
//PrintVariable($_FILES,'FILES');
/* ----- setup variables ----- */
$action = GetVariable("action");
$id = GetVariable("id");
$type = GetVariable('common_type');
$group = GetVariable('common_group');
$name = GetVariable('common_name');
$desc = GetVariable('common_desc');
$value = GetVariable('common_value');
/* determine action */
switch ($action) {
case 'addobject':
AddCommonObject($type, $group, $name, $desc, $value);
DisplayCommonList();
break;
case 'deleteobject':
DeleteCommonObject($id);
DisplayCommonList();
break;
default:
DisplayCommonList();
}
/* ------------------------------------ functions ------------------------------------ */
/* -------------------------------------------- */
//PrintVariable($_POST,'post');
/* ----- setup variables ----- */
$vars['action'] = GetVariable("action");
$vars['id'] = GetVariable("id");
$vars['username'] = GetVariable("username");
$vars['password'] = GetVariable("password");
$vars['fullname'] = GetVariable("fullname");
$vars['email'] = GetVariable("email");
$vars['enabled'] = GetVariable("enabled");
$vars['isadmin'] = GetVariable("isadmin");
$vars['isguest'] = GetVariable("isguest");
$vars['instanceid'] = GetVariable("instanceid");
$vars['dataprojects'] = GetVariable("dataprojects");
$vars['phiprojects'] = GetVariable("phiprojects");
$vars['writedataprojects'] = GetVariable("writedataprojects");
$vars['writephiprojects'] = GetVariable("writephiprojects");
/* determine action */
switch ($vars['action']) {
case 'editform':
DisplayUserForm("edit", $vars['id']);
break;
case 'addform':
DisplayUserForm("add", "");
break;
case 'enable':
EnableUser($vars['id']);
DisplayUserList();
break;
case 'disable':
DisableUser($vars['id']);
DisplayUserList();
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
// You should have received a copy of the GNU General Public License
// along with this program. If not, see <http://www.gnu.org/licenses/>.
// ------------------------------------------------------------------------------
session_start();
require "functions.php";
require "includes.php";
/* ----- setup variables ----- */
$action = GetVariable("action");
$id = GetVariable("id");
$analysisid = GetVariable("analysisid");
$studyid = GetVariable("studyid");
$fileviewtype = GetVariable("fileviewtype");
?>
<body>
<div style="font-size:10pt">
<?php
/* determine action */
switch ($action) {
case 'viewlogs':
DisplayLogs($id, $analysisid);
break;
case 'viewfiles':
DisplayFiles($id, $analysisid, $fileviewtype);
break;
case 'viewresults':
DisplayResults($analysisid, $studyid);
break;
$dd_studyassoc = GetVariable("dd_studyassoc");
$dd_dataformat = GetVariable("dd_dataformat");
$dd_imagetype = GetVariable("dd_imagetype");
$dd_gzip = GetVariable("dd_gzip");
$dd_location = GetVariable("dd_location");
$dd_seriescriteria = GetVariable("dd_seriescriteria");
$dd_numboldreps = GetVariable("dd_numboldreps");
$dd_behformat = GetVariable("dd_behformat");
$dd_behdir = GetVariable("dd_behdir");
$dd_useseriesdirs = GetVariable("dd_useseriesdirs");
$dd_optional = GetVariable("dd_optional");
$dd_preserveseries = GetVariable("dd_preserveseries");
$dd_usephasedir = GetVariable("dd_usephasedir");
$analysisnotes = GetVariable("analysisnotes");
$fileviewtype = GetVariable("fileviewtype");
$returnpage = GetVariable("returnpage");
/* determine action */
switch ($action) {
case 'viewjob':
DisplayJob($id);
break;
case 'editpipeline':
DisplayPipelineForm("edit", $id);
break;
case 'viewpipeline':
DisplayPipeline($id, $version);
break;
case 'addform':
DisplayPipelineForm("add", "");
break;
case 'updatepipelinedef':
<link rel="icon" type="image/png" href="images/squirrel.png">
<title>NiDB - Import Log</title>
</head>
<body>
<div id="wrapper">
<?
