function exportArticle(&$journal, &$issue, &$article, &$galley, $outputFile = null)
{
$this->import('EruditExportDom');
$doc =& XMLCustomWriter::createDocument('article', '-//ERUDIT//Erudit Article DTD 3.0.0//EN', 'http://www.erudit.org/dtd/article/3.0.0/en/eruditarticle.dtd');
$articleNode =& EruditExportDom::generateArticleDom($doc, $journal, $issue, $article, $galley);
XMLCustomWriter::appendChild($doc, $articleNode);
if (!empty($outputFile)) {
if (($h = fopen($outputFile, 'wb')) === false) {
return false;
}
fwrite($h, XMLCustomWriter::getXML($doc));
fclose($h);
} else {
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"erudit.xml\"");
XMLCustomWriter::printXML($doc);
}
return true;
}
function &getMetadataPage($pageNum, &$errors)
{
import('xml.XMLCustomWriter');
import('db.DBResultRange');
$journal =& Request::getJournal();
$journalId = $journal->getJournalId();
$falseVar = false;
if ($pageNum < 1) {
return $falseVar;
}
$rangeInfo =& new DBResultRange(GOOGLE_SCHOLAR_ITEMS_PER_PAGE, $pageNum);
$document =& XMLCustomWriter::createDocument('articles', 'articles.dtd');
$articlesNode =& XMLCustomWriter::createElement($document, 'articles');
XMLCustomWriter::appendChild($document, $articlesNode);
$publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO');
$publishedArticles =& $publishedArticleDao->getPublishedArticlesByJournalId($journalId, $rangeInfo);
$issueDao =& DAORegistry::getDAO('IssueDAO');
$issueCache = array();
while ($publishedArticle =& $publishedArticles->next()) {
$articleNode =& XMLCustomWriter::createElement($document, 'article');
XMLCustomWriter::appendChild($articlesNode, $articleNode);
$frontNode =& XMLCustomWriter::createElement($document, 'front');
XMLCustomWriter::appendChild($articleNode, $frontNode);
$journalMetaNode =& XMLCustomWriter::createElement($document, 'journal-meta');
XMLCustomWriter::appendChild($frontNode, $journalMetaNode);
// Journal Metadata
$journal =& Request::getJournal();
XMLCustomWriter::createChildWithText($document, $journalMetaNode, 'journal-title', $journal->getJournalTitle(), true);
XMLCustomWriter::createChildWithText($document, $journalMetaNode, 'abbrev-journal-title', $journal->getLocalizedSetting('initials'), false);
$issn = $journal->getSetting('onlineIssn');
if (empty($issn)) {
array_push($errors, Locale::translate('plugins.gateways.googleScholar.errors.noIssn'));
return $falseVar;
}
XMLCustomWriter::createChildWithText($document, $journalMetaNode, 'issn', $issn, false);
$publisherNode =& XMLCustomWriter::createElement($document, 'publisher');
$publisherName = $this->getSetting($journalId, 'publisher-name');
if (empty($publisherName)) {
array_push($errors, Locale::translate('plugins.gateways.googleScholar.errors.noPublisherName'));
return $falseVar;
}
XMLCustomWriter::createChildWithText($document, $publisherNode, 'publisher-name', $publisherName, true);
XMLCustomWriter::appendChild($journalMetaNode, $publisherNode);
$articleMetaNode =& XMLCustomWriter::createElement($document, 'article-meta');
XMLCustomWriter::appendChild($frontNode, $articleMetaNode);
// Article Metadata
$titleGroupNode =& XMLCustomWriter::createElement($document, 'title-group');
XMLCustomWriter::appendChild($articleMetaNode, $titleGroupNode);
$titles = $publishedArticle->getTitle(null);
$primaryLocale = $journal->getPrimaryLocale();
XMLCustomWriter::createChildWithText($document, $titleGroupNode, 'article-title', $titles[$primaryLocale], true);
unset($titles[$primaryLocale]);
foreach ($titles as $locale => $title) {
XMLCustomWriter::createChildWithText($document, $titleGroupNode, 'trans-title', $title, false);
}
$contribGroupNode =& XMLCustomWriter::createElement($document, 'contrib-group');
XMLCustomWriter::appendChild($articleMetaNode, $contribGroupNode);
foreach ($publishedArticle->getAuthors() as $author) {
$contribNode =& XMLCustomWriter::createElement($document, 'contrib');
XMLCustomWriter::appendChild($contribGroupNode, $contribNode);
XMLCustomWriter::setAttribute($contribNode, 'contrib-type', 'author');
$nameNode =& XMLCustomWriter::createElement($document, 'name');
XMLCustomWriter::appendChild($contribNode, $nameNode);
// Opatan Inc.
XMLCustomWriter::createChildWithText($document, $nameNode, 'surname', $author->getAuthorLastName(), true);
// Given names in the form: FirstName MiddleName, where MiddleName is optional
$name = $author->getAuthorFirstName();
// Opatan Inc. : gets Localized author firstName
if (($middleName = $author->getAuthorMiddleName()) != '') {
$name .= " {$middleName}";
}
// Opatan Inc.
XMLCustomWriter::createChildWithText($document, $nameNode, 'given-names', $name, true);
}
$dateParts = getdate(strtotime($publishedArticle->getDatePublished()));
$pubDateNode =& XMLCustomWriter::createElement($document, 'pub-date');
XMLCustomWriter::appendChild($articleMetaNode, $pubDateNode);
XMLCustomWriter::createChildWithText($document, $pubDateNode, 'day', $dateParts['mday']);
XMLCustomWriter::createChildWithText($document, $pubDateNode, 'month', $dateParts['mon']);
XMLCustomWriter::createChildWithText($document, $pubDateNode, 'year', $dateParts['year']);
$issueId = $publishedArticle->getIssueId();
if (!isset($issueCache[$issueId])) {
$issueCache[$issueId] =& $issueDao->getIssueById($issueId);
}
$issue =& $issueCache[$issueId];
XMLCustomWriter::createChildWithText($document, $articleMetaNode, 'volume', $issue->getVolume());
XMLCustomWriter::createChildWithText($document, $articleMetaNode, 'issue', $issue->getNumber());
$canonicalUriNode =& XMLCustomWriter::createElement($document, 'self-uri');
XMLCustomWriter::setAttribute($canonicalUriNode, 'xlink:href', Request::url(null, 'article', 'viewArticle', array($publishedArticle->getArticleId())));
XMLCustomWriter::appendChild($articleMetaNode, $canonicalUriNode);
foreach ($publishedArticle->getGalleys() as $galley) {
$galleyUriNode =& XMLCustomWriter::createElement($document, 'self-uri');
if ($galley->isHTMLGalley()) {
XMLCustomWriter::setAttribute($galleyUriNode, 'xlink:href', Request::url(null, 'article', 'viewArticle', array($publishedArticle->getArticleId(), $galley->getGalleyId())));
} else {
XMLCustomWriter::setAttribute($galleyUriNode, 'xlink:href', Request::url(null, 'article', 'viewFile', array($publishedArticle->getArticleId(), $galley->getGalleyId())));
}
XMLCustomWriter::appendChild($articleMetaNode, $galleyUriNode);
}
unset($issue);
}
return $document;
}
function &createChildWithText(&$doc, &$node, $name, $value, $appendIfEmpty = true)
{
$childNode = null;
if ($appendIfEmpty || $value != '') {
$childNode =& XMLCustomWriter::createElement($doc, $name);
$textNode =& XMLCustomWriter::createTextNode($doc, $value);
XMLCustomWriter::appendChild($childNode, $textNode);
XMLCustomWriter::appendChild($node, $childNode);
}
return $childNode;
}
/**
* Create a description text element.
*
* @param $workOrProduct string
* @param $relationCode string One of the O4DOI_RELATION_* constants.
* @param $ids array
*
* @return XMLNode|DOMImplementation
*/
function &_relationElement($workOrProduct, $relationCode, $ids)
{
$relationElement =& XMLCustomWriter::createElement($this->getDoc(), "Related{$workOrProduct}");
// Relation code (mandatory)
XMLCustomWriter::createChildWithText($this->getDoc(), $relationElement, 'RelationCode', $relationCode);
// Work/Product ID (mandatory)
foreach ($ids as $idType => $id) {
XMLCustomWriter::appendChild($relationElement, $this->_idElement($workOrProduct, $idType, $id));
}
return $relationElement;
}
/**
* Create an XML element with a text node.
*
* FIXME: Move this to XMLCustomWriter? I leave the decision up to PKP...
*
* @param $name string
* @param $value string
* @param $attributes array An array with the attribute names as array
* keys and attribute values as array values.
