function get_records_to_print($lab_config, $patient_id)
{
global $date_from, $date_to;
$retval = array();
if (isset($_REQUEST['ip']) && $_REQUEST['ip'] == 0) {
# Do not include pending tests
$query_string = "SELECT t.* FROM test t, specimen sp " . "WHERE t.result <> '' " . "AND t.specimen_id=sp.specimen_id " . "AND sp.patient_id={$patient_id} ";
if (isset($_REQUEST['yf'])) {
$query_string .= "AND (sp.date_collected BETWEEN '{$date_from}' AND '{$date_to}') ";
}
$query_string .= "ORDER BY sp.date_collected DESC";
} else {
# Include pending tests
$query_string = "SELECT t.* FROM test t, specimen sp " . "WHERE t.specimen_id=sp.specimen_id " . "AND sp.patient_id={$patient_id} ";
if (isset($_REQUEST['yf'])) {
$query_string .= "AND (sp.date_collected BETWEEN '{$date_from}' AND '{$date_to}') ";
}
$query_string .= "ORDER BY sp.date_collected DESC";
}
$resultset = query_associative_all($query_string, $row_count);
if (count($resultset) == 0 || $resultset == null) {
return $retval;
}
foreach ($resultset as $record) {
$test = Test::getObject($record);
$hide_patient_name = TestType::toHidePatientName($test->testTypeId);
if ($hide_patient_name == 1) {
$hidePatientName = 1;
}
$specimen = get_specimen_by_id($test->specimenId);
$retval[] = array($test, $specimen, $hide_patient_name);
}
return $retval;
}
/**
* @see http://lists.shadanakar.org/onphp-dev-ru/0811/0774.html
**/
public function testRecursiveContainers()
{
$this->markTestSkipped('wontfix');
foreach (DBTestPool::me()->getPool() as $db) {
DBPool::me()->setDefault($db);
TestObject::dao()->import(TestObject::create()->setId(1)->setName('test object'));
TestType::dao()->import(TestType::create()->setId(1)->setName('test type'));
$type = TestType::dao()->getById(1);
$type->getObjects()->fetch()->setList(array(TestObject::dao()->getById(1)))->save();
$object = TestObject::dao()->getById(1);
TestObject::dao()->save($object->setName('test object modified'));
$list = $type->getObjects()->getList();
$modifiedObject = TestObject::dao()->getById(1);
$this->assertEquals($list[0], $modifiedObject);
}
}
function get_records_to_print($lab_config, $patient_id, $specimen_id)
{
$retval = array();
$query_string = "SELECT * FROM test,specimen " . "WHERE specimen.specimen_id={$specimen_id} and test.specimen_id=specimen.specimen_id and specimen.patient_id={$patient_id}";
$resultset = query_associative_one($query_string);
if ($resultset == null) {
echo "hiral";
}
$test = Test::getObject($resultset);
$hide_patient_name = TestType::toHidePatientName($test->testTypeId);
if ($hide_patient_name == 1) {
$hidePatientName = 1;
}
$specimen = get_specimen_by_id($test->specimenId);
$retval[] = array($test, $specimen, $hide_patient_name);
return $retval;
}
function generate_worksheet_config($lab_config_id)
{
$lab_config = LabConfig::getById($lab_config_id);
$test_ids = $lab_config->getTestTypeIds();
$saved_db = DbUtil::switchToLabConfig($lab_config_id);
foreach ($test_ids as $test_id) {
$test_entry = TestType::getById($test_id);
$query_string = "SELECT * FROM report_config WHERE test_type_id={$test_id} LIMIT 1";
$record = query_associative_one($query_string);
if ($record == null) {
# Add new entry
$query_string_add = "INSERT INTO report_config (" . "test_type_id, header, footer, margins, " . "p_fields, s_fields, t_fields, p_custom_fields, s_custom_fields " . ") VALUES (" . "'{$test_id}', 'Worksheet - " . $test_entry->name . "', '', '5,0,5,0', " . "'0,1,0,1,1,0,0', '0,0,1,1,0,0', '1,0,1,0,0,0,0,1', '', '' " . ")";
query_insert_one($query_string_add);
}
}
DbUtil::switchRestore($saved_db);
}
/**
* Set compatible specimen types
*
* @return void
*/
public function setTestTypes($testTypes)
{
$testTypesAdded = array();
if (is_array($testTypes)) {
foreach ($testTypes as $name) {
try {
$testTypesAdded[] = TestType::where('name', '=', $name)->first()->id;
} catch (\Exception $e) {
Log::error($e);
}
}
}
if (count($testTypesAdded) > 0) {
// Delete existing instrument test_type mappings
$this->testTypes()->detach();
// Add the new mapping
$this->testTypes()->attach($testTypesAdded);
}
}
public function decodeResultWithoutMeasures($show_range = false)
{
# Converts stored result value(s) for showing on front-end
$test_type = TestType::getById($this->testTypeId);
$measure_list = $test_type->getMeasures();
$result_csv = $this->getResultWithoutHash();
$result_list = explode(",", $result_csv);
$retval = "";
for ($i = 0; $i < count($measure_list); $i++) {
# Pretty print
$curr_measure = $measure_list[$i];
if (isset($result_list[$i])) {
# If matching result value exists (e.g. after a new measure was added to this test type)
if (count($measure_list) == 1) {
# Only one measure: Do not print measure name
//$retval .= $curr_measure->name." ";
if ($curr_measure->getRangeType() == Measure::$RANGE_AUTOCOMPLETE) {
$result_string = "";
$value_list = explode("_", $result_list[$i]);
foreach ($value_list as $value) {
if (trim($value) == "") {
continue;
}
$result_string .= $value . "<br>";
}
$result_string = substr($result_string, 0, -4);
$retval .= "<br>" . $result_string . " ";
} else {
if ($curr_measure->getRangeType() == Measure::$RANGE_OPTIONS) {
if ($result_list[$i] != $curr_measure->unit) {
$retval .= "<br><b>" . $result_list[$i] . "</b> ";
} else {
$retval .= "<br>" . $result_list[$i] . " ";
}
} else {
$retval .= "<br>" . $result_list[$i] . " ";
}
}
} else {
# Print measure name with each result value
// $retval .= $curr_measure->name." ";
if ($curr_measure->getRangeType() == Measure::$RANGE_AUTOCOMPLETE) {
$result_string = "";
$value_list = str_replace("_", ",", $result_list[$i]);
//$retval .= ":<br>".$value_list."<br>";
$retval .= "<br>" . $value_list . "<br>";
} else {
if ($curr_measure->getRangeType() == Measure::$RANGE_OPTIONS) {
if ($result_list[$i] != $curr_measure->unit) {
//$retval .= "<b>".$result_list[$i]."</b> ";
$retval .= "<br><b>" . $result_list[$i] . "</b> <br>";
} else {
//$retval .= $result_list[$i]." ";
$retval .= "<br>" . $result_list[$i] . " <br>";
}
} else {
//$retval .= $result_list[$i]." ";
$retval .= "<br>" . $result_list[$i] . " <br>";
}
}
}
if ($show_range === true) {
$retval .= $curr_measure->getRangeString();
}
if ($i != count($measure_list) - 1) {
//$retval .= "<br>";
}
} else {
# Matching result value not found: Show "-"
if (count($measure_list) == 1) {
$retval .= $curr_measure->name . " ";
}
$retval .= " - <br>";
}
}
$retval = str_replace("_", ",", $retval);
# Replace all underscores with a comma
return $retval;
}
public function decodeResultWithoutMeasures($show_range = false)
{
# Converts stored result value(s) for showing on front-end
# Get measure, unit pairs for this test
$test_type = TestType::getById($this->testTypeId);
$measure_list = $test_type->getMeasures();
//print_r($measure_list);
$submeasure_list = array();
$comb_measure_list = array();
// print_r($measure_list);
foreach ($measure_list as $measure) {
$submeasure_list = $measure->getSubmeasuresAsObj();
//echo "<br>".count($submeasure_list);
//print_r($submeasure_list);
$submeasure_count = count($submeasure_list);
if ($measure->checkIfSubmeasure() == 1) {
continue;
}
if ($submeasure_count == 0) {
array_push($comb_measure_list, $measure);
} else {
array_push($comb_measure_list, $measure);
foreach ($submeasure_list as $submeasure) {
array_push($comb_measure_list, $submeasure);
}
}
}
$measure_list = $comb_measure_list;
$result_csv = $this->getResultWithoutHash();
//$result_csv = $this->getResultWithoutHash();
//echo "<br>";
//echo $result_csv;
//echo "<br>";
if (strpos($result_csv, "[\$]") === false) {
$result_list = explode(",", $result_csv);
} else {
//$testt = "one,[$]two[/$],[$]twotwo[/$],three";
$testt = $result_csv;
//$test2 = strstr($testt, $);
$start_tag = "[\$]";
$end_tag = "[/\$]";
//$testtt = str_replace("[$]two[/$],", "", $testt);
$freetext_results = array();
$ft_count = substr_count($testt, $start_tag);
//echo $ft_count;
$k = 0;
while ($k < $ft_count) {
$ft_beg = strpos($testt, $start_tag);
$ft_end = strpos($testt, $end_tag);
$ft_sub = substr($testt, $ft_beg + 3, $ft_end - $ft_beg - 3);
$ft_left = substr($testt, 0, $ft_beg);
$ft_right = substr($testt, $ft_end + 5);
//echo "<br>".$ft_left."--".$ft_right."<br>";
$testt = $ft_left . $ft_right;
array_push($freetext_results, $ft_sub);
$k++;
}
//echo $freetext_results."<br>".$testt;
//$testtt = str_replace($subb, "", $testt, 1);
//echo "$testto<br>$subb<br>";
$result_csv = $testt;
if (strpos($testt, ",") == 0) {
$result_csv = substr($testt, 1, strlen($testt));
}
$result_list = explode(",", $result_csv);
//echo "<br>";
//print_r($result_list);
//echo "<br>";
}
$retval = "";
//NC3065
//echo print_r($measure_list);
//echo "<br>";
//echo $result_csv;
//echo "<br>";
//echo print_r($result_list,true);
//echo "Num->".count($measure_list);
//-NC3065
$j = 0;
$i = 0;
$c = 0;
//for($i = 0; $i < count($measure_list); $i++) {
while ($c < count($measure_list)) {
# Pretty print
$curr_measure = $measure_list[$c];
if ($curr_measure->getRangeType() != Measure::$RANGE_FREETEXT) {
if (isset($result_list[$i])) {
//echo "Num->".$i;
# If matching result value exists (e.g. after a new measure was added to this test type)
if (count($measure_list) == 1) {