require "functions.php";
require "includes.php";
require "nidbapi.php";
require "menu.php";
/* ----- setup variables ----- */
$action = GetVariable("action");
$subjectids = GetVariable("subjectids");
$enrollmentids = GetVariable("enrollmentids");
/* determine action */
switch ($action) {
case 'viewemptysubjects':
DisplayMenu();
DisplayEmptySubjects();
break;
case 'viewemptyenrollments':
DisplayMenu();
DisplayEmptyEnrollments();
break;
case 'viewemptystudies':
DisplayMenu();
DisplayEmptyStudies();
break;
?>
<html>
<head>
<link rel="icon" type="image/png" href="images/squirrel.png">
<title>NiDB - Calendar</title>
</head>
<body>
<div id="wrapper">
<?php
require "functions.php";
require "includes.php";
require "menu.php";
/* ----- setup variables ----- */
$action = GetVariable("action");
if ($_POST["action"] == "") {
$action = $_GET["action"];
} else {
$action = $_POST["action"];
}
if ($_POST["email"] == "") {
$email = $_GET["email"];
} else {
$email = $_POST["email"];
}
if ($_POST["calendar_ids"] == "") {
$calendar_ids = $_GET["calendar_ids"];
} else {
$calendar_ids = $_POST["calendar_ids"];
}
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
// You should have received a copy of the GNU General Public License
// along with this program. If not, see <http://www.gnu.org/licenses/>.
// ------------------------------------------------------------------------------
session_start();
require "functions.php";
$seriesid = GetVariable("seriesid");
$type = GetVariable("type");
$modality = GetVariable("modality");
$filename = GetVariable("filename");
$modality = strtolower($modality);
if ($type == "file") {
header("Content-Description: File Transfer");
header("Content-Disposition: attachment; filename=$filename");
header("Content-Type: text/csv");
header("Content-length: " . filesize($filename) . "\n\n");
header("Content-Transfer-Encoding: binary");
// output data to the browser
readfile($filename);
unlink($filename);
}
else {
/* get the path to the QA info */
$sqlstring = "select a.*, b.study_num, d.uid from $modality" . "_series a left join studies b on a.study_id = b.study_id left join enrollment c on b.enrollment_id = c.enrollment_id left join subjects d on c.subject_id = d.subject_id where a.$modality" . "series_id = $seriesid";
<body>
<div id="wrapper">
<?
require "functions.php";
require "includes.php";
require "menu.php";
//echo "<pre>";
//print_r($_POST);
//echo "</pre>";
/* ----- setup variables ----- */
$action = GetVariable("action");
$groupid = GetVariable("groupid");
$protocol = GetVariable("protocol");
/* determine action */
switch ($action) {
case 'viewlongqc':
DisplayLonitudinalQC($groupid, $protocol);
break;
case 'viewprotocols':
DisplayProtocolList($groupid);
break;
case 'viewgroups':
DisplayGroupList();
break;
default: DisplayGroupList(); break;
}
<html>
<head>
<link rel="icon" type="image/png" href="images/squirrel.png">
<title>Login to NiDB</title>
</head>
<body>
<link rel="stylesheet" type="text/css" href="style.css">
<br><br>
<?php
/* ----- setup variables ----- */
$action = GetVariable("action");
/* edit variables */
$username = GetVariable("username");
$password = GetVariable("password");
//$persistent = GetVariable("persistent");
/* database connection */
$link = mysql_connect($GLOBALS['cfg']['mysqlhost'], $GLOBALS['cfg']['mysqluser'], $GLOBALS['cfg']['mysqlpassword']) or die("Could not connect: " . mysql_error());
mysql_select_db($GLOBALS['cfg']['mysqldatabase']) or die("Could not select database<br>");
/* connect to CAS if enabled */
if ($GLOBALS['cfg']['enablecas']) {
phpCAS::client(CAS_VERSION_2_0, $GLOBALS['cfg']['casserver'], intval($GLOBALS['cfg']['casport']), $GLOBALS['cfg']['cascontext']);
}
/* ----- determine which action to take ----- */
if ($action == "login") {
if (!CheckLogin($username, $password)) {
DisplayLogin("Incorrect login. Make sure Caps Lock is not on");
} else {
header("Location: index.php");
}