*
* @return XMLNode|DOMImplementation
*/
function &createElementWithText($name, $value, $attributes = array())
{
$element =& XMLCustomWriter::createElement($this->getDoc(), $name);
$elementContent =& XMLCustomWriter::createTextNode($this->getDoc(), String::html2text($value));
XMLCustomWriter::appendChild($element, $elementContent);
foreach ($attributes as $attributeName => $attributeValue) {
XMLCustomWriter::setAttribute($element, $attributeName, $attributeValue);
}
return $element;
}
function exportArticles(&$results, $outputFile = null)
{
$this->import('NativeExportDom');
$doc =& XMLCustomWriter::createDocument('articles', NATIVE_DTD_ID, NATIVE_DTD_URL);
$articlesNode =& XMLCustomWriter::createElement($doc, 'articles');
XMLCustomWriter::appendChild($doc, $articlesNode);
foreach ($results as $result) {
$article =& $result['publishedArticle'];
$section =& $result['section'];
$issue =& $result['issue'];
$journal =& $result['journal'];
$articleNode =& NativeExportDom::generateArticleDom($doc, $journal, $issue, $section, $article);
XMLCustomWriter::appendChild($articlesNode, $articleNode);
}
if (!empty($outputFile)) {
if (($h = fopen($outputFile, 'w')) === false) {
return false;
}
fwrite($h, XMLCustomWriter::getXML($doc));
fclose($h);
} else {
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"articles.xml\"");
XMLCustomWriter::printXML($doc);
}
return true;
}
/**
* Create METS:metsHdr for export
*/
function &createmetsHdr($doc)
{
$root =& XMLCustomWriter::createElement($doc, 'METS:metsHdr');
XMLCustomWriter::setAttribute($root, 'CREATEDATE', date('c'));
XMLCustomWriter::setAttribute($root, 'LASTMODDATE', date('c'));
$agentNode =& XMLCustomWriter::createElement($doc, 'METS:agent');
XMLCustomWriter::setAttribute($agentNode, 'ROLE', 'DISSEMINATOR');
XMLCustomWriter::setAttribute($agentNode, 'TYPE', 'ORGANIZATION');
$organization = Request::getUserVar('organization');
if ($organization == '') {
$siteDao =& DAORegistry::getDAO('SiteDAO');
$site = $siteDao->getSite();
$organization = $site->getLocalizedTitle();
}
XMLCustomWriter::createChildWithText($doc, $agentNode, 'METS:name', $organization, false);
XMLCustomWriter::appendChild($root, $agentNode);
$agentNode2 =& XMLCustomWriter::createElement($doc, 'METS:agent');
XMLCustomWriter::setAttribute($agentNode2, 'ROLE', 'CREATOR');
XMLCustomWriter::setAttribute($agentNode2, 'TYPE', 'OTHER');
XMLCustomWriter::createChildWithText($doc, $agentNode2, 'METS:name', MetsExportDom::getCreatorString(), false);
XMLCustomWriter::appendChild($root, $agentNode2);
return $root;
}
function &generateArticleDom(&$doc, &$journal, &$issue, &$section, &$article)
{
// register the editor submission DAO for use later
$editorSubmissionDao =& DAORegistry::getDAO('EditorSubmissionDAO');
/* --- Article --- */
$root =& XMLCustomWriter::createElement($doc, 'Article');
/* --- Journal --- */
$journalNode =& XMLCustomWriter::createElement($doc, 'Journal');
XMLCustomWriter::appendChild($root, $journalNode);
$publisherInstitution = $journal->getSetting('publisherInstitution');
$publisherNode = XMLCustomWriter::createChildWithText($doc, $journalNode, 'PublisherName', $publisherInstitution);
XMLCustomWriter::createChildWithText($doc, $journalNode, 'JournalTitle', $journal->getLocalizedTitle());
// check various ISSN fields to create the ISSN tag
if ($journal->getSetting('printIssn') != '') {
$ISSN = $journal->getSetting('printIssn');
} elseif ($journal->getSetting('issn') != '') {
$ISSN = $journal->getSetting('issn');
} elseif ($journal->getSetting('onlineIssn') != '') {
$ISSN = $journal->getSetting('onlineIssn');
} else {
$ISSN = '';
}
if ($ISSN != '') {
XMLCustomWriter::createChildWithText($doc, $journalNode, 'Issn', $ISSN);
}
XMLCustomWriter::createChildWithText($doc, $journalNode, 'Volume', $issue->getVolume());
XMLCustomWriter::createChildWithText($doc, $journalNode, 'Issue', $issue->getNumber(), false);
$datePublished = $article->getDatePublished();
if (!$datePublished) {
$datePublished = $issue->getDatePublished();
}
if ($datePublished) {
$pubDateNode =& PubMedExportDom::generatePubDateDom($doc, $datePublished, 'epublish');
XMLCustomWriter::appendChild($journalNode, $pubDateNode);
}
/* --- Replaces --- */
// this creates a blank replaces tag since OJS doesn't contain PMID metadata
// XMLCustomWriter::createChildWithText($doc, $root, 'Replaces', '');
/* --- ArticleTitle / VernacularTitle --- */
// there is some ambiguity between whether to use
// article->getlanguage or journal->getlocale
// PubMed requires english titles for ArticleTitle
$language = $article->getLanguage();
if ($language == 'en' || $language == '') {
XMLCustomWriter::createChildWithText($doc, $root, 'ArticleTitle', $article->getLocalizedTitle());
} else {
XMLCustomWriter::createChildWithText($doc, $root, 'VernacularTitle', $article->getLocalizedTitle());
}
/* --- FirstPage / LastPage --- */
// there is some ambiguity for online journals as to what
// "page numbers" are; for example, some journals (eg. JMIR)
// use the "e-location ID" as the "page numbers" in PubMed
$pages = $article->getPages();
if (preg_match("/([0-9]+)\\s*-\\s*([0-9]+)/i", $pages, $matches)) {
// simple pagination (eg. "pp. 3-8")
XMLCustomWriter::createChildWithText($doc, $root, 'FirstPage', $matches[1]);
XMLCustomWriter::createChildWithText($doc, $root, 'LastPage', $matches[2]);
} elseif (preg_match("/(e[0-9]+)\\s*-\\s*(e[0-9]+)/i", $pages, $matches)) {
// e9 - e14, treated as page ranges
XMLCustomWriter::createChildWithText($doc, $root, 'FirstPage', $matches[1]);
XMLCustomWriter::createChildWithText($doc, $root, 'LastPage', $matches[2]);
} elseif (preg_match("/(e[0-9]+)/i", $pages, $matches)) {
// single elocation-id (eg. "e12")
XMLCustomWriter::createChildWithText($doc, $root, 'FirstPage', $matches[1]);
XMLCustomWriter::createChildWithText($doc, $root, 'LastPage', $matches[1]);
} else {
// we need to insert something, so use the best ID possible
XMLCustomWriter::createChildWithText($doc, $root, 'FirstPage', $article->getBestArticleId($journal));
XMLCustomWriter::createChildWithText($doc, $root, 'LastPage', $article->getBestArticleId($journal));
}
/* --- DOI --- */
if ($doi = $article->getPubId('doi')) {
$doiNode =& XMLCustomWriter::createChildWithText($doc, $root, 'ELocationID', $doi, false);
XMLCustomWriter::setAttribute($doiNode, 'EIdType', 'doi');
}
/* --- Language --- */
XMLCustomWriter::createChildWithText($doc, $root, 'Language', strtoupper($article->getLanguage()), false);
/* --- AuthorList --- */
$authorListNode =& XMLCustomWriter::createElement($doc, 'AuthorList');
XMLCustomWriter::appendChild($root, $authorListNode);
$authorIndex = 0;
foreach ($article->getAuthors() as $author) {
$authorNode =& PubMedExportDom::generateAuthorDom($doc, $author, $authorIndex++);
XMLCustomWriter::appendChild($authorListNode, $authorNode);
}
/* --- ArticleIdList --- */
// Pubmed will accept two types of article identifier: pii and doi
// how this is handled is journal-specific, and will require either
// configuration in the plugin, or an update to the core code.
// this is also related to DOI-handling within OJS
if ($article->getPubId('publisher-id')) {
$articleIdListNode =& XMLCustomWriter::createElement($doc, 'ArticleIdList');
XMLCustomWriter::appendChild($root, $articleIdListNode);
$articleIdNode =& XMLCustomWriter::createChildWithText($doc, $articleIdListNode, 'ArticleId', $article->getPubId('publisher-id'));
XMLCustomWriter::setAttribute($articleIdNode, 'IdType', 'pii');
}
/* --- History --- */
$historyNode =& XMLCustomWriter::createElement($doc, 'History');
XMLCustomWriter::appendChild($root, $historyNode);
// date manuscript received for review
$receivedNode =& PubMedExportDom::generatePubDateDom($doc, $article->getDateSubmitted(), 'received');
XMLCustomWriter::appendChild($historyNode, $receivedNode);
// accepted for publication
$editordecisions = $editorSubmissionDao->getEditorDecisions($article->getId());
// if there are multiple decisions, make sure we get the accepted date
$editordecision = array_pop($editordecisions);
while ($editordecision['decision'] != SUBMISSION_EDITOR_DECISION_ACCEPT && count($editordecisions) > 0) {
$editordecision = array_pop($editordecisions);
}
if ($editordecision != '') {
$acceptedNode =& PubMedExportDom::generatePubDateDom($doc, $editordecision['dateDecided'], 'accepted');
XMLCustomWriter::appendChild($historyNode, $acceptedNode);
}
// article revised by publisher or author
// check if there is a revised version; if so, generate a revised tag
$revisedFileID = $article->getRevisedFileId();
if (!empty($revisedFileID)) {
$articleFileDao =& DAORegistry::getDAO('ArticleFileDAO');
$articleFile =& $articleFileDao->getArticleFile($revisedFileID);
if ($articleFile) {
$revisedNode =& PubMedExportDom::generatePubDateDom($doc, $articleFile->getDateModified(), 'revised');
XMLCustomWriter::appendChild($historyNode, $revisedNode);
}
}
/* --- Abstract --- */
if ($article->getLocalizedAbstract()) {
$abstractNode = XMLCustomWriter::createChildWithText($doc, $root, 'Abstract', strip_tags($article->getLocalizedAbstract()), false);
}
return $root;
}
/**
* Construct a sitemap for a scheduled conference
* @return XMLNode
*/
function createSchedConfSitemap()
{
$publishedPaperDao =& DAORegistry::getDAO('PublishedPaperDAO');
$galleyDao =& DAORegistry::getDAO('PaperGalleyDAO');
$conference =& Request::getConference();
$conferenceId = $conference->getId();
$schedConf = Request::getSchedConf();
$doc =& XMLCustomWriter::createDocument();
$root =& XMLCustomWriter::createElement($doc, 'urlset');
XMLCustomWriter::setAttribute($root, 'xmlns', SITEMAP_XSD_URL);
// Sched. Conf. home
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath())));
// About page
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'about')));
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'about', 'submissions')));
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'about', 'siteMap')));
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'about', 'aboutThisPublishingSystem')));
// Search
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'search')));
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'search', 'authors')));
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'search', 'titles')));
// Conference Information
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'schedConf', 'overview')));
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'schedConf', 'trackPolicies')));
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'schedConf', 'presentations')));
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'schedConf', 'accommodation')));
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'schedConf', 'location')));
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'schedConf', 'organizingTeam')));
// Individual Papers
$publishedPapers =& $publishedPaperDao->getPublishedPapers($schedConf->getId());
while ($paper =& $publishedPapers->next()) {
// Abstract
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'paper', 'view', $paper->getId())));
// Galley files
$galleys = $galleyDao->getGalleysByPaper($paper->getId());
foreach ($galleys as $galley) {
XMLCustomWriter::appendChild($root, SitemapHandler::createUrlTree($doc, Request::url($conference->getPath(), $schedConf->getPath(), 'paper', 'view', array($paper->getId(), $galley->getId()))));
}
}
XMLCustomWriter::appendChild($doc, $root);
return $doc;
}
function &generatePaperDom(&$doc, &$conference, &$track, &$paper)
{
// register the editor submission DAO for use later
// $editorSubmissionDao =& DAORegistry::getDAO('EditorSubmissionDAO');
/* --- MeetingAbstract --- */
$root =& XMLCustomWriter::createElement($doc, 'MeetingAbstract');
XMLCustomWriter::setAttribute($root, 'Status', 'Completed');