# Only one measure: Do not print measure name
if ($curr_measure->getRangeType() == Measure::$RANGE_AUTOCOMPLETE) {
$result_string = "";
$value_list = explode("_", $result_list[$i]);
foreach ($value_list as $value) {
if (trim($value) == "") {
continue;
}
$result_string .= $value . "<br>";
}
$result_string = substr($result_string, 0, -4);
$retval .= "<br>" . $result_string . " ";
} else {
if ($curr_measure->getRangeType() == Measure::$RANGE_OPTIONS) {
if ($result_list[$i] != $curr_measure->unit) {
$retval .= "<br><b>" . $result_list[$i] . "</b> ";
} else {
$retval .= "<br>" . $result_list[$i] . " ";
}
} else {
$retval .= "<br>" . $result_list[$i] . " ";
}
}
} else {
# Print measure name with each result value
if ($curr_measure->getRangeType() == Measure::$RANGE_AUTOCOMPLETE) {
$result_string = "";
$value_list = str_replace("_", ",", $result_list[$i]);
$retval .= "<br><b>" . $value_list . "</b>";
} else {
if ($curr_measure->getRangeType() == Measure::$RANGE_OPTIONS) {
if ($result_list[$i] != $curr_measure->unit) {
$retval .= "<br><b>" . $result_list[$i] . "</b>" . " ";
} else {
$retval .= $result_list[$i] . " ";
}
} else {
$retval .= "<br><b>" . $result_list[$i] . "</b>" . " ";
}
}
}
if ($show_range === true) {
$retval .= $curr_measure->getRangeString();
}
if ($i != count($measure_list) - 1) {
$retval .= "<br>";
}
} else {
# Matching result value not found: Show "-"
if (count($measure_list) == 1) {
}
$retval .= " - <br>";
}
$i++;
} else {
$ft_result = $freetext_results[$j];
if (count($measure_list) == 1) {
$retval .= "<br>" . $ft_result . " ";
} else {
$retval .= "<br>" . $ft_result . " ";
}
if ($show_range === true) {
$retval .= $curr_measure->getRangeString();
}
if ($i != count($measure_list) - 1) {
$retval .= "<br>";
}
$j++;
}
$c++;
}
//end
//$retval = str_replace("_",",",$retval); # Replace all underscores with a comma
return $retval;
}
<?php
#
# Deletes a test type from DB
# Sets disabled flag to true instead of deleting the record
# This maintains info for samples that were linked to this test type previously
#
include "../includes/db_lib.php";
$saved_session = SessionUtil::save();
$saved_db = DbUtil::switchToGlobal();
$test_type_id = $_REQUEST['id'];
TestType::deleteById($test_type_id);
DbUtil::switchRestore($saved_db);
SessionUtil::restore($saved_session);
header("Location: catalog.php?tdel");
}
# For each measure:
foreach ($measure_list as $measure) {
$measure_id = $measure->measureId;
# Remove entries from test_type_measure
$query_string = "DELETE FROM test_type_measure WHERE measure_id={$measure_id}";
query_delete($query_string);
# Remove entry from measure
$query_string = "DELETE FROM measure WHERE measure_id={$measure_id}";
query_delete($query_string);
}
$query_string = "SELECT * FROM specimen_type";
$resultset = query_associative_all($query_string, $row_count);
$specimen_list = array();
foreach ($resultset as $record) {
$specimen_list[] = TestType::getObject($record);
}
# For each specimen type:
foreach ($specimen_list as $specimen) {
$specimen_type_id = $specimen->specimenTypeId;
# Remove entries from lab_config_specimen_type
$query_string = "DELETE FROM lab_config_specimen_type WHERE specimen_type_id={$specimen_type_id}";
query_delete($query_string);
# Remove entries from specimen_test
$query_string = "DELETE FROM specimen_test WHERE specimen_type_id={$specimen_type_id}";
query_delete($query_string);
# Remove entry from specimen_type
$query_string = "DELETE FROM specimen_type WHERE specimen_type_id={$specimen_type_id}";
query_delete($query_string);
}
DbUtil::switchRestore($saved_db);
<?php
#
# Adds result for a single test
# Called via ajax from results_entry.php
#
include "../includes/db_lib.php";
include "../includes/user_lib.php";
LangUtil::setPageId("results_entry");
$test_id = $_REQUEST['test_id'];
$test_name = get_test_name_by_id($test_id);
$test = Test::getById($test_id);
$test_type = TestType::getById($test->testTypeId);
$specimen_id = $_REQUEST['specimen_id'];
$specimen = Specimen::getById($specimen_id);
$patient = Patient::getById($specimen->patientId);
$comment = $_REQUEST['comments'];
$comment_1 = $_REQUEST['comments_1'];
$dd_to = $_REQUEST['dd_to'];
$mm_to = $_REQUEST['mm_to'];
$yyyy_to = $_REQUEST['yyyy_to'];
if ($comment !== "" && $comment_1 != "") {
$comments = $comment . " , " . $comment_1;
} else {
if ($comment == "" && $comment_1 != "") {
$comments = $comment_1;
} else {
if ($comment != "" && $comment_1 == "") {
$comments = $comment;
}
}
echo "</td>";
}
}
if ($report_config->useComments == 1) {
echo "<td>";
echo $specimen->getComments();
echo "</td>";
}
if ($report_config->useReferredTo == 1) {
echo "<td>" . $specimen->getReferredToName() . "</td>";
}
if ($report_config->useDoctor == 1) {
echo "<td>" . $specimen->getDoctor() . "</td>";
}
if ($report_config->useTestName == 1 || $report_config->useResults == 1) {
$test_entry = TestType::getById($test_type_id);
$measure_list = $test_entry->getMeasures();
foreach ($measure_list as $measure) {
# Show range/options here
$range = $measure->range;
if (strpos($range, ":") !== false) {
echo "<td>";
echo "</td>";
} else {
if (strpos($range, "/") !== false) {
$range_parts = explode("/", $range);
echo "<td>";
echo "</td>";
/*
foreach($range_parts as $option_value)
{
$subtitle = trans("messages.for") . ' ' . date('Y');
}
if ($interval == 'M') {
$subtitle .= ' (' . trans("messages.monthly") . ') ';
} else {
if ($interval == 'D') {
$subtitle .= ' (' . trans("messages.daily") . ') ';
} else {
$subtitle .= ' (' . trans("messages.weekly") . ') ';
}
}
if ($testCategory) {
$subtitle .= ' - ' . TestCategory::find($testCategory)->name;
}
if ($testType) {
$subtitle .= '(' . TestType::find($testType)->name . ')';
}
echo '"' . $subtitle . '"';
?>
},
credits: {
enabled: 'false'
},
xAxis: {
type: 'datetime',
dateTimeLabelFormats: {
month: '%e. %b',
year: '%b'
},
},
yAxis: {
public function run()
{
/* Users table */
$usersData = array(array("username" => "administrator", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "kBLIS Administrator", "designation" => "Programmer"), array("username" => "external", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "External System User", "designation" => "Administrator", "image" => "/i/users/user-2.jpg"), array("username" => "lmorena", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "L. Morena", "designation" => "Lab Technologist", "image" => "/i/users/user-3.png"), array("username" => "abumeyang", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "A. Abumeyang", "designation" => "Doctor"));
foreach ($usersData as $user) {
$users[] = User::create($user);
}
$this->command->info('users seeded');
/* Specimen Types table */
$specTypesData = array(array("name" => "Ascitic Tap"), array("name" => "Aspirate"), array("name" => "CSF"), array("name" => "Dried Blood Spot"), array("name" => "High Vaginal Swab"), array("name" => "Nasal Swab"), array("name" => "Plasma"), array("name" => "Plasma EDTA"), array("name" => "Pleural Tap"), array("name" => "Pus Swab"), array("name" => "Rectal Swab"), array("name" => "S***n"), array("name" => "Serum"), array("name" => "Skin"), array("name" => "Sputum"), array("name" => "Stool"), array("name" => "Synovial Fluid"), array("name" => "Throat Swab"), array("name" => "Urethral Smear"), array("name" => "Urine"), array("name" => "Vaginal Smear"), array("name" => "Water"), array("name" => "Whole Blood"));
foreach ($specTypesData as $specimenType) {
$specTypes[] = SpecimenType::create($specimenType);
}
$this->command->info('specimen_types seeded');
/* Test Categories table - These map on to the lab sections */
$test_categories = TestCategory::create(array("name" => "PARASITOLOGY", "description" => ""));
$lab_section_microbiology = TestCategory::create(array("name" => "MICROBIOLOGY", "description" => ""));
$this->command->info('test_categories seeded');
/* Measure Types */
$measureTypes = array(array("id" => "1", "name" => "Numeric Range"), array("id" => "2", "name" => "Alphanumeric Values"), array("id" => "3", "name" => "Autocomplete"), array("id" => "4", "name" => "Free Text"));
foreach ($measureTypes as $measureType) {
MeasureType::create($measureType);
}
$this->command->info('measure_types seeded');
/* Measures table */
$measureBSforMPS = Measure::create(array("measure_type_id" => "2", "name" => "BS for mps", "unit" => ""));
$measure1 = Measure::create(array("measure_type_id" => "2", "name" => "Grams stain", "unit" => ""));
$measure2 = Measure::create(array("measure_type_id" => "2", "name" => "SERUM AMYLASE", "unit" => ""));
$measure3 = Measure::create(array("measure_type_id" => "2", "name" => "calcium", "unit" => ""));
$measure4 = Measure::create(array("measure_type_id" => "2", "name" => "SGOT", "unit" => ""));
$measure5 = Measure::create(array("measure_type_id" => "2", "name" => "Indirect COOMBS test", "unit" => ""));
$measure6 = Measure::create(array("measure_type_id" => "2", "name" => "Direct COOMBS test", "unit" => ""));
$measure7 = Measure::create(array("measure_type_id" => "2", "name" => "Du test", "unit" => ""));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "No mps seen", "interpretation" => "Negative"));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "+", "interpretation" => "Positive"));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "++", "interpretation" => "Positive"));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "+++", "interpretation" => "Positive"));