/* --- DateCreated --- */
$dateNode =& XMLCustomWriter::createElement($doc, 'DateCreated');
XMLCustomWriter::appendChild($root, $dateNode);
XMLCustomWriter::createChildWithText($doc, $dateNode, 'Year', date('Y'));
XMLCustomWriter::createChildWithText($doc, $dateNode, 'Month', date('m'));
XMLCustomWriter::createChildWithText($doc, $dateNode, 'Day', date('d'));
/* --- Article/Paper --- */
$articleNode =& XMLCustomWriter::createElement($doc, 'Article');
XMLCustomWriter::setAttribute($articleNode, 'PubModel', 'Electronic');
XMLCustomWriter::appendChild($root, $articleNode);
/* --- Journal/Book --- */
// FIXME: at the moment this is a null element required by NLM
$journalNode =& XMLCustomWriter::createChildWithText($doc, $articleNode, 'Journal', null);
$journalIssueNode =& XMLCustomWriter::createElement($doc, 'JournalIssue');
XMLCustomWriter::setAttribute($journalIssueNode, 'CitedMedium', 'Internet');
XMLCustomWriter::appendChild($journalNode, $journalIssueNode);
$journalDateNode =& XMLCustomWriter::createElement($doc, 'PubDate');
XMLCustomWriter::appendChild($journalIssueNode, $journalDateNode);
XMLCustomWriter::createChildWithText($doc, $journalDateNode, 'MedlineDate', date('Y'));
/* --- ArticleTitle --- */
// NLM requires english titles for PaperTitle
XMLCustomWriter::createChildWithText($doc, $articleNode, 'ArticleTitle', $paper->getLocalizedTitle());
/* --- Pagination --- */
// If there is no page number, then use abstract number
$paginationNode =& XMLCustomWriter::createElement($doc, 'Pagination');
XMLCustomWriter::appendChild($articleNode, $paginationNode);
$pages = $paper->getPages();
if (preg_match("/([0-9]+)\\s*-\\s*([0-9]+)/i", $pages, $matches)) {
// simple pagination (eg. "pp. 3- 8")
XMLCustomWriter::createChildWithText($doc, $paginationNode, 'MedlinePgn', $matches[1] . '-' . $matches[2]);
} elseif (preg_match("/(e[0-9]+)/i", $pages, $matches)) {
// elocation-id (eg. "e12")
XMLCustomWriter::createChildWithText($doc, $paginationNode, 'MedlinePgn', $matches[1]);
} else {
// we need to insert something, so use the best ID possible
XMLCustomWriter::createChildWithText($doc, $paginationNode, 'MedlinePgn', $paper->getBestPaperId($conference));
}
/* --- Abstract --- */
$abstractNode =& XMLCustomWriter::createElement($doc, 'Abstract');
XMLCustomWriter::appendChild($articleNode, $abstractNode);
XMLCustomWriter::createChildWithText($doc, $abstractNode, 'AbstractText', strip_tags($paper->getLocalizedAbstract()), false);
/* --- Affiliation --- */
$sponsor = $paper->getLocalizedSponsor();
if ($sponsor != '') {
XMLCustomWriter::createChildWithText($doc, $articleNode, 'Affiliation', $sponsor);
}
/* --- AuthorList --- */
$authorListNode =& XMLCustomWriter::createElement($doc, 'AuthorList');
XMLCustomWriter::setAttribute($authorListNode, 'CompleteYN', 'Y');
XMLCustomWriter::appendChild($articleNode, $authorListNode);
foreach ($paper->getAuthors() as $author) {
$authorNode =& NLMExportDom::generateAuthorDom($doc, $author);
XMLCustomWriter::appendChild($authorListNode, $authorNode);
}
/* --- Conference --- */
$conferenceNode =& XMLCustomWriter::createElement($doc, 'Author');
XMLCustomWriter::appendChild($authorListNode, $conferenceNode);
XMLCustomWriter::createChildWithText($doc, $conferenceNode, 'CollectiveName', $conference->getConferenceTitle());
// OtherInformation element goes here with location for current conference
/* --- Language --- */
XMLCustomWriter::createChildWithText($doc, $articleNode, 'Language', strtolower($paper->getLanguage()), false);
/* --- MedlineJournalInfo--- */
// FIXME: at the moment this is a null element required by NLM
$journalInfoNode =& XMLCustomWriter::createChildWithText($doc, $root, 'MedlineJournalInfo', null);
XMLCustomWriter::createChildWithText($doc, $journalInfoNode, 'MedlineTA', null);
return $root;
}
/**
* Export public identifiers of one or more issues.
* @param $journal object
* @param $issues array
* @param $outputFile xml file containing the exported public identifiers
*/
function exportPubIdsForIssues($journal, $issues, $outputFile = null)
{
$doc =& XMLCustomWriter::createDocument('pubIds', PID_DTD_URL, PID_DTD_URL);
$pubIdsNode =& XMLCustomWriter::createElement($doc, 'pubIds');
XMLCustomWriter::appendChild($doc, $pubIdsNode);
foreach ($issues as $issue) {
$this->generatePubId($doc, $pubIdsNode, $issue, $journal->getId());
$publishedArticleDao = DAORegistry::getDAO('PublishedArticleDAO');
foreach ($publishedArticleDao->getPublishedArticles($issue->getId()) as $publishedArticle) {
$this->generatePubId($doc, $pubIdsNode, $publishedArticle, $journal->getId());
$articleGalleyDao = DAORegistry::getDAO('ArticleGalleyDAO');
$galleys = $articleGalleyDao->getBySubmissionId($publishedArticle->getId());
while ($galley = $galleys->next()) {
$this->generatePubId($doc, $pubIdsNode, $galley, $journal->getId());
}
}
}
if (!empty($outputFile)) {
if (($h = fopen($outputFile, 'w')) === false) {
return false;
}
fwrite($h, XMLCustomWriter::getXML($doc));
fclose($h);
} else {
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"pubIds.xml\"");
XMLCustomWriter::printXML($doc);
}
return true;
}
/**
* Generate the journal_article node (the heart of the file).
* @param $doc XMLNode
* @param $journal Journal
* @param $issue Issue
* @param $section Section
* @param $article Article
* @return XMLNode
*/
function &generateJournalArticleDom(&$doc, &$journal, &$issue, &$section, &$article)
{
// Create the base node
$journalArticleNode =& XMLCustomWriter::createElement($doc, 'journal_article');
XMLCustomWriter::setAttribute($journalArticleNode, 'publication_type', 'full_text');
/* Titles */
$titlesNode =& XMLCustomWriter::createElement($doc, 'titles');
XMLCustomWriter::createChildWithText($doc, $titlesNode, 'title', $article->getLocalizedTitle());
XMLCustomWriter::appendChild($journalArticleNode, $titlesNode);
$contributorsNode =& XMLCustomWriter::createElement($doc, 'contributors');
/* AuthorList */
$isFirst = true;
foreach ($article->getAuthors() as $author) {
$authorNode =& CrossRefExportDom::generateAuthorDom($doc, $author, $isFirst);
$isFirst = false;
XMLCustomWriter::appendChild($contributorsNode, $authorNode);
}
XMLCustomWriter::appendChild($journalArticleNode, $contributorsNode);
/* publication date of issue */
if ($issue->getDatePublished()) {
$publicationDateNode =& CrossRefExportDom::generatePublisherDateDom($doc, $issue->getDatePublished());
XMLCustomWriter::appendChild($journalArticleNode, $publicationDateNode);
}
/* publisher_item is the article pages */
if ($article->getPages() != '') {
$publisherItemNode =& XMLCustomWriter::createElement($doc, 'publisher_item');
XMLCustomWriter::createChildWithText($doc, $publisherItemNode, 'item_number', $article->getPages());
XMLCustomWriter::appendChild($journalArticleNode, $publisherItemNode);
}
return $journalArticleNode;
}
function &generateSuppFileDom(&$doc, &$journal, &$issue, &$article, &$suppFile)
{
$root =& XMLCustomWriter::createElement($doc, 'supplemental_file');
NativeExportDom::generatePubId($doc, $root, $suppFile, $issue);
// FIXME: These should be constants!
switch ($suppFile->getType()) {
case __('author.submit.suppFile.researchInstrument'):
$suppFileType = 'research_instrument';
break;
case __('author.submit.suppFile.researchMaterials'):
$suppFileType = 'research_materials';
break;
case __('author.submit.suppFile.researchResults'):
$suppFileType = 'research_results';
break;
case __('author.submit.suppFile.transcripts'):
$suppFileType = 'transcripts';
break;
case __('author.submit.suppFile.dataAnalysis'):
$suppFileType = 'data_analysis';
break;
case __('author.submit.suppFile.dataSet'):
$suppFileType = 'data_set';
break;
case __('author.submit.suppFile.sourceText'):
$suppFileType = 'source_text';
break;
default:
$suppFileType = 'other';
break;
}
XMLCustomWriter::setAttribute($root, 'type', $suppFileType);
XMLCustomWriter::setAttribute($root, 'public_id', $suppFile->getPubId('publisher-id'), false);
XMLCustomWriter::setAttribute($root, 'language', $suppFile->getLanguage(), false);
XMLCustomWriter::setAttribute($root, 'show_reviewers', $suppFile->getShowReviewers() ? 'true' : 'false');
if (is_array($suppFile->getTitle(null))) {
foreach ($suppFile->getTitle(null) as $locale => $title) {
$titleNode =& XMLCustomWriter::createChildWithText($doc, $root, 'title', $title, false);
if ($titleNode) {
XMLCustomWriter::setAttribute($titleNode, 'locale', $locale);
}
unset($titleNode);
}
}
if (is_array($suppFile->getCreator(null))) {
foreach ($suppFile->getCreator(null) as $locale => $creator) {
$creatorNode =& XMLCustomWriter::createChildWithText($doc, $root, 'creator', $creator, false);
if ($creatorNode) {
XMLCustomWriter::setAttribute($creatorNode, 'locale', $locale);
}
unset($creatorNode);
}
}
if (is_array($suppFile->getSubject(null))) {
foreach ($suppFile->getSubject(null) as $locale => $subject) {
$subjectNode =& XMLCustomWriter::createChildWithText($doc, $root, 'subject', $subject, false);
if ($subjectNode) {
XMLCustomWriter::setAttribute($subjectNode, 'locale', $locale);
}
unset($subjectNode);
}
}
if ($suppFileType == 'other') {
if (is_array($suppFile->getTypeOther(null))) {
foreach ($suppFile->getTypeOther(null) as $locale => $typeOther) {
$typeOtherNode =& XMLCustomWriter::createChildWithText($doc, $root, 'type_other', $typeOther, false);
if ($typeOtherNode) {
XMLCustomWriter::setAttribute($typeOtherNode, 'locale', $locale);
}
unset($typeOtherNode);
}
}
}
if (is_array($suppFile->getDescription(null))) {
foreach ($suppFile->getDescription(null) as $locale => $description) {
$descriptionNode =& XMLCustomWriter::createChildWithText($doc, $root, 'description', $description, false);
if ($descriptionNode) {
XMLCustomWriter::setAttribute($descriptionNode, 'locale', $locale);
}
unset($descriptionNode);
}
}
if (is_array($suppFile->getPublisher(null))) {
foreach ($suppFile->getPublisher(null) as $locale => $publisher) {
$publisherNode =& XMLCustomWriter::createChildWithText($doc, $root, 'publisher', $publisher, false);
if ($publisherNode) {
XMLCustomWriter::setAttribute($publisherNode, 'locale', $locale);
}
unset($publisherNode);
}
}
if (is_array($suppFile->getSponsor(null))) {
foreach ($suppFile->getSponsor(null) as $locale => $sponsor) {
$sponsorNode =& XMLCustomWriter::createChildWithText($doc, $root, 'sponsor', $sponsor, false);
if ($sponsorNode) {
XMLCustomWriter::setAttribute($sponsorNode, 'locale', $locale);
}
unset($sponsorNode);
}
}
XMLCustomWriter::createChildWithText($doc, $root, 'date_created', NativeExportDom::formatDate($suppFile->getDateCreated()), false);
if (is_array($suppFile->getSource(null))) {
foreach ($suppFile->getSource(null) as $locale => $source) {
$sourceNode =& XMLCustomWriter::createChildWithText($doc, $root, 'source', $source, false);
if ($sourceNode) {
XMLCustomWriter::setAttribute($sourceNode, 'locale', $locale);
}
unset($sourceNode);
}
}
import('classes.file.ArticleFileManager');
$articleFileManager = new ArticleFileManager($article->getId());
$fileNode =& XMLCustomWriter::createElement($doc, 'file');
XMLCustomWriter::appendChild($root, $fileNode);
if ($suppFile->getRemoteURL()) {
$remoteNode =& XMLCustomWriter::createElement($doc, 'remote');
XMLCustomWriter::appendChild($fileNode, $remoteNode);
XMLCustomWriter::setAttribute($remoteNode, 'src', $suppFile->getRemoteURL());
} else {
$embedNode =& XMLCustomWriter::createChildWithText($doc, $fileNode, 'embed', base64_encode($articleFileManager->readFile($suppFile->getFileId())));
XMLCustomWriter::setAttribute($embedNode, 'filename', $suppFile->getOriginalFileName());
XMLCustomWriter::setAttribute($embedNode, 'encoding', 'base64');
XMLCustomWriter::setAttribute($embedNode, 'mime_type', $suppFile->getFileType());
}
return $root;
}
/**
* Index rebuild cleanup: mark select options as clean.