MeasureRange::create(array("measure_id" => $measure1->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure1->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure2->id, "alphanumeric" => "Low"));
MeasureRange::create(array("measure_id" => $measure2->id, "alphanumeric" => "High"));
MeasureRange::create(array("measure_id" => $measure2->id, "alphanumeric" => "Normal"));
MeasureRange::create(array("measure_id" => $measure3->id, "alphanumeric" => "High"));
MeasureRange::create(array("measure_id" => $measure3->id, "alphanumeric" => "Low"));
MeasureRange::create(array("measure_id" => $measure3->id, "alphanumeric" => "Normal"));
MeasureRange::create(array("measure_id" => $measure4->id, "alphanumeric" => "High"));
MeasureRange::create(array("measure_id" => $measure4->id, "alphanumeric" => "Low"));
MeasureRange::create(array("measure_id" => $measure4->id, "alphanumeric" => "Normal"));
MeasureRange::create(array("measure_id" => $measure5->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure5->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure6->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure6->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure7->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure7->id, "alphanumeric" => "Negative"));
$measures = array(array("measure_type_id" => "1", "name" => "URIC ACID", "unit" => "mg/dl"), array("measure_type_id" => "4", "name" => "CSF for biochemistry", "unit" => ""), array("measure_type_id" => "4", "name" => "PSA", "unit" => ""), array("measure_type_id" => "1", "name" => "Total", "unit" => "mg/dl"), array("measure_type_id" => "1", "name" => "Alkaline Phosphate", "unit" => "u/l"), array("measure_type_id" => "1", "name" => "Direct", "unit" => "mg/dl"), array("measure_type_id" => "1", "name" => "Total Proteins", "unit" => ""), array("measure_type_id" => "4", "name" => "LFTS", "unit" => "NULL"), array("measure_type_id" => "1", "name" => "Chloride", "unit" => "mmol/l"), array("measure_type_id" => "1", "name" => "Potassium", "unit" => "mmol/l"), array("measure_type_id" => "1", "name" => "Sodium", "unit" => "mmol/l"), array("measure_type_id" => "4", "name" => "Electrolytes", "unit" => ""), array("measure_type_id" => "1", "name" => "Creatinine", "unit" => "mg/dl"), array("measure_type_id" => "1", "name" => "Urea", "unit" => "mg/dl"), array("measure_type_id" => "4", "name" => "RFTS", "unit" => ""), array("measure_type_id" => "4", "name" => "TFT", "unit" => ""));
foreach ($measures as $measure) {
Measure::create($measure);
}
$measureGXM = Measure::create(array("measure_type_id" => "4", "name" => "GXM", "unit" => ""));
$measureBG = Measure::create(array("measure_type_id" => "2", "name" => "Blood Grouping", "unit" => ""));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "O-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "O+"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "A-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "A+"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "B-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "B+"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "AB-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "AB+"));
$measureHB = Measure::create(array("measure_type_id" => Measure::NUMERIC, "name" => "HB", "unit" => "g/dL"));
$measuresUrinalysisData = array(array("measure_type_id" => "4", "name" => "Urine microscopy", "unit" => ""), array("measure_type_id" => "4", "name" => "Pus cells", "unit" => ""), array("measure_type_id" => "4", "name" => "S. haematobium", "unit" => ""), array("measure_type_id" => "4", "name" => "T. vaginalis", "unit" => ""), array("measure_type_id" => "4", "name" => "Yeast cells", "unit" => ""), array("measure_type_id" => "4", "name" => "Red blood cells", "unit" => ""), array("measure_type_id" => "4", "name" => "Bacteria", "unit" => ""), array("measure_type_id" => "4", "name" => "Spermatozoa", "unit" => ""), array("measure_type_id" => "4", "name" => "Epithelial cells", "unit" => ""), array("measure_type_id" => "4", "name" => "ph", "unit" => ""), array("measure_type_id" => "4", "name" => "Urine chemistry", "unit" => ""), array("measure_type_id" => "4", "name" => "Glucose", "unit" => ""), array("measure_type_id" => "4", "name" => "Ketones", "unit" => ""), array("measure_type_id" => "4", "name" => "Proteins", "unit" => ""), array("measure_type_id" => "4", "name" => "Blood", "unit" => ""), array("measure_type_id" => "4", "name" => "Bilirubin", "unit" => ""), array("measure_type_id" => "4", "name" => "Urobilinogen Phenlpyruvic acid", "unit" => ""), array("measure_type_id" => "4", "name" => "pH", "unit" => ""));
foreach ($measuresUrinalysisData as $measureU) {
$measuresUrinalysis[] = Measure::create($measureU);
}
$measuresWBCData = array(array("measure_type_id" => Measure::NUMERIC, "name" => "WBC", "unit" => "x10³/µL"), array("measure_type_id" => Measure::NUMERIC, "name" => "Lym", "unit" => "L"), array("measure_type_id" => Measure::NUMERIC, "name" => "Mon", "unit" => "*"), array("measure_type_id" => Measure::NUMERIC, "name" => "Neu", "unit" => "*"), array("measure_type_id" => Measure::NUMERIC, "name" => "Eos", "unit" => ""), array("measure_type_id" => Measure::NUMERIC, "name" => "Baso", "unit" => ""));
foreach ($measuresWBCData as $value) {
$measuresWBC[] = Measure::create($value);
}
$measureRangesWBC = array(array("measure_id" => $measuresWBC[0]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 4, "range_upper" => 11), array("measure_id" => $measuresWBC[1]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 1.5, "range_upper" => 4), array("measure_id" => $measuresWBC[2]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 0.1, "range_upper" => 9), array("measure_id" => $measuresWBC[3]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 2.5, "range_upper" => 7), array("measure_id" => $measuresWBC[4]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 0, "range_upper" => 6), array("measure_id" => $measuresWBC[5]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 0, "range_upper" => 2));
foreach ($measureRangesWBC as $value) {
MeasureRange::create($value);
}
$this->command->info('measures seeded');
/* Test Types table */
$testTypeBS = TestType::create(array("name" => "BS for mps", "test_category_id" => $test_categories->id, "orderable_test" => 1));
$testTypeStoolCS = TestType::create(array("name" => "Stool for C/S", "test_category_id" => $lab_section_microbiology->id));
$testTypeGXM = TestType::create(array("name" => "GXM", "test_category_id" => $test_categories->id));
$testTypeHB = TestType::create(array("name" => "HB", "test_category_id" => $test_categories->id, "orderable_test" => 1));
$testTypeUrinalysis = TestType::create(array("name" => "Urinalysis", "test_category_id" => $test_categories->id));
$testTypeWBC = TestType::create(array("name" => "WBC", "test_category_id" => $test_categories->id));
$this->command->info('test_types seeded');
/* TestType Measure table */
TestTypeMeasure::create(array("test_type_id" => $testTypeBS->id, "measure_id" => $measureBSforMPS->id));
TestTypeMeasure::create(array("test_type_id" => $testTypeGXM->id, "measure_id" => $measureGXM->id));
TestTypeMeasure::create(array("test_type_id" => $testTypeGXM->id, "measure_id" => $measureBG->id));
TestTypeMeasure::create(array("test_type_id" => $testTypeHB->id, "measure_id" => $measureHB->id));
foreach ($measuresUrinalysis as $value) {
TestTypeMeasure::create(array("test_type_id" => $testTypeUrinalysis->id, "measure_id" => $value->id));
}
foreach ($measuresWBC as $value) {
TestTypeMeasure::create(array("test_type_id" => $testTypeWBC->id, "measure_id" => $value->id));
}
$this->command->info('testtype_measures seeded');
/* testtype_specimentypes table */
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeBS->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeGXM->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[6]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[7]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[12]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeUrinalysis->id, "specimen_type_id" => $specTypes[19]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeUrinalysis->id, "specimen_type_id" => $specTypes[20]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeWBC->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
$this->command->info('testtype_specimentypes seeded');
/* Patients table */
$patients_array = array(array("name" => "Jam Felicia", "email" => "*****@*****.**", "patient_number" => "1002", "dob" => "2000-01-01", "gender" => "1", "created_by" => "2"), array("name" => "Emma Wallace", "email" => "*****@*****.**", "patient_number" => "1003", "dob" => "1990-03-01", "gender" => "1", "created_by" => "2"), array("name" => "Jack Tee", "email" => "*****@*****.**", "patient_number" => "1004", "dob" => "1999-12-18", "gender" => "0", "created_by" => "1"), array("name" => "Hu Jintao", "email" => "*****@*****.**", "patient_number" => "1005", "dob" => "1956-10-28", "gender" => "0", "created_by" => "2"), array("name" => "Lance Opiyo", "email" => "*****@*****.**", "patient_number" => "2150", "dob" => "2012-01-01", "gender" => "0", "created_by" => "1"));
foreach ($patients_array as $pat) {
$patients[] = Patient::create($pat);
}
$this->command->info('patients seeded');
/* Test Phase table */
$test_phases = array(array("id" => "1", "name" => "Pre-Analytical"), array("id" => "2", "name" => "Analytical"), array("id" => "3", "name" => "Post-Analytical"));
foreach ($test_phases as $test_phase) {
TestPhase::create($test_phase);
}
$this->command->info('test_phases seeded');
/* Test Status table */
$test_statuses = array(array("id" => "1", "name" => "not-received", "test_phase_id" => "1"), array("id" => "2", "name" => "pending", "test_phase_id" => "1"), array("id" => "3", "name" => "started", "test_phase_id" => "2"), array("id" => "4", "name" => "completed", "test_phase_id" => "3"), array("id" => "5", "name" => "verified", "test_phase_id" => "3"));
foreach ($test_statuses as $test_status) {
TestStatus::create($test_status);
}
$this->command->info('test_statuses seeded');
/* Specimen Status table */
$specimen_statuses = array(array("id" => "1", "name" => "specimen-not-collected"), array("id" => "2", "name" => "specimen-accepted"), array("id" => "3", "name" => "specimen-rejected"));
foreach ($specimen_statuses as $specimen_status) {
SpecimenStatus::create($specimen_status);
}
$this->command->info('specimen_statuses seeded');
/* Visits table */
for ($i = 0; $i < 7; $i++) {
$visits[] = Visit::create(array("patient_id" => $patients[rand(0, count($patients) - 1)]->id));
}
$this->command->info('visits seeded');
/* Rejection Reasons table */
$rejection_reasons_array = array(array("reason" => "Poorly labelled"), array("reason" => "Over saturation"), array("reason" => "Insufficient Sample"), array("reason" => "Scattered"), array("reason" => "Clotted Blood"), array("reason" => "Two layered spots"), array("reason" => "Serum rings"), array("reason" => "Scratched"), array("reason" => "Haemolysis"), array("reason" => "Spots that cannot elute"), array("reason" => "Leaking"), array("reason" => "Broken Sample Container"), array("reason" => "Mismatched sample and form labelling"), array("reason" => "Missing Labels on container and tracking form"), array("reason" => "Empty Container"), array("reason" => "Samples without tracking forms"), array("reason" => "Poor transport"), array("reason" => "Lipaemic"), array("reason" => "Wrong container/Anticoagulant"), array("reason" => "Request form without samples"), array("reason" => "Missing collection date on specimen / request form."), array("reason" => "Name and signature of requester missing"), array("reason" => "Mismatched information on request form and specimen container."), array("reason" => "Request form contaminated with specimen"), array("reason" => "Duplicate specimen received"), array("reason" => "Delay between specimen collection and arrival in the laboratory"), array("reason" => "Inappropriate specimen packing"), array("reason" => "Inappropriate specimen for the test"), array("reason" => "Inappropriate test for the clinical condition"), array("reason" => "No Label"), array("reason" => "Leaking"), array("reason" => "No Sample in the Container"), array("reason" => "No Request Form"), array("reason" => "Missing Information Required"));
foreach ($rejection_reasons_array as $rejection_reason) {
$rejection_reasons[] = RejectionReason::create($rejection_reason);
}
$this->command->info('rejection_reasons seeded');
/* Specimen table */
$this->command->info('specimens seeded');
$now = new DateTime();
/* Test table */
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::NOT_RECEIVED, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::NOT_RECEIVED, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeHB->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeGXM->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "created_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Dr. Abou Meyang"));
$test_gxm_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeGXM->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Perfect match.", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Dr. Abou Meyang", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT12M8S'))->format('Y-m-d H:i:s')));
$test_hb_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeHB->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Do nothing!", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Genghiz Khan", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT5M23S'))->format('Y-m-d H:i:s')));
$tests_accepted_started = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeGXM->id, "specimen_id" => $this->createSpecimen(Test::STARTED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::STARTED, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id, "time_started" => $now->format('Y-m-d H:i:s')));
$tests_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Positive", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Ariel Smith", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT7M34S'))->format('Y-m-d H:i:s')));
$tests_accepted_verified = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::VERIFIED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Very high concentration of parasites.", "test_status_id" => Test::VERIFIED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "verified_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Genghiz Khan", "time_started" => $now, "time_completed" => $now->add(new DateInterval('PT5M17S'))->format('Y-m-d H:i:s'), "time_verified" => $now->add(new DateInterval('PT112M33S'))->format('Y-m-d H:i:s')));
$tests_rejected_pending = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::REJECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id, $users[rand(0, count($users) - 1)]->id, $rejection_reasons[rand(0, count($rejection_reasons) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id, "time_started" => $now->format('Y-m-d H:i:s')));
// WBC Started
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeWBC->id, "specimen_id" => $this->createSpecimen(Test::STARTED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Fred Astaire", "created_by" => $users[rand(0, count($users) - 1)]->id));
$tests_rejected_started = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::STARTED, Specimen::REJECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id, $users[rand(0, count($users) - 1)]->id, $rejection_reasons[rand(0, count($rejection_reasons) - 1)]->id), "test_status_id" => Test::STARTED, "created_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Bony Em", "time_started" => $now->format('Y-m-d H:i:s')));
$tests_rejected_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::REJECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id, $users[rand(0, count($users) - 1)]->id, $rejection_reasons[rand(0, count($rejection_reasons) - 1)]->id), "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Ed Buttler", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT30M4S'))->format('Y-m-d H:i:s')));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeUrinalysis->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeWBC->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
$test_urinalysis_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeUrinalysis->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Whats this !!!! ###%%% ^ *() /", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Dr. Abou Meyang", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT12M8S'))->format('Y-m-d H:i:s'), "external_id" => 596699));
$this->command->info('tests seeded');
/* Test Results table */
$testResults = array(array("test_id" => $tests_accepted_verified->id, "measure_id" => $measureBSforMPS->id, "result" => "+++"), array("test_id" => $tests_accepted_completed->id, "measure_id" => $measureBSforMPS->id, "result" => "++"), array("test_id" => $test_gxm_accepted_completed->id, "measure_id" => $measureGXM->id, "result" => "COMPATIBLE WITH 061832914 B/G A POS.EXPIRY19/8/14"), array("test_id" => $test_gxm_accepted_completed->id, "measure_id" => $measureBG->id, "result" => "A+"), array("test_id" => $test_hb_accepted_completed->id, "measure_id" => $measureHB->id, "result" => "13.7"), array("test_id" => $tests_rejected_completed->id, "measure_id" => $measureBSforMPS->id, "result" => "No mps seen"));
foreach ($measuresUrinalysis as $key => $measure) {
$testResults[] = array("test_id" => $test_urinalysis_accepted_completed->id, "measure_id" => $measure->id, "result" => $key . "50");
}
foreach ($testResults as $testResult) {
TestResult::create($testResult);
}
$this->command->info('test results seeded');
/* Permissions table */