*/
function callbackFinish($hookName, $args)
{
$searchFormElementDao =& DAORegistry::getDAO('SearchFormElementDAO');
$searchFormElements =& $searchFormElementDao->getSearchFormElements();
while ($searchFormElement =& $searchFormElements->next()) {
$searchFormElement->setIsClean(true);
$searchFormElementDao->updateSearchFormElement($searchFormElement);
unset($searchFormElement);
}
if ($this->isUsingSolr()) {
import('lib.pkp.classes.xml.XMLCustomWriter');
$doc =& XMLCustomWriter::createDocument('commit', SOLR_DTD_ID, SOLR_DTD_URL);
$docNode =& XMLCustomWriter::createElement($doc, 'commit');
XMLCustomWriter::appendChild($doc, $docNode);
$this->solrQuery($doc);
unset($doc);
$doc =& XMLCustomWriter::createDocument('optimize', SOLR_DTD_ID, SOLR_DTD_URL);
$docNode =& XMLCustomWriter::createElement($doc, 'optimize');
XMLCustomWriter::appendChild($doc, $docNode);
$this->solrQuery($doc);
unset($doc);
} else {
$index =& $this->getIndex();
$index->optimize();
}
}
function exportPapers(&$results, $outputFile = null)
{
$this->import('NLMExportDom');
$doc =& NLMExportDom::generateNLMDom();
$paperSetNode =& NLMExportDom::generatePaperSetDom($doc);
foreach ($results as $result) {
$conference =& $result['conference'];
$track =& $result['track'];
$paper =& $result['publishedPaper'];
$paperNode =& NLMExportDom::generatePaperDom($doc, $conference, $track, $paper);
XMLCustomWriter::appendChild($paperSetNode, $paperNode);
}
if (!empty($outputFile)) {
if (($h = fopen($outputFile, 'w')) === false) {
return false;
}
fwrite($h, XMLCustomWriter::getXML($doc));
fclose($h);
} else {
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"nlm.xml\"");
XMLCustomWriter::printXML($doc);
//echo '<pre>'.htmlentities(preg_replace('/></', ">\n<", XMLCustomWriter::getXML($doc))).'</pre>';
}
return true;
}
/**
* Generate the DOM tree for a given article.
* @param $doc object DOM object
* @param $journal object Journal
* @param $issue object Issue
* @param $section object Section
* @param $article object Article
*/
function &generateArticleDom(&$doc, &$journal, &$issue, &$section, &$article)
{
$root =& XMLCustomWriter::createElement($doc, 'record');
/* --- Article Language --- */
XMLCustomWriter::createChildWithText($doc, $root, 'language', DOAJExportDom::mapLang($article->getLanguage()), false);
/* --- Publisher name (i.e. institution name) --- */
XMLCustomWriter::createChildWithText($doc, $root, 'publisher', $journal->getSetting('publisherInstitution'), false);
/* --- Journal's title --- */
XMLCustomWriter::createChildWithText($doc, $root, 'journalTitle', $journal->getLocalizedTitle(), false);
/* --- Identification Numbers --- */
XMLCustomWriter::createChildWithText($doc, $root, 'issn', $journal->getSetting('printIssn'), false);
XMLCustomWriter::createChildWithText($doc, $root, 'eissn', $journal->getSetting('onlineIssn'), false);
/* --- Article's publication date, volume, issue, DOI --- */
XMLCustomWriter::createChildWithText($doc, $root, 'publicationDate', DOAJExportDom::formatDate($issue->getDatePublished()), false);
XMLCustomWriter::createChildWithText($doc, $root, 'volume', $issue->getVolume(), false);
XMLCustomWriter::createChildWithText($doc, $root, 'issue', $issue->getNumber(), false);
/** --- FirstPage / LastPage (from PubMed plugin)---
* there is some ambiguity for online journals as to what
* "page numbers" are; for example, some journals (eg. JMIR)
* use the "e-location ID" as the "page numbers" in PubMed
*/
$pages = $article->getPages();
if (preg_match("/([0-9]+)\\s*-\\s*([0-9]+)/i", $pages, $matches)) {
// simple pagination (eg. "pp. 3-8")
XMLCustomWriter::createChildWithText($doc, $root, 'startPage', $matches[1]);
XMLCustomWriter::createChildWithText($doc, $root, 'endPage', $matches[2]);
} elseif (preg_match("/(e[0-9]+)/i", $pages, $matches)) {
// elocation-id (eg. "e12")
XMLCustomWriter::createChildWithText($doc, $root, 'startPage', $matches[1]);
XMLCustomWriter::createChildWithText($doc, $root, 'endPage', $matches[1]);
}
XMLCustomWriter::createChildWithText($doc, $root, 'doi', $article->getPubId('doi'), false);
/* --- Article's publication date, volume, issue, DOI --- */
XMLCustomWriter::createChildWithText($doc, $root, 'publisherRecordId', $article->getPublishedArticleId(), false);
XMLCustomWriter::createChildWithText($doc, $root, 'documentType', $article->getLocalizedType(), false);
/* --- Article title --- */
foreach ((array) $article->getTitle(null) as $locale => $title) {
if (empty($title)) {
continue;
}
$titleNode =& XMLCustomWriter::createChildWithText($doc, $root, 'title', $title);
if (strlen($locale) == 5) {
XMLCustomWriter::setAttribute($titleNode, 'language', DOAJExportDom::mapLang(String::substr($locale, 0, 2)));
}
}
/* --- Authors and affiliations --- */
$authors =& XMLCustomWriter::createElement($doc, 'authors');
XMLCustomWriter::appendChild($root, $authors);
$affilList = DOAJExportDom::generateAffiliationsList($article->getAuthors());
foreach ($article->getAuthors() as $author) {
$authorNode =& DOAJExportDom::generateAuthorDom($doc, $root, $issue, $article, $author, $affilList);
XMLCustomWriter::appendChild($authors, $authorNode);
unset($authorNode);
}
if (!empty($affilList[0])) {
$affils =& XMLCustomWriter::createElement($doc, 'affiliationsList');
XMLCustomWriter::appendChild($root, $affils);
for ($i = 0; $i < count($affilList); $i++) {
$affilNode =& XMLCustomWriter::createChildWithText($doc, $affils, 'affiliationName', $affilList[$i]);
XMLCustomWriter::setAttribute($affilNode, 'affiliationId', $i);
unset($affilNode);
}
}
/* --- Abstract --- */
foreach ((array) $article->getAbstract(null) as $locale => $abstract) {
if (empty($abstract)) {
continue;
}
$abstractNode =& XMLCustomWriter::createChildWithText($doc, $root, 'abstract', $abstract);
if (strlen($locale) == 5) {
XMLCustomWriter::setAttribute($abstractNode, 'language', DOAJExportDom::mapLang(String::substr($locale, 0, 2)));
}
}
/* --- FullText URL --- */
$fullTextUrl =& XMLCustomWriter::createChildWithText($doc, $root, 'fullTextUrl', Request::url(null, 'article', 'view', $article->getId()));
XMLCustomWriter::setAttribute($fullTextUrl, 'format', 'html');
/* --- Keywords --- */
$keywords =& XMLCustomWriter::createElement($doc, 'keywords');
XMLCustomWriter::appendChild($root, $keywords);
$subjects = array_map('trim', explode(';', $article->getLocalizedSubject()));
foreach ($subjects as $keyword) {
XMLCustomWriter::createChildWithText($doc, $keywords, 'keyword', $keyword, false);
}
return $root;
}
function exportIssues(&$journal, &$issues, $outputFile = null)
{
$this->import('PubMedExportDom');
$doc =& PubMedExportDom::generatePubMedDom();
$articleSetNode =& PubMedExportDom::generateArticleSetDom($doc);
$sectionDao = DAORegistry::getDAO('SectionDAO');
$publishedArticleDao = DAORegistry::getDAO('PublishedArticleDAO');
foreach ($issues as $issue) {
foreach ($sectionDao->getByIssueId($issue->getId()) as $section) {
foreach ($publishedArticleDao->getPublishedArticlesBySectionId($section->getId(), $issue->getId()) as $article) {
$articleNode = PubMedExportDom::generateArticleDom($doc, $journal, $issue, $section, $article);
XMLCustomWriter::appendChild($articleSetNode, $articleNode);
}
}
}
if (!empty($outputFile)) {
if (($h = fopen($outputFile, 'w')) === false) {
return false;
}
fwrite($h, XMLCustomWriter::getXML($doc));
fclose($h);
} else {
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"pubmed.xml\"");
XMLCustomWriter::printXML($doc);
}
return true;
}
/**
* Generate doi_data element - this is what assigns the DOI
* @param $doc XMLNode
* @param $DOI string
* @param $url string
* @param $galleys array
*/
function &_generateDOIdataDom(&$doc, $DOI, $url, $galleys = null)
{
$request = Application::getRequest();
$journal = $request->getJournal();
$DOIdataNode =& XMLCustomWriter::createElement($doc, 'doi_data');
XMLCustomWriter::createChildWithText($doc, $DOIdataNode, 'doi', $DOI);
XMLCustomWriter::createChildWithText($doc, $DOIdataNode, 'resource', $url);
/* article galleys */
if ($galleys) {
$collectionNode = XMLCustomWriter::createElement($doc, 'collection');
XMLCustomWriter::setAttribute($collectionNode, 'property', 'text-mining');
XMLCustomWriter::appendChild($DOIdataNode, $collectionNode);
foreach ($galleys as $galley) {
$itemNode = XMLCustomWriter::createElement($doc, 'item');
XMLCustomWriter::appendChild($collectionNode, $itemNode);
$resourceNode = XMLCustomWriter::createElement($doc, 'resource');
XMLCustomWriter::appendChild($itemNode, $resourceNode);
XMLCustomWriter::setAttribute($resourceNode, 'mime_type', $galley->getFileType());
$urlNode = XMLCustomWriter::createTextNode($doc, $request->url(null, 'article', 'viewFile', array($galley->getArticleId(), $galley->getBestGalleyId($journal))));
XMLCustomWriter::appendChild($resourceNode, $urlNode);
}
}
return $DOIdataNode;
}
function &exportUsers(&$journal, &$users, $allowedRoles = null)
{
$roleDao =& DAORegistry::getDAO('RoleDAO');
$doc =& XMLCustomWriter::createDocument('users', USERS_DTD_ID, USERS_DTD_URL);
$root =& XMLCustomWriter::createElement($doc, 'users');
foreach ($users as $user) {
$userNode =& XMLCustomWriter::createElement($doc, 'user');
XMLCustomWriter::createChildWithText($doc, $userNode, 'username', $user->getUserName(), false);
$passwordNode =& XMLCustomWriter::createChildWithText($doc, $userNode, 'password', $user->getPassword());
XMLCustomWriter::setAttribute($passwordNode, 'encrypted', Config::getVar('security', 'encryption'));
XMLCustomWriter::createChildWithText($doc, $userNode, 'salutation', $user->getSalutation(), false);
XMLCustomWriter::createChildWithText($doc, $userNode, 'first_name', $user->getFirstName());
XMLCustomWriter::createChildWithText($doc, $userNode, 'middle_name', $user->getMiddleName(), false);
XMLCustomWriter::createChildWithText($doc, $userNode, 'last_name', $user->getLastName());
XMLCustomWriter::createChildWithText($doc, $userNode, 'initials', $user->getInitials(), false);
XMLCustomWriter::createChildWithText($doc, $userNode, 'gender', $user->getGender(), false);
XMLCustomWriter::createChildWithText($doc, $userNode, 'email', $user->getEmail());
XMLCustomWriter::createChildWithText($doc, $userNode, 'url', $user->getUrl(), false);
XMLCustomWriter::createChildWithText($doc, $userNode, 'phone', $user->getPhone(), false);
XMLCustomWriter::createChildWithText($doc, $userNode, 'fax', $user->getFax(), false);
XMLCustomWriter::createChildWithText($doc, $userNode, 'mailing_address', $user->getMailingAddress(), false);
XMLCustomWriter::createChildWithText($doc, $userNode, 'country', $user->getCountry(), false);
if (is_array($user->getAffiliation(null))) {
foreach ($user->getAffiliation(null) as $locale => $value) {
$affiliationNode =& XMLCustomWriter::createChildWithText($doc, $userNode, 'affiliation', $value, false);
if ($affiliationNode) {
XMLCustomWriter::setAttribute($affiliationNode, 'locale', $locale);
}
unset($affiliationNode);
}
}
if (is_array($user->getSignature(null))) {
foreach ($user->getSignature(null) as $locale => $value) {
$signatureNode =& XMLCustomWriter::createChildWithText($doc, $userNode, 'signature', $value, false);
if ($signatureNode) {
XMLCustomWriter::setAttribute($signatureNode, 'locale', $locale);
}
unset($signatureNode);
}
}
$interestsNode =& XMLCustomWriter::createChildWithText($doc, $userNode, 'interests', $user->getInterests(), false);
if ($interestsNode) {
XMLCustomWriter::setAttribute($interestsNode, 'locale', $locale);
}
if (is_array($user->getGossip(null))) {
foreach ($user->getGossip(null) as $locale => $value) {
$gossipNode =& XMLCustomWriter::createChildWithText($doc, $userNode, 'gossip', $value, false);
if ($gossipNode) {
XMLCustomWriter::setAttribute($gossipNode, 'locale', $locale);
}
unset($gossipNode);
}
}
if (is_array($user->getBiography(null))) {
foreach ($user->getBiography(null) as $locale => $value) {
$biographyNode =& XMLCustomWriter::createChildWithText($doc, $userNode, 'biography', $value, false);
if ($biographyNode) {
XMLCustomWriter::setAttribute($biographyNode, 'locale', $locale);
}
unset($biographyNode);
}
}
XMLCustomWriter::createChildWithText($doc, $userNode, 'locales', join(':', $user->getLocales()), false);
$roles =& $roleDao->getRolesByUserId($user->getId(), $journal->getId());
foreach ($roles as $role) {
$rolePath = $role->getRolePath();
if ($allowedRoles !== null && !in_array($rolePath, $allowedRoles)) {
continue;
}
$roleNode =& XMLCustomWriter::createElement($doc, 'role');
XMLCustomWriter::setAttribute($roleNode, 'type', $rolePath);
XMLCustomWriter::appendChild($userNode, $roleNode);
unset($roleNode);
}
XMLCustomWriter::appendChild($root, $userNode);
}
XMLCustomWriter::appendChild($doc, $root);
return $doc;
}
function exportIssues(&$journal, &$issues, $outputFile = null)
{
$this->import('CrossRefExportDom');
$doc =& CrossRefExportDom::generateCrossRefDom();
$doiBatchNode =& CrossRefExportDom::generateDoiBatchDom($doc);
$journal =& Request::getJournal();
// Create Head Node and all parts inside it
$head =& CrossRefExportDom::generateHeadDom($doc, $journal);
// attach it to the root node
XMLCustomWriter::appendChild($doiBatchNode, $head);
$bodyNode =& XMLCustomWriter::createElement($doc, 'body');
XMLCustomWriter::appendChild($doiBatchNode, $bodyNode);
$sectionDao =& DAORegistry::getDAO('SectionDAO');
$publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO');
foreach ($issues as $issue) {
foreach ($sectionDao->getSectionsForIssue($issue->getId()) as $section) {
foreach ($publishedArticleDao->getPublishedArticlesBySectionId($section->getId(), $issue->getId()) as $article) {
// Create the metadata node
// this does not need to be repeated for every article
// but its allowed to be and its simpler to do so
$journalNode =& XMLCustomWriter::createElement($doc, 'journal');
$journalMetadataNode =& CrossRefExportDom::generateJournalMetadataDom($doc, $journal);
XMLCustomWriter::appendChild($journalNode, $journalMetadataNode);
$journalIssueNode =& CrossRefExportDom::generateJournalIssueDom($doc, $journal, $issue, $section, $article);
XMLCustomWriter::appendChild($journalNode, $journalIssueNode);
// Article node
$journalArticleNode =& CrossRefExportDom::generateJournalArticleDom($doc, $journal, $issue, $section, $article);
XMLCustomWriter::appendChild($journalNode, $journalArticleNode);
// DOI data node
$DOIdataNode =& CrossRefExportDom::generateDOIdataDom($doc, $article->getDOI(), Request::url(null, 'article', 'view', $article->getId()));
XMLCustomWriter::appendChild($journalArticleNode, $DOIdataNode);
XMLCustomWriter::appendChild($bodyNode, $journalNode);
}
}
}
// dump out results
if (!empty($outputFile)) {
if (($h = fopen($outputFile, 'w')) === false) {
return false;
}
fwrite($h, XMLCustomWriter::getXML($doc));
fclose($h);
} else {
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"crossref.xml\"");
XMLCustomWriter::printXML($doc);
}
return true;
}
function exportIssues(&$journal, &$issues)
{
$this->import('MetsExportDom');
$doc =& XMLCustomWriter::createDocument('', null);
$root =& XMLCustomWriter::createElement($doc, 'METS:mets');
XMLCustomWriter::setAttribute($root, 'xmlns:METS', 'http://www.loc.gov/METS/');
XMLCustomWriter::setAttribute($root, 'xmlns:xlink', 'http://www.w3.org/TR/xlink');
XMLCustomWriter::setAttribute($root, 'xmlns:xsi', 'http://www.w3.org/2001/XMLSchema-instance');
XMLCustomWriter::setAttribute($root, 'PROFILE', 'Australian METS Profile 1.0');
XMLCustomWriter::setAttribute($root, 'TYPE', 'journal');
XMLCustomWriter::setAttribute($root, 'OBJID', 'J-' . $journal->getJournalId());
XMLCustomWriter::setAttribute($root, 'xsi:schemaLocation', 'http://www.loc.gov/METS/ http://www.loc.gov/mets/mets.xsd');
$HeaderNode =& MetsExportDom::createmetsHdr($doc);
XMLCustomWriter::appendChild($root, $HeaderNode);
MetsExportDom::generateJournalDmdSecDom($doc, $root, $journal);
$fileSec =& XMLCustomWriter::createElement($doc, 'METS:fileSec');
$fileGrpOriginal =& XMLCustomWriter::createElement($doc, 'METS:fileGrp');
XMLCustomWriter::setAttribute($fileGrpOriginal, 'USE', 'original');
$fileGrpDerivative =& XMLCustomWriter::createElement($doc, 'METS:fileGrp');
XMLCustomWriter::setAttribute($fileGrpDerivative, 'USE', 'derivative');
foreach ($issues as $issue) {
MetsExportDom::generateIssueDmdSecDom($doc, $root, $issue, $journal);
MetsExportDom::generateIssueFileSecDom($doc, $fileGrpOriginal, $issue);
MetsExportDom::generateIssueHtmlGalleyFileSecDom($doc, $fileGrpDerivative, $issue);
}
$amdSec =& MetsExportDom::createmetsamdSec($doc, $root, $journal);
XMLCustomWriter::appendChild($root, $amdSec);
XMLCustomWriter::appendChild($fileSec, $fileGrpOriginal);
XMLCustomWriter::appendChild($fileSec, $fileGrpDerivative);
XMLCustomWriter::appendChild($root, $fileSec);
MetsExportDom::generateStructMap($doc, $root, $journal, $issues);
XMLCustomWriter::appendChild($doc, $root);
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"" . $journal->getPath() . "-mets.xml\"");
XMLCustomWriter::printXML($doc);
return true;
}
/**
* Construct the sitemap
* @return XMLNode
*/
function _createJournalSitemap()
{
$issueDao = DAORegistry::getDAO('IssueDAO');
$publishedArticleDao = DAORegistry::getDAO('PublishedArticleDAO');
$galleyDao = DAORegistry::getDAO('ArticleGalleyDAO');
$journal = Request::getJournal();
$journalId = $journal->getId();
$doc = XMLCustomWriter::createDocument();
$root = XMLCustomWriter::createElement($doc, 'urlset');
XMLCustomWriter::setAttribute($root, 'xmlns', SITEMAP_XSD_URL);
// Journal home
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'index', 'index')));
// About page
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'about')));
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'about', 'editorialTeam')));