$permissions = array(array("name" => "view_names", "display_name" => "Can view patient names"), array("name" => "manage_patients", "display_name" => "Can add patients"), array("name" => "receive_external_test", "display_name" => "Can receive test requests"), array("name" => "request_test", "display_name" => "Can request new test"), array("name" => "accept_test_specimen", "display_name" => "Can accept test specimen"), array("name" => "reject_test_specimen", "display_name" => "Can reject test specimen"), array("name" => "change_test_specimen", "display_name" => "Can change test specimen"), array("name" => "start_test", "display_name" => "Can start tests"), array("name" => "enter_test_results", "display_name" => "Can enter tests results"), array("name" => "edit_test_results", "display_name" => "Can edit test results"), array("name" => "verify_test_results", "display_name" => "Can verify test results"), array("name" => "send_results_to_external_system", "display_name" => "Can send test results to external systems"), array("name" => "refer_specimens", "display_name" => "Can refer specimens"), array("name" => "manage_users", "display_name" => "Can manage users"), array("name" => "manage_test_catalog", "display_name" => "Can manage test catalog"), array("name" => "manage_lab_configurations", "display_name" => "Can manage lab configurations"), array("name" => "view_reports", "display_name" => "Can view reports"), array("name" => "manage_inventory", "display_name" => "Can manage inventory"), array("name" => "request_topup", "display_name" => "Can request top-up"), array("name" => "manage_qc", "display_name" => "Can manage Quality Control"));
foreach ($permissions as $permission) {
Permission::create($permission);
}
$this->command->info('Permissions table seeded');
/* Roles table */
$roles = array(array("name" => "Superadmin"), array("name" => "Technologist"), array("name" => "Receptionist"));
foreach ($roles as $role) {
Role::create($role);
}
$this->command->info('Roles table seeded');
$user1 = User::find(1);
$role1 = Role::find(1);
$permissions = Permission::all();
//Assign all permissions to role administrator
foreach ($permissions as $permission) {
$role1->attachPermission($permission);
}
//Assign role Administrator to user 1 administrator
$user1->attachRole($role1);
/* Instruments table */
$instrumentsData = array("name" => "Celltac F Mek 8222", "description" => "Automatic analyzer with 22 parameters and WBC 5 part diff Hematology Analyzer", "driver_name" => "KBLIS\\Plugins\\CelltacFMachine", "ip" => "192.168.1.12", "hostname" => "HEMASERVER");
$instrument = Instrument::create($instrumentsData);
$instrument->testTypes()->attach(array($testTypeWBC->id));
$this->command->info('Instruments table seeded');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596699,"parentLabNo":0,"requestingClinician":"frankenstein Dr",
"investigation":"Urinalysis","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596700,"parentLabNo":596699,"requestingClinician":"frankenstein Dr",
"investigation":"Urine microscopy","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596701,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Pus cells","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596702,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"S. haematobium","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596703,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"T. vaginalis","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596704,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Yeast cells","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596705,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Red blood cells","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596706,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Bacteria","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596707,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Spermatozoa","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596708,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Epithelial cells","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596709,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"ph","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596710,"parentLabNo":596699,"requestingClinician":"frankenstein Dr",
"investigation":"Urine chemistry","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596711,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Glucose","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596712,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Ketones","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596713,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Proteins","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596714,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Blood","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596715,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Bilirubin","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596716,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Urobilinogen Phenlpyruvic acid","requestDate":"2014-10-14 10:20:37","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596717,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"pH","requestDate":"2014-10-14 10:20:37","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
for ($i = 0; $i < count($labRequestUrinalysis); $i++) {
$dumper = new ExternalDump();
$dumper->lab_no = $labRequestUrinalysis[$i]->labNo;
$dumper->parent_lab_no = $labRequestUrinalysis[$i]->parentLabNo;
$dumper->test_id = $i == 0 ? $test_urinalysis_accepted_completed->id : null;
$dumper->requesting_clinician = $labRequestUrinalysis[$i]->requestingClinician;
$dumper->investigation = $labRequestUrinalysis[$i]->investigation;
$dumper->provisional_diagnosis = '';
$dumper->request_date = $labRequestUrinalysis[$i]->requestDate;
$dumper->order_stage = $labRequestUrinalysis[$i]->orderStage;
$dumper->patient_visit_number = $labRequestUrinalysis[$i]->patientVisitNumber;
$dumper->patient_id = $labRequestUrinalysis[$i]->patient->id;
$dumper->full_name = $labRequestUrinalysis[$i]->patient->fullName;
$dumper->dob = $labRequestUrinalysis[$i]->patient->dateOfBirth;
$dumper->gender = $labRequestUrinalysis[$i]->patient->gender;
$dumper->address = $labRequestUrinalysis[$i]->address->address;
$dumper->postal_code = '';
$dumper->phone_number = $labRequestUrinalysis[$i]->address->phoneNumber;
$dumper->city = $labRequestUrinalysis[$i]->address->city;
$dumper->cost = $labRequestUrinalysis[$i]->cost;
$dumper->receipt_number = $labRequestUrinalysis[$i]->receiptNumber;
$dumper->receipt_type = $labRequestUrinalysis[$i]->receiptType;
$dumper->waiver_no = '';
$dumper->system_id = "sanitas";
$dumper->save();
}
$this->command->info('ExternalDump table seeded');
// Begin seed for prevalence rates report
/* Test Categories table - These map on to the lab sections */
$lab_section_hematology = TestCategory::create(array("name" => "HEMATOLOGY", "description" => ""));
$lab_section_serology = TestCategory::create(array("name" => "SEROLOGY", "description" => ""));
$lab_section_trans = TestCategory::create(array("name" => "BLOOD TRANSFUSION", "description" => ""));
$this->command->info('Lab Sections seeded');
/* Test Types for prevalence */
$test_types_salmonella = TestType::create(array("name" => "Salmonella Antigen Test", "test_category_id" => $test_categories->id));
$test_types_direct = TestType::create(array("name" => "Direct COOMBS Test", "test_category_id" => $lab_section_trans->id));
$test_types_du = TestType::create(array("name" => "DU Test", "test_category_id" => $lab_section_trans->id));
$test_types_sickling = TestType::create(array("name" => "Sickling Test", "test_category_id" => $lab_section_hematology->id));
$test_types_borrelia = TestType::create(array("name" => "Borrelia", "test_category_id" => $test_categories->id));
$test_types_vdrl = TestType::create(array("name" => "VDRL", "test_category_id" => $lab_section_serology->id));
$test_types_pregnancy = TestType::create(array("name" => "Pregnancy Test", "test_category_id" => $lab_section_serology->id));
$test_types_brucella = TestType::create(array("name" => "Brucella", "test_category_id" => $lab_section_serology->id));
$test_types_pylori = TestType::create(array("name" => "H. Pylori", "test_category_id" => $lab_section_serology->id));
$this->command->info('Test Types seeded');
/* Test Types and specimen types relationship for prevalence */
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_salmonella->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_direct->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_du->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_sickling->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_borrelia->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_vdrl->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_pregnancy->id, "20"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_brucella->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_pylori->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($testTypeStoolCS->id, "16"));
$this->command->info('TestTypes/SpecimenTypes seeded');
/*New measures for prevalence*/
$measure_salmonella = Measure::create(array("measure_type_id" => "2", "name" => "Salmonella Antigen Test", "unit" => ""));
$measure_direct = Measure::create(array("measure_type_id" => "2", "name" => "Direct COOMBS Test", "unit" => ""));
$measure_du = Measure::create(array("measure_type_id" => "2", "name" => "Du Test", "unit" => ""));