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'about', 'editorialPolicies')));
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'about', 'submissions')));
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'about', 'siteMap')));
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'about', 'aboutThisPublishingSystem')));
// Search
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'search')));
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'search', 'authors')));
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'search', 'titles')));
// Issues
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'issue', 'current')));
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'issue', 'archive')));
$publishedIssues = $issueDao->getPublishedIssues($journalId);
while ($issue = $publishedIssues->next()) {
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'issue', 'view', $issue->getId())));
// Articles for issue
$articles = $publishedArticleDao->getPublishedArticles($issue->getId());
foreach ($articles as $article) {
// Abstract
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'article', 'view', array($article->getBestArticleId()))));
// Galley files
$galleys = $galleyDao->getBySubmissionId($article->getId());
while ($galley = $galleys->next()) {
XMLCustomWriter::appendChild($root, $this->_createUrlTree($doc, Request::url($journal->getPath(), 'article', 'view', array($article->getBestArticleId(), $galley->getId()))));
}
}
}
XMLCustomWriter::appendChild($doc, $root);
return $doc;
}
/**
* Export a journal's content
* @param $journal object
* @param $outputFile string
*/
function exportJournal(&$journal, $outputFile = null)
{
$this->import('DOAJExportDom');
$doc =& XMLCustomWriter::createDocument();
$journalNode =& DOAJExportDom::generateJournalDom($doc, $journal);
$journalNode->setAttribute('xmlns:xsi', 'http://www.w3.org/2001/XMLSchema-instance');
$journalNode->setAttribute('xsi:noNamespaceSchemaLocation', DOAJ_XSD_URL);
XMLCustomWriter::appendChild($doc, $journalNode);
if (!empty($outputFile)) {
if (($h = fopen($outputFile, 'wb')) === false) {
return false;
}
fwrite($h, XMLCustomWriter::getXML($doc));
fclose($h);
} else {
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"journal-" . $journal->getId() . ".xml\"");
XMLCustomWriter::printXML($doc);
}
return true;
}
/**
* Datacite does not allow empty nodes. So we have to
* check nodes before we add them.
* @param $parentNode XmlNode|DOMElement
* @param $child XmlNode|DOMElement
*/
function _appendNonMandatoryChild(&$parentNode, &$child)
{
if (is_a($child, 'XMLNode')) {
$childChildren = $child->getChildren();
$childEmpty = empty($childChildren);
} else {
$childEmpty = !$child->hasChildNodes();
}
if ($childEmpty) {
return;
}
XMLCustomWriter::appendChild($parentNode, $child);
}
function exportSchedConfs(&$conference, &$schedConfIdArray)
{
$this->import('MetsExportDom');
$schedConfDAO =& DAORegistry::getDAO('SchedConfDAO');
$doc =& XMLCustomWriter::createDocument();
$root =& XMLCustomWriter::createElement($doc, 'METS:mets');
XMLCustomWriter::setAttribute($root, 'xmlns:METS', 'http://www.loc.gov/METS/');
XMLCustomWriter::setAttribute($root, 'xmlns:xlink', 'http://www.w3.org/TR/xlink');
XMLCustomWriter::setAttribute($root, 'xmlns:xsi', 'http://www.w3.org/2001/XMLSchema-instance');
XMLCustomWriter::setAttribute($root, 'PROFILE', 'Australian METS Profile 1.0');
XMLCustomWriter::setAttribute($root, 'TYPE', 'conference');
XMLCustomWriter::setAttribute($root, 'OBJID', 'C-' . $conference->getId());
XMLCustomWriter::setAttribute($root, 'xsi:schemaLocation', 'http://www.loc.gov/METS/ http://www.loc.gov/mets/mets.xsd');
$headerNode =& MetsExportDom::createmetsHdr($doc);
XMLCustomWriter::appendChild($root, $headerNode);
MetsExportDom::generateConfDmdSecDom($doc, $root, $conference);
$fileSec =& XMLCustomWriter::createElement($doc, 'METS:fileSec');
$fileGrp =& XMLCustomWriter::createElement($doc, 'METS:fileGrp');
XMLCustomWriter::setAttribute($fileGrp, 'USE', 'original');
$i = 0;
while ($i < sizeof($schedConfIdArray)) {
$schedConf =& $schedConfDAO->getSchedConf($schedConfIdArray[$i]);
MetsExportDom::generateSchedConfDmdSecDom($doc, $root, $conference, $schedConf);
MetsExportDom::generateSchedConfFileSecDom($doc, $fileGrp, $conference, $schedConf);
$i++;
}
$amdSec =& MetsExportDom::createmetsamdSec($doc, $root, $conference);
XMLCustomWriter::appendChild($root, $amdSec);
XMLCustomWriter::appendChild($fileSec, $fileGrp);
XMLCustomWriter::appendChild($root, $fileSec);
MetsExportDom::generateConfstructMapWithSchedConfsIdArray($doc, $root, $conference, $schedConfIdArray);
XMLCustomWriter::appendChild($doc, $root);
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"" . $conference->getPath() . "-mets.xml\"");
XMLCustomWriter::printXML($doc);
return true;
}
function exportPapers(&$results, $outputFile = null)
{
$this->import('NativeExportDom');
$doc =& XMLCustomWriter::createDocument('papers', NATIVE_DTD_ID, NATIVE_DTD_URL);
$papersNode =& XMLCustomWriter::createElement($doc, 'papers');
XMLCustomWriter::appendChild($doc, $papersNode);
foreach ($results as $result) {
$paper =& $result['publishedPaper'];
$track =& $result['track'];
$conference =& $result['conference'];
$schedConf =& $result['schedConf'];
$paperNode =& NativeExportDom::generatePaperDom($doc, $schedConf, $track, $paper);
XMLCustomWriter::appendChild($papersNode, $paperNode);
}
if (!empty($outputFile)) {
if (($h = fopen($outputFile, 'w')) === false) {
return false;
}
fwrite($h, XMLCustomWriter::getXML($doc));
fclose($h);
} else {
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"papers.xml\"");
XMLCustomWriter::printXML($doc);
}
return true;
}
/**
* Recursively join the document hierarchy into a single document.
* @param $documentHierarchy
* @return array an array of joined nodes
*/
function &_joinNodes(&$documentHierarchy)
{
// Get the root node of the hierarchy.
$root = $documentHierarchy['@branch'];
unset($documentHierarchy['@branch']);
// Add the sub-hierarchies to the root element.
foreach ($documentHierarchy as $subHierarchy) {
// Is this a leaf node?
if (isset($subHierarchy['@leaves'])) {
// Make sure that there's no rubbish in this node.
assert(count($subHierarchy) == 1);
foreach ($subHierarchy['@leaves'] as $leafNode) {
XMLCustomWriter::appendChild($root, $leafNode);
}
} else {
// This is a branch node.
$subNode =& $this->_joinNodes($subHierarchy);
XMLCustomWriter::appendChild($root, $subNode);
}
}
// Return the node list.
return $root;
}
/**
* Add the metadata XML of a single article to an
* XML article list.
*
* @param $articleDoc DOMDocument
* @param $article PublishedArticle
* @param $journal Journal
* @param $markToDelete boolean If true the returned XML
* will only contain a deletion marker.
*/
function _addArticleXml(&$articleDoc, &$article, &$journal, $markToDelete = false)
{
assert(is_a($article, 'Article'));
// Get the root node of the list.
assert(is_a($articleDoc, 'DOMDocument'));
$articleList =& $articleDoc->documentElement;
// Create a new article node.
$articleNode =& XMLCustomWriter::createElement($articleDoc, 'article');
// Add ID information.
XMLCustomWriter::setAttribute($articleNode, 'id', $article->getId());
XMLCustomWriter::setAttribute($articleNode, 'sectionId', $article->getSectionId());
XMLCustomWriter::setAttribute($articleNode, 'journalId', $article->getJournalId());
XMLCustomWriter::setAttribute($articleNode, 'instId', $this->_instId);
// Set the load action.
$loadAction = $markToDelete ? 'delete' : 'replace';
XMLCustomWriter::setAttribute($articleNode, 'loadAction', $loadAction);
XMLCustomWriter::appendChild($articleList, $articleNode);
// The XML for an article marked to be deleted contains no metadata.
if ($markToDelete) {
return;
}
assert(is_a($article, 'PublishedArticle'));
// Add authors.
$authors = $article->getAuthors();
if (!empty($authors)) {
$authorList =& XMLCustomWriter::createElement($articleDoc, 'authorList');
foreach ($authors as $author) {
/* @var $author Author */
XMLCustomWriter::createChildWithText($articleDoc, $authorList, 'author', $author->getFullName(true));
}
XMLCustomWriter::appendChild($articleNode, $authorList);
}
// We need the request to retrieve locales and build URLs.
$request = PKPApplication::getRequest();
// Get all supported locales.
$site = $request->getSite();
$supportedLocales = $site->getSupportedLocales() + array_keys($journal->getSupportedLocaleNames());
assert(!empty($supportedLocales));
// Add titles.
$titleList =& XMLCustomWriter::createElement($articleDoc, 'titleList');
// Titles are used for sorting, we therefore need
// them in all supported locales.
assert(!empty($supportedLocales));
foreach ($supportedLocales as $locale) {
$localizedTitle = $article->getLocalizedTitle($locale);
if (!is_null($localizedTitle)) {
// Add the localized title.
$titleNode =& XMLCustomWriter::createChildWithText($articleDoc, $titleList, 'title', $localizedTitle);
XMLCustomWriter::setAttribute($titleNode, 'locale', $locale);
// If the title does not exist in the given locale
// then use the localized title for sorting only.
$title = $article->getTitle($locale);
$sortOnly = empty($title) ? 'true' : 'false';
XMLCustomWriter::setAttribute($titleNode, 'sortOnly', $sortOnly);
}
}
XMLCustomWriter::appendChild($articleNode, $titleList);
// Add abstracts.
$abstracts = $article->getAbstract(null);
// return all locales
if (!empty($abstracts)) {
$abstractList =& XMLCustomWriter::createElement($articleDoc, 'abstractList');
foreach ($abstracts as $locale => $abstract) {
$abstractNode =& XMLCustomWriter::createChildWithText($articleDoc, $abstractList, 'abstract', $abstract);
XMLCustomWriter::setAttribute($abstractNode, 'locale', $locale);
}
XMLCustomWriter::appendChild($articleNode, $abstractList);
}
// Add discipline.
$disciplines = $article->getDiscipline(null);
// return all locales
if (!empty($disciplines)) {
$disciplineList =& XMLCustomWriter::createElement($articleDoc, 'disciplineList');
foreach ($disciplines as $locale => $discipline) {
$disciplineNode =& XMLCustomWriter::createChildWithText($articleDoc, $disciplineList, 'discipline', $discipline);
XMLCustomWriter::setAttribute($disciplineNode, 'locale', $locale);
}
XMLCustomWriter::appendChild($articleNode, $disciplineList);
}
// Add subjects and subject classes.
$subjectClasses = $article->getSubjectClass(null);
$subjects = $article->getSubject(null);
if (!empty($subjectClasses) || !empty($subjects)) {
$subjectList =& XMLCustomWriter::createElement($articleDoc, 'subjectList');
if (!is_array($subjectClasses)) {
$subjectClasses = array();
}
if (!is_array($subjects)) {
$subjects = array();
}
$locales = array_unique(array_merge(array_keys($subjectClasses), array_keys($subjects)));
foreach ($locales as $locale) {
$subject = '';
if (isset($subjectClasses[$locale])) {
$subject .= $subjectClasses[$locale];
}
if (isset($subjects[$locale])) {
if (!empty($subject)) {
$subject .= ' ';
}
$subject .= $subjects[$locale];
}
$subjectNode =& XMLCustomWriter::createChildWithText($articleDoc, $subjectList, 'subject', $subject);
XMLCustomWriter::setAttribute($subjectNode, 'locale', $locale);
}
XMLCustomWriter::appendChild($articleNode, $subjectList);
}
// Add type.
$types = $article->getType(null);
// return all locales
if (!empty($types)) {
$typeList =& XMLCustomWriter::createElement($articleDoc, 'typeList');
foreach ($types as $locale => $type) {
$typeNode =& XMLCustomWriter::createChildWithText($articleDoc, $typeList, 'type', $type);
XMLCustomWriter::setAttribute($typeNode, 'locale', $locale);
}
XMLCustomWriter::appendChild($articleNode, $typeList);
}
// Add coverage.
$coverageGeo = $article->getCoverageGeo(null);
$coverageChron = $article->getCoverageChron(null);
$coverageSample = $article->getCoverageSample(null);
if (!empty($coverageGeo) || !empty($coverageChron) || !empty($coverageSample)) {
$coverageList =& XMLCustomWriter::createElement($articleDoc, 'coverageList');
if (!is_array($coverageGeo)) {
$coverageGeo = array();
}
if (!is_array($coverageChron)) {
$coverageChron = array();
}
if (!is_array($coverageSample)) {
$coverageSample = array();
}
$locales = array_unique(array_merge(array_keys($coverageGeo), array_keys($coverageChron), array_keys($coverageSample)));
foreach ($locales as $locale) {
$coverage = '';
if (isset($coverageGeo[$locale])) {
$coverage .= $coverageGeo[$locale];
}
if (isset($coverageChron[$locale])) {
if (!empty($coverage)) {
$coverage .= '; ';
}
$coverage .= $coverageChron[$locale];
}
if (isset($coverageSample[$locale])) {
if (!empty($coverage)) {
$coverage .= '; ';
}
$coverage .= $coverageSample[$locale];
}
$coverageNode =& XMLCustomWriter::createChildWithText($articleDoc, $coverageList, 'coverage', $coverage);
XMLCustomWriter::setAttribute($coverageNode, 'locale', $locale);
}
XMLCustomWriter::appendChild($articleNode, $coverageList);
}
// Add journal titles.
$journalTitleList =& XMLCustomWriter::createElement($articleDoc, 'journalTitleList');
// Journal titles are used for sorting, we therefore need
// them in all supported locales.
foreach ($supportedLocales as $locale) {
$localizedTitle = $journal->getName($locale);
$sortOnly = false;
if (is_null($localizedTitle)) {
// If the title does not exist in the given locale
// then use the localized title for sorting only.
$journalTitle = $journal->getLocalizedName();
$sortOnly = true;
} else {
$journalTitle = $localizedTitle;
}
$journalTitleNode =& XMLCustomWriter::createChildWithText($articleDoc, $journalTitleList, 'journalTitle', $journalTitle);
XMLCustomWriter::setAttribute($journalTitleNode, 'locale', $locale);
$sortOnly = $sortOnly ? 'true' : 'false';
XMLCustomWriter::setAttribute($journalTitleNode, 'sortOnly', $sortOnly);
}
XMLCustomWriter::appendChild($articleNode, $journalTitleList);
// Add publication dates.
$publicationDate = $article->getDatePublished();
if (!empty($publicationDate)) {
// Transform and store article publication date.
$publicationDate = $this->_convertDate($publicationDate);
$dateNode =& XMLCustomWriter::createChildWithText($articleDoc, $articleNode, 'publicationDate', $publicationDate);
}
$issueId = $article->getIssueId();
if (is_numeric($issueId)) {
$issueDao = DAORegistry::getDAO('IssueDAO');
/* @var $issueDao IssueDAO */
$issue = $issueDao->getById($issueId);
if (is_a($issue, 'Issue')) {
$issuePublicationDate = $issue->getDatePublished();
if (!empty($issuePublicationDate)) {
// Transform and store issue publication date.
$issuePublicationDate = $this->_convertDate($issuePublicationDate);
$dateNode =& XMLCustomWriter::createChildWithText($articleDoc, $articleNode, 'issuePublicationDate', $issuePublicationDate);
}
}
}
// We need the router to build file URLs.
$router = $request->getRouter();
/* @var $router PageRouter */
// Add galley files
$articleGalleyDao = DAORegistry::getDAO('ArticleGalleyDAO');
$galleys = $articleGalleyDao->getBySubmissionId($article->getId());
$galleyList = null;
while ($galley = $galleys->next()) {
/* @var $galley ArticleGalley */
$locale = $galley->getLocale();
$galleyUrl = $router->url($request, $journal->getPath(), 'article', 'download', array(intval($article->getId()), intval($galley->getId())));
if (!empty($locale) && !empty($galleyUrl)) {
if (is_null($galleyList)) {
$galleyList =& XMLCustomWriter::createElement($articleDoc, 'galleyList');
}
$galleyNode =& XMLCustomWriter::createElement($articleDoc, 'galley');
XMLCustomWriter::setAttribute($galleyNode, 'locale', $locale);
XMLCustomWriter::setAttribute($galleyNode, 'fileName', $galleyUrl);
XMLCustomWriter::appendChild($galleyList, $galleyNode);
}
}
// Wrap the galley XML as CDATA.
if (!is_null($galleyList)) {
if (is_callable(array($articleDoc, 'saveXml'))) {
$galleyXml = $articleDoc->saveXml($galleyList);
} else {
$galleyXml = $galleyList->toXml();
}
$galleyOuterNode =& XMLCustomWriter::createElement($articleDoc, 'galley-xml');
if (is_callable(array($articleDoc, 'createCDATASection'))) {
$cdataNode = $articleDoc->createCDATASection($galleyXml);
} else {
$cdataNode = new XMLNode();
$cdataNode->setValue('<![CDATA[' . $galleyXml . ']]>');
}
XMLCustomWriter::appendChild($galleyOuterNode, $cdataNode);
XMLCustomWriter::appendChild($articleNode, $galleyOuterNode);
}
}
function &generateArticleDom(&$doc, &$journal, &$issue, &$article, &$galley)
{
$unavailableString = Locale::translate('plugins.importexport.erudit.unavailable');
$root =& XMLCustomWriter::createElement($doc, 'article');
XMLCustomWriter::setAttribute($root, 'idprop', $journal->getJournalId() . '-' . $issue->getIssueId() . '-' . $article->getArticleId() . '-' . $galley->getGalleyId(), false);
XMLCustomWriter::setAttribute($root, 'arttype', 'article');
$lang = $article->getLanguage();
XMLCustomWriter::setAttribute($root, 'lang', isset($lang) ? $lang : 'en');
XMLCustomWriter::setAttribute($root, 'processing', 'cart');
/* --- admin --- */
$adminNode =& XMLCustomWriter::createElement($doc, 'admin');
XMLCustomWriter::appendChild($root, $adminNode);
/* --- articleinfo --- */
$articleInfoNode =& XMLCustomWriter::createElement($doc, 'articleinfo');
XMLCustomWriter::appendChild($adminNode, $articleInfoNode);
// The first public ID should be a full URL to the article.