$measure_sickling = Measure::create(array("measure_type_id" => "2", "name" => "Sickling Test", "unit" => ""));
$measure_borrelia = Measure::create(array("measure_type_id" => "2", "name" => "Borrelia", "unit" => ""));
$measure_vdrl = Measure::create(array("measure_type_id" => "2", "name" => "VDRL", "unit" => ""));
$measure_pregnancy = Measure::create(array("measure_type_id" => "2", "name" => "Pregnancy Test", "unit" => ""));
$measure_brucella = Measure::create(array("measure_type_id" => "2", "name" => "Brucella", "unit" => ""));
$measure_pylori = Measure::create(array("measure_type_id" => "2", "name" => "H. Pylori", "unit" => ""));
MeasureRange::create(array("measure_id" => $measure_salmonella->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_salmonella->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_direct->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_direct->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_du->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_du->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_sickling->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_sickling->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_borrelia->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_borrelia->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_vdrl->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_vdrl->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_pregnancy->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_pregnancy->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_brucella->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_brucella->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_pylori->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_pylori->id, "alphanumeric" => "Negative"));
$this->command->info('Measures seeded again');
/* TestType Measure for prevalence */
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_salmonella->id, "measure_id" => $measure_salmonella->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_direct->id, "measure_id" => $measure_direct->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_du->id, "measure_id" => $measure_du->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_sickling->id, "measure_id" => $measure_sickling->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_borrelia->id, "measure_id" => $measure_borrelia->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_vdrl->id, "measure_id" => $measure_vdrl->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_pregnancy->id, "measure_id" => $measure_pregnancy->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_brucella->id, "measure_id" => $measure_brucella->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_pylori->id, "measure_id" => $measure_pylori->id));
$this->command->info('Test Type Measures seeded again');
/* Tests for prevalence rates */
$tests_completed_one = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_salmonella->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-07-23 15:16:15", "time_started" => "2014-07-23 16:07:15", "time_completed" => "2014-07-23 16:17:19"));
$tests_completed_two = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_direct->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-07-26 10:16:15", "time_started" => "2014-07-26 13:27:15", "time_completed" => "2014-07-26 13:57:01"));
$tests_completed_three = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_du->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-08-13 09:16:15", "time_started" => "2014-08-13 10:07:15", "time_completed" => "2014-08-13 10:18:11"));
$tests_completed_four = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_sickling->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-08-16 09:06:53", "time_started" => "2014-08-16 09:09:15", "time_completed" => "2014-08-16 09:23:37"));
$tests_completed_five = Test::create(array("visit_id" => "5", "test_type_id" => $test_types_borrelia->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-08-23 10:16:15", "time_started" => "2014-08-23 11:54:39", "time_completed" => "2014-08-23 12:07:18"));
$tests_completed_six = Test::create(array("visit_id" => "6", "test_type_id" => $test_types_vdrl->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-09-07 07:23:15", "time_started" => "2014-09-07 08:07:20", "time_completed" => "2014-09-07 08:41:13"));
$tests_completed_seven = Test::create(array("visit_id" => "7", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-03 11:52:15", "time_started" => "2014-10-03 12:31:04", "time_completed" => "2014-10-03 12:45:18"));
$tests_completed_eight = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_brucella->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-15 17:01:15", "time_started" => "2014-10-15 17:05:24", "time_completed" => "2014-10-15 18:07:15"));
$tests_completed_nine = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_pylori->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-23 16:06:15", "time_started" => "2014-10-23 16:07:15", "time_completed" => "2014-10-23 16:39:02"));
$tests_completed_ten = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_salmonella->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-21 19:16:15", "time_started" => "2014-10-21 19:17:15", "time_completed" => "2014-10-21 19:52:40"));
$tests_verified_one = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_direct->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-07-21 19:16:15", "time_started" => "2014-07-21 19:17:15", "time_completed" => "2014-07-21 19:52:40", "time_verified" => "2014-07-21 19:53:48"));
$tests_verified_two = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_du->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-08-21 19:16:15", "time_started" => "2014-08-21 19:17:15", "time_completed" => "2014-08-21 19:52:40", "time_verified" => "2014-08-21 19:53:48"));
$tests_verified_three = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_sickling->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-08-26 19:16:15", "time_started" => "2014-08-26 19:17:15", "time_completed" => "2014-08-26 19:52:40", "time_verified" => "2014-08-26 19:53:48"));
$tests_verified_four = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_borrelia->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-21 19:16:15", "time_started" => "2014-09-21 19:17:15", "time_completed" => "2014-09-21 19:52:40", "time_verified" => "2014-09-21 19:53:48"));
$tests_verified_five = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_vdrl->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-22 19:16:15", "time_started" => "2014-09-22 19:17:15", "time_completed" => "2014-09-22 19:52:40", "time_verified" => "2014-09-22 19:53:48"));
$tests_verified_six = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-23 19:16:15", "time_started" => "2014-09-23 19:17:15", "time_completed" => "2014-09-23 19:52:40", "time_verified" => "2014-09-23 19:53:48"));
$tests_verified_seven = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_brucella->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-27 19:16:15", "time_started" => "2014-09-27 19:17:15", "time_completed" => "2014-09-27 19:52:40", "time_verified" => "2014-09-27 19:53:48"));
$tests_verified_eight = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_pylori->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-10-22 19:16:15", "time_started" => "2014-10-22 19:17:15", "time_completed" => "2014-10-22 19:52:40", "time_verified" => "2014-10-22 19:53:48"));
$tests_verified_nine = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-10-17 19:16:15", "time_started" => "2014-10-17 19:17:15", "time_completed" => "2014-10-17 19:52:40", "time_verified" => "2014-10-17 19:53:48"));
$tests_verified_ten = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-10-02 19:16:15", "time_started" => "2014-10-02 19:17:15", "time_completed" => "2014-10-02 19:52:40", "time_verified" => "2014-10-02 19:53:48"));
$this->command->info('Tests seeded again');
// Test results for prevalence
$results = array(array("test_id" => $tests_completed_one->id, "measure_id" => $measure_salmonella->id, "result" => "Positive"), array("test_id" => $tests_completed_two->id, "measure_id" => $measure_direct->id, "result" => "Positive"), array("test_id" => $tests_completed_three->id, "measure_id" => $measure_du->id, "result" => "Positive"), array("test_id" => $tests_completed_four->id, "measure_id" => $measure_sickling->id, "result" => "Positive"), array("test_id" => $tests_completed_five->id, "measure_id" => $measure_borrelia->id, "result" => "Positive"), array("test_id" => $tests_completed_six->id, "measure_id" => $measure_vdrl->id, "result" => "Positive"), array("test_id" => $tests_completed_seven->id, "measure_id" => $measure_pregnancy->id, "result" => "Positive"), array("test_id" => $tests_completed_eight->id, "measure_id" => $measure_brucella->id, "result" => "Positive"), array("test_id" => $tests_completed_nine->id, "measure_id" => $measure_pylori->id, "result" => "Positive"), array("test_id" => $tests_completed_ten->id, "measure_id" => $measure_salmonella->id, "result" => "Positive"), array("test_id" => $tests_verified_one->id, "measure_id" => $measure_direct->id, "result" => "Negative"), array("test_id" => $tests_verified_two->id, "measure_id" => $measure_du->id, "result" => "Positive"), array("test_id" => $tests_verified_three->id, "measure_id" => $measure_sickling->id, "result" => "Positive"), array("test_id" => $tests_verified_four->id, "measure_id" => $measure_borrelia->id, "result" => "Negative"), array("test_id" => $tests_verified_five->id, "measure_id" => $measure_vdrl->id, "result" => "Negative"), array("test_id" => $tests_verified_six->id, "measure_id" => $measure_pregnancy->id, "result" => "Negative"), array("test_id" => $tests_verified_seven->id, "measure_id" => $measure_brucella->id, "result" => "Positive"), array("test_id" => $tests_verified_eight->id, "measure_id" => $measure_pylori->id, "result" => "Positive"), array("test_id" => $tests_verified_nine->id, "measure_id" => $measure_pregnancy->id, "result" => "Negative"), array("test_id" => $tests_verified_ten->id, "measure_id" => $measure_pregnancy->id, "result" => "Positive"));