$urlIdNode =& XMLCustomWriter::createChildWithText($doc, $articleInfoNode, 'idpublic', Request::url($journal->getPath(), 'article', 'view', array($article->getArticleId(), $galley->getGalleyId())));
XMLCustomWriter::setAttribute($urlIdNode, 'scheme', 'sici');
/* --- journal --- */
$journalNode =& XMLCustomWriter::createElement($doc, 'journal');
XMLCustomWriter::appendChild($adminNode, $journalNode);
XMLCustomWriter::setAttribute($journalNode, 'id', 'ojs-' . $journal->getPath());
XMLCustomWriter::createChildWithText($doc, $journalNode, 'jtitle', $journal->getJournalTitle());
XMLCustomWriter::createChildWithText($doc, $journalNode, 'jshorttitle', $journal->getLocalizedSetting('initials'), false);
if (!($printIssn = $journal->getSetting('printIssn'))) {
$printIssn = $unavailableString;
}
XMLCustomWriter::createChildWithText($doc, $journalNode, 'idissn', $printIssn);
if (!($onlineIssn = $journal->getSetting('onlineIssn'))) {
$onlineIssn = $unavailableString;
}
XMLCustomWriter::createChildWithText($doc, $journalNode, 'iddigissn', $onlineIssn);
/* --- issue --- */
$issueNode =& XMLCustomWriter::createElement($doc, 'issue');
XMLCustomWriter::appendChild($adminNode, $issueNode);
XMLCustomWriter::setAttribute($issueNode, 'id', 'ojs-' . $issue->getBestIssueId());
XMLCustomWriter::createChildWithText($doc, $issueNode, 'volume', $issue->getVolume(), false);
XMLCustomWriter::createChildWithText($doc, $issueNode, 'issueno', $issue->getNumber(), false);
$pubNode =& XMLCustomWriter::createElement($doc, 'pub');
XMLCustomWriter::appendChild($issueNode, $pubNode);
XMLCustomWriter::createChildWithText($doc, $pubNode, 'year', $issue->getYear());
$digPubNode =& XMLCustomWriter::createElement($doc, 'digpub');
XMLCustomWriter::appendChild($issueNode, $digPubNode);
XMLCustomWriter::createChildWithText($doc, $digPubNode, 'date', EruditExportDom::formatDate($issue->getDatePublished()));
/* --- Publisher & DTD --- */
$publisherInstitution =& $journal->getSetting('publisherInstitution');
$publisherNode =& XMLCustomWriter::createElement($doc, 'publisher');
XMLCustomWriter::setAttribute($publisherNode, 'id', 'ojs-' . $journal->getJournalId() . '-' . $issue->getIssueId() . '-' . $article->getArticleId());
XMLCustomWriter::appendChild($adminNode, $publisherNode);
$publisherInstitution = $unavailableString;
if (empty($publisherInstitution)) {
$publisherInstitution = $unavailableString;
}
XMLCustomWriter::createChildWithText($doc, $publisherNode, 'orgname', $publisherInstitution);
$digprodNode =& XMLCustomWriter::createElement($doc, 'digprod');
XMLCustomWriter::createChildWithText($doc, $digprodNode, 'orgname', $publisherInstitution);
XMLCustomWriter::setAttribute($digprodNode, 'id', 'ojs-prod-' . $journal->getJournalId() . '-' . $issue->getIssueId() . '-' . $article->getArticleId());
XMLCustomWriter::appendChild($adminNode, $digprodNode);
$digdistNode =& XMLCustomWriter::createElement($doc, 'digdist');
XMLCustomWriter::createChildWithText($doc, $digdistNode, 'orgname', $publisherInstitution);
XMLCustomWriter::setAttribute($digdistNode, 'id', 'ojs-dist-' . $journal->getJournalId() . '-' . $issue->getIssueId() . '-' . $article->getArticleId());
XMLCustomWriter::appendChild($adminNode, $digdistNode);
$dtdNode =& XMLCustomWriter::createElement($doc, 'dtd');
XMLCustomWriter::appendChild($adminNode, $dtdNode);
XMLCustomWriter::setAttribute($dtdNode, 'name', 'Erudit Article');
XMLCustomWriter::setAttribute($dtdNode, 'version', '3.0.0');
/* --- copyright --- */
$copyright = $journal->getLocalizedSetting('copyrightNotice');
XMLCustomWriter::createChildWithText($doc, $adminNode, 'copyright', empty($copyright) ? $unavailableString : $copyright);
/* --- frontmatter --- */
$frontMatterNode =& XMLCustomWriter::createElement($doc, 'frontmatter');
XMLCustomWriter::appendChild($root, $frontMatterNode);
$titleGroupNode =& XMLCustomWriter::createElement($doc, 'titlegr');
XMLCustomWriter::appendChild($frontMatterNode, $titleGroupNode);
XMLCustomWriter::createChildWithText($doc, $titleGroupNode, 'title', strip_tags($article->getArticleTitle()));
/* --- authorgr --- */
$authorGroupNode =& XMLCustomWriter::createElement($doc, 'authorgr');
XMLCustomWriter::appendChild($frontMatterNode, $authorGroupNode);
$authorNum = 1;
foreach ($article->getAuthors() as $author) {
$authorNode =& XMLCustomWriter::createElement($doc, 'author');
XMLCustomWriter::appendChild($authorGroupNode, $authorNode);
XMLCustomWriter::setAttribute($authorNode, 'id', 'ojs-' . $journal->getJournalId() . '-' . $issue->getIssueId() . '-' . $article->getArticleId() . '-' . $galley->getGalleyId() . '-' . $authorNum);
$persNameNode =& XMLCustomWriter::createElement($doc, 'persname');
XMLCustomWriter::appendChild($authorNode, $persNameNode);
// Opatan Inc.
foreach ((array) $author->getFirstName(null) as $locale => $firstName) {
$firstName = strip_tags($firstName);
$firstNameNode =& XMLCustomWriter::createElement($doc, 'firstname');
XMLCustomWriter::setAttribute($firstNameNode, 'lang', $locale);
XMLCustomWriter::appendChild($persNameNode, $firstNameNode);
XMLCustomWriter::createChildWithText($doc, $firstNameNode, 'blocktext', $firstName);
unset($firstNameNode);
}
// Opatan Inc.
foreach ((array) $author->getMiddleName(null) as $locale => $middleName) {
$middleName = strip_tags($middleName);
$middleNameNode =& XMLCustomWriter::createElement($doc, 'middlename');
XMLCustomWriter::setAttribute($middleNameNode, 'lang', $locale);
XMLCustomWriter::appendChild($persNameNode, $middleNameNode);
XMLCustomWriter::createChildWithText($doc, $middleNameNode, 'blocktext', $middleName);
unset($middleNameNode);
}
// Opatan Inc.
foreach ((array) $author->getLastName(null) as $locale => $lastName) {
$lastName = strip_tags($lastName);
$lastNameNode =& XMLCustomWriter::createElement($doc, 'familyname');
XMLCustomWriter::setAttribute($lastNameNode, 'lang', $locale);
XMLCustomWriter::appendChild($persNameNode, $lastNameNode);
XMLCustomWriter::createChildWithText($doc, $lastNameNode, 'blocktext', $lastName);
unset($lastNameNode);
}
// Opatan Inc.
foreach ((array) $author->getAffiliation(null) as $locale => $affiliation) {
$affiliation = strip_tags($affiliation);
$affiliationNode =& XMLCustomWriter::createElement($doc, 'affiliation');
XMLCustomWriter::setAttribute($affiliationNode, 'lang', $locale);
XMLCustomWriter::appendChild($authorNode, $affiliationNode);
XMLCustomWriter::createChildWithText($doc, $affiliationNode, 'blocktext', $affiliation, false);
}
$authorNum++;
}
/* --- abstract and keywords --- */
foreach ((array) $article->getAbstract(null) as $locale => $abstract) {
$abstract = strip_tags($abstract);
$abstractNode =& XMLCustomWriter::createElement($doc, 'abstract');
XMLCustomWriter::setAttribute($abstractNode, 'lang', $locale);
XMLCustomWriter::appendChild($frontMatterNode, $abstractNode);
XMLCustomWriter::createChildWithText($doc, $abstractNode, 'blocktext', $abstract);
unset($abstractNode);
}
if ($keywords = $article->getArticleSubject()) {
$keywordGroupNode =& XMLCustomWriter::createElement($doc, 'keywordgr');
XMLCustomWriter::setAttribute($keywordGroupNode, 'lang', ($language = $article->getLanguage()) ? $language : 'en');
foreach (explode(';', $keywords) as $keyword) {
XMLCustomWriter::createChildWithText($doc, $keywordGroupNode, 'keyword', trim($keyword), false);
}
XMLCustomWriter::appendChild($frontMatterNode, $keywordGroupNode);
}
/* --- body --- */
$bodyNode =& XMLCustomWriter::createElement($doc, 'body');
XMLCustomWriter::appendChild($root, $bodyNode);
import('file.ArticleFileManager');
$articleFileManager =& new ArticleFileManager($article->getArticleId());
$file =& $articleFileManager->getFile($galley->getFileId());
$parser =& SearchFileParser::fromFile($file);
if (isset($parser)) {
if ($parser->open()) {
// File supports text indexing.
$textNode =& XMLCustomWriter::createElement($doc, 'text');
XMLCustomWriter::appendChild($bodyNode, $textNode);
while (($line = $parser->read()) !== false) {
$line = trim($line);
if ($line != '') {
XMLCustomWriter::createChildWithText($doc, $textNode, 'blocktext', $line, false);
}
}
$parser->close();
}
}
return $root;
}
/**
* Export the selected email templates as XML
* @param $args array
* @@param $request PKPRequest
*/
function exportEmails($args, $request)
{
$this->validate();
import('lib.pkp.classes.xml.XMLCustomWriter');
$selectedEmailKeys = (array) $request->getUserVar('tplId');
if (empty($selectedEmailKeys)) {
$request->redirect(null, null, 'emails');
}
$journal = Request::getJournal();
$doc = XMLCustomWriter::createDocument();
$emailTexts = XMLCustomWriter::createElement($doc, 'email_texts');
$emailTexts->setAttribute('locale', AppLocale::getLocale());
$emailTexts->setAttribute('xmlns:xsi', 'http://www.w3.org/2001/XMLSchema-instance');
$emailTemplateDao = DAORegistry::getDAO('EmailTemplateDAO');
$emailTemplates = $emailTemplateDao->getEmailTemplates(AppLocale::getLocale(), $journal->getId());
foreach ($emailTemplates as $emailTemplate) {
$emailKey = $emailTemplate->getData('emailKey');
if (!in_array($emailKey, $selectedEmailKeys)) {
continue;
}
$subject = $emailTemplate->getData('subject');
$body = $emailTemplate->getData('body');
$emailTextNode = XMLCustomWriter::createElement($doc, 'email_text');
XMLCustomWriter::setAttribute($emailTextNode, 'key', $emailKey);
//append subject node
$subjectNode = XMLCustomWriter::createChildWithText($doc, $emailTextNode, 'subject', $subject, false);
XMLCustomWriter::appendChild($emailTextNode, $subjectNode);
//append body node
$bodyNode = XMLCustomWriter::createChildWithText($doc, $emailTextNode, 'body', $body, false);
XMLCustomWriter::appendChild($emailTextNode, $bodyNode);
//append email_text node
XMLCustomWriter::appendChild($emailTexts, $emailTextNode);
}
XMLCustomWriter::appendChild($doc, $emailTexts);
header("Content-Type: application/xml");
header("Cache-Control: private");
header("Content-Disposition: attachment; filename=\"email-templates-" . date('Y-m-d-H-i-s') . ".xml\"");
XMLCustomWriter::printXML($doc);
}