foreach ($results as $result) {
TestResult::create($result);
}
$this->command->info('Test results seeded again');
// End prevalence rates seed
//Seed for facilities
$facilitiesSeed = array(array('name' => "WALTER REED"), array('name' => "AGA KHAN UNIVERSITY HOSPITAL"), array('name' => "TEL AVIV GENERAL HOSPITAL"), array('name' => "GK PRISON DISPENSARY"), array('name' => "KEMRI ALUPE"), array('name' => "AMPATH"));
foreach ($facilitiesSeed as $facility) {
Facility::create($facility);
}
$this->command->info('Facilities table seeded');
//Seed for suppliers
$supplier = Supplier::create(array("name" => "UNICEF", "phone_no" => "0775112233", "email" => "*****@*****.**", "physical_address" => "un-hqtr"));
$this->command->info('Suppliers table seeded');
//Seed for metrics
$metric = Metric::create(array("name" => "mg", "description" => "milligram"));
$this->command->info('Metrics table seeded');
//Seed for commodities
$commodity = Commodity::create(array("name" => "Ampicillin", "description" => "Capsule 250mg", "metric_id" => $metric->id, "unit_price" => "500", "item_code" => "no clue", "storage_req" => "no clue", "min_level" => "100000", "max_level" => "400000"));
$this->command->info('Commodities table seeded');
//Seed for receipts
$receipt = Receipt::create(array("commodity_id" => $commodity->id, "supplier_id" => $supplier->id, "quantity" => "130000", "batch_no" => "002720", "expiry_date" => "2018-10-14", "user_id" => "1"));
$this->command->info('Receipts table seeded');
//Seed for Top Up Request
$topUpRequest = TopupRequest::create(array("commodity_id" => $commodity->id, "test_category_id" => 1, "order_quantity" => "1500", "user_id" => 1, "remarks" => "-"));
$this->command->info('Top Up Requests table seeded');
//Seed for Issues
Issue::create(array("receipt_id" => $receipt->id, "topup_request_id" => $topUpRequest->id, "quantity_issued" => "1700", "issued_to" => 1, "user_id" => 1, "remarks" => "-"));
$this->command->info('Issues table seeded');
//Seed for diseases
$malaria = Disease::create(array('name' => "Malaria"));
$typhoid = Disease::create(array('name' => "Typhoid"));
$dysentry = Disease::create(array('name' => "Shigella Dysentry"));
$this->command->info("Dieases table seeded");
$reportDiseases = array(array("test_type_id" => $testTypeBS->id, "disease_id" => $malaria->id), array("test_type_id" => $test_types_salmonella->id, "disease_id" => $typhoid->id), array("test_type_id" => $testTypeStoolCS->id, "disease_id" => $dysentry->id));
foreach ($reportDiseases as $reportDisease) {
ReportDisease::create($reportDisease);
}
$this->command->info("Report Disease table seeded");
//Seeding for QC
$lots = array(array('number' => '0001', 'description' => 'First lot', 'expiry' => date('Y-m-d H:i:s', strtotime("+6 months")), 'instrument_id' => 1), array('number' => '0002', 'description' => 'Second lot', 'expiry' => date('Y-m-d H:i:s', strtotime("+7 months")), 'instrument_id' => 1));
foreach ($lots as $lot) {
$lot = Lot::create($lot);
}
$this->command->info("Lot table seeded");
//Control seeding
$controls = array(array('name' => 'Humatrol P', 'description' => 'HUMATROL P control serum has been designed to provide a suitable basis for the quality control (imprecision, inaccuracy) in the clinical chemical laboratory.', 'lot_id' => 1), array('name' => 'Full Blood Count', 'description' => 'Né pas touchér', 'lot_id' => 1));
foreach ($controls as $control) {
Control::create($control);
}
$this->command->info("Control table seeded");
//Control measures
$controlMeasures = array(array('name' => 'ca', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'pi', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'mg', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'na', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'K', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'WBC', 'unit' => 'x 103/uL', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'RBC', 'unit' => 'x 106/uL', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'HGB', 'unit' => 'g/dl', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'HCT', 'unit' => '%', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'MCV', 'unit' => 'fl', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'MCH', 'unit' => 'pg', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'MCHC', 'unit' => 'g/dl', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'PLT', 'unit' => 'x 103/uL', 'control_id' => 2, 'control_measure_type_id' => 1));
foreach ($controlMeasures as $controlMeasure) {
ControlMeasure::create($controlMeasure);
}
$this->command->info("Control Measure table seeded");
//Control measure ranges
$controlMeasureRanges = array(array('upper_range' => '2.63', 'lower_range' => '7.19', 'control_measure_id' => 1), array('upper_range' => '11.65', 'lower_range' => '15.43', 'control_measure_id' => 2), array('upper_range' => '12.13', 'lower_range' => '19.11', 'control_measure_id' => 3), array('upper_range' => '15.73', 'lower_range' => '25.01', 'control_measure_id' => 4), array('upper_range' => '17.63', 'lower_range' => '20.12', 'control_measure_id' => 5), array('upper_range' => '6.5', 'lower_range' => '7.5', 'control_measure_id' => 6), array('upper_range' => '4.36', 'lower_range' => '5.78', 'control_measure_id' => 7), array('upper_range' => '13.8', 'lower_range' => '17.3', 'control_measure_id' => 8), array('upper_range' => '81.0', 'lower_range' => '95.0', 'control_measure_id' => 9), array('upper_range' => '1.99', 'lower_range' => '2.63', 'control_measure_id' => 10), array('upper_range' => '27.6', 'lower_range' => '33.0', 'control_measure_id' => 11), array('upper_range' => '32.8', 'lower_range' => '36.4', 'control_measure_id' => 12), array('upper_range' => '141', 'lower_range' => ' 320.0', 'control_measure_id' => 13));
foreach ($controlMeasureRanges as $controlMeasureRange) {
ControlMeasureRange::create($controlMeasureRange);
}
$this->command->info("Control Measure ranges table seeded");
//Control Tests
$controlTests = array(array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('entered_by' => 1, 'control_id' => 2, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('entered_by' => 1, 'control_id' => 2, 'created_at' => date('Y-m-d', strtotime('-2 days'))));
foreach ($controlTests as $controltest) {
ControlTest::create($controltest);
}
$this->command->info("Control test table seeded");
//Control results
$controlResults = array(array('results' => '2.78', 'control_measure_id' => 1, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '13.56', 'control_measure_id' => 2, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '14.77', 'control_measure_id' => 3, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '25.92', 'control_measure_id' => 4, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '18.87', 'control_measure_id' => 5, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '6.78', 'control_measure_id' => 1, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '15.56', 'control_measure_id' => 2, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '18.77', 'control_measure_id' => 3, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '30.92', 'control_measure_id' => 4, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '17.87', 'control_measure_id' => 5, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '8.78', 'control_measure_id' => 1, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '17.56', 'control_measure_id' => 2, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '21.77', 'control_measure_id' => 3, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '27.92', 'control_measure_id' => 4, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '22.87', 'control_measure_id' => 5, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '6.78', 'control_measure_id' => 1, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '18.56', 'control_measure_id' => 2, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '19.77', 'control_measure_id' => 3, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '12.92', 'control_measure_id' => 4, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '22.87', 'control_measure_id' => 5, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '3.78', 'control_measure_id' => 1, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '16.56', 'control_measure_id' => 2, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '17.77', 'control_measure_id' => 3, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '28.92', 'control_measure_id' => 4, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '19.87', 'control_measure_id' => 5, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '5.78', 'control_measure_id' => 1, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '15.56', 'control_measure_id' => 2, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '11.77', 'control_measure_id' => 3, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '29.92', 'control_measure_id' => 4, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '14.87', 'control_measure_id' => 5, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '9.78', 'control_measure_id' => 1, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '11.56', 'control_measure_id' => 2, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '19.77', 'control_measure_id' => 3, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '32.92', 'control_measure_id' => 4, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '29.87', 'control_measure_id' => 5, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '5.45', 'control_measure_id' => 6, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '5.01', 'control_measure_id' => 7, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '12.3', 'control_measure_id' => 8, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '89.7', 'control_measure_id' => 9, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '2.15', 'control_measure_id' => 10, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '34.0', 'control_measure_id' => 11, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '37.2', 'control_measure_id' => 12, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '141.5', 'control_measure_id' => 13, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '7.45', 'control_measure_id' => 6, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '9.01', 'control_measure_id' => 7, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '9.3', 'control_measure_id' => 8, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '94.7', 'control_measure_id' => 9, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '12.15', 'control_measure_id' => 10, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '37.0', 'control_measure_id' => 11, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '30.2', 'control_measure_id' => 12, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '121.5', 'control_measure_id' => 13, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))));
foreach ($controlResults as $controlResult) {
ControlMeasureResult::create($controlResult);
}
$this->command->info("Control results table seeded");
}
public function testCountPerStatus()
{
Input::replace($this->testTypeData);
$testType = new TestTypeController();
$testType->store();
$testTypestored = TestType::orderBy('id', 'desc')->take(1)->get()->toArray();
$testTypeSaved = TestType::find($testTypestored[0]['id']);
$count = $testTypeSaved->countPerStatus([Test::NOT_RECEIVED, Test::STARTED, Test::PENDING, Test::COMPLETED, Test::VERIFIED]);
$this->assertEquals($testTypeSaved->tests->count(), $count);
}
public function get_test_type($test_type_id)
{
global $con;
if ($_SESSION['level'] < 2 || $_SESSION['level'] > 4) {
$user = get_user_by_id($_SESSION['user_id']);
$lab_config_id = $user->labConfigId;
}
if ($lab_config_id == null) {
$lab_config_id = get_lab_config_id_admin($_SESSION['user_id']);
}
$test_type_id = mysql_real_escape_string($test_type_id, $con);
$saved_db = DbUtil::switchToLabConfig($lab_config_id);
$query_string = "SELECT * FROM test_type WHERE test_type_id={$test_type_id} LIMIT 1";
$record = query_associative_one($query_string);
$test_type = TestType::getObject($record);
//print_r($test_type);
$ret = array();
if ($test_type != null) {
$ret['info'] = $test_type;
} else {
return 0;
}
$measure_list = array();
$measure_list_objs = $test_type->getMeasures();
//print_r($measure_list);
$submeasure_list_objs = array();
$comb_measure_list = array();
// print_r($measure_list);
foreach ($measure_list_objs as $measure) {
$submeasure_list_objs = $measure->getSubmeasuresAsObj();
//echo "<br>".count($submeasure_list);
//print_r($submeasure_list);
$submeasure_count = count($submeasure_list_objs);
if ($measure->checkIfSubmeasure() == 1) {
continue;
}
if ($submeasure_count == 0) {
array_push($comb_measure_list, $measure);
} else {
array_push($comb_measure_list, $measure);
foreach ($submeasure_list_objs as $submeasure) {
array_push($comb_measure_list, $submeasure);
}
}
}
$measure_list_ids = array();
//echo "<pre>";
//print_r($comb_measure_list);
//echo "</pre>";
foreach ($comb_measure_list as $measure) {
array_push($measure_list_ids, $measure->measureId);
}
/*
echo "<pre>";
print_r($measure_list);
print_r($measure_list_ids);
echo "</pre>";
*/
$measure_list = $measure_list_ids;
//print_r($measure_list_objs);
$ret['measures'] = $measure_list_objs;
DbUtil::switchRestore($saved_db);
return $ret;
}
/**
* Pull test results from an instrument as JSON.
*
* @return Response
*/
public function getTestResult()
{
//Get Instrument Interface Class file
$testTypeID = Input::get("test_type_id");
$testType = TestType::find($testTypeID);
$instrument = $testType->instruments->first();
// Fetch the results
return $instrument->fetchResult($testType);
}
public function run()
{
DB::table('testtypes')->delete();
TestType::create(array('description' => 'Ansiedad'));
TestType::create(array('description' => ''));
TestType::create(array('description' => 'Evaluación Mental'));
}
$report_config->landscape = true;
} else {
$report_config->landscape = false;
}
if ($_REQUEST['Clinical_Data'] == 'Y') {
$ClinicalData = 1;
} else {
$ClinicalData = 0;
}
$name = "../../logo_" . $lab_config_id . ".jpg";
# Header text
$align_header = array();
$align_header[0] = db_escape($_REQUEST['header']);
$align_header[1] = $_REQUEST['align'];
$report_config->headerText = db_escape(implode("??", $align_header));
$testType = TestType::getById($_REQUEST['t_type']);
$testName = $testType->name;
$title_text = "";
$count = 0;
foreach ($_REQUEST['title'] as $title_line) {
$count++;
$title_text .= $title_line;
if ($count < count($_REQUEST['title'])) {
$title_text .= "<br>";
}
}
move_uploaded_file($_FILES["file"]["tmp_name"], $name);
$report_config->titleText = db_escape($title_text);
# Footer text
$report_config->footerText = db_escape($_REQUEST['footer']);
$report_config->designation = db_escape($_REQUEST['designation']);
/**
* Display a test((un)grouped) and specimen((un)grouped) counts.
*
*/
public function countReports()
{
$date = date('Y-m-d');
$from = Input::get('start');
if (!$from) {
$from = date('Y-m-01');
}
$to = Input::get('end');
if (!$to) {
$to = $date;
}
$toPlusOne = date_add(new DateTime($to), date_interval_create_from_date_string('1 day'));
$counts = Input::get('counts');
// Begin grouped test counts
if ($counts == trans('messages.grouped-test-counts')) {
$testCategories = TestCategory::all();
$testTypes = TestType::all();
$ageRanges = array('0-5', '5-15', '15-120');
// Age ranges - will definitely change in configurations
$gender = array(Patient::MALE, Patient::FEMALE);
// Array for gender - male/female
$perAgeRange = array();
// array for counts data for each test type and age range
$perTestType = array();
// array for counts data per testype
if (strtotime($from) > strtotime($to) || strtotime($from) > strtotime($date) || strtotime($to) > strtotime($date)) {
Session::flash('message', trans('messages.check-date-range'));
}
foreach ($testTypes as $testType) {
$countAll = $testType->groupedTestCount(null, null, $from, $toPlusOne->format('Y-m-d H:i:s'));
$countMale = $testType->groupedTestCount([Patient::MALE], null, $from, $toPlusOne->format('Y-m-d H:i:s'));
$countFemale = $testType->groupedTestCount([Patient::FEMALE], null, $from, $toPlusOne->format('Y-m-d H:i:s'));
$perTestType[$testType->id] = ['countAll' => $countAll, 'countMale' => $countMale, 'countFemale' => $countFemale];
foreach ($ageRanges as $ageRange) {
$maleCount = $testType->groupedTestCount([Patient::MALE], $ageRange, $from, $toPlusOne->format('Y-m-d H:i:s'));
$femaleCount = $testType->groupedTestCount([Patient::FEMALE], $ageRange, $from, $toPlusOne->format('Y-m-d H:i:s'));
$perAgeRange[$testType->id][$ageRange] = ['male' => $maleCount, 'female' => $femaleCount];
}
}
return View::make('reports.counts.groupedTestCount')->with('testCategories', $testCategories)->with('ageRanges', $ageRanges)->with('gender', $gender)->with('perTestType', $perTestType)->with('perAgeRange', $perAgeRange)->withInput(Input::all());
} else {
if ($counts == trans('messages.ungrouped-specimen-counts')) {
if (strtotime($from) > strtotime($to) || strtotime($from) > strtotime($date) || strtotime($to) > strtotime($date)) {
Session::flash('message', trans('messages.check-date-range'));
}
$ungroupedSpecimen = array();
foreach (SpecimenType::all() as $specimenType) {
$rejected = $specimenType->countPerStatus([Specimen::REJECTED], $from, $toPlusOne->format('Y-m-d H:i:s'));
$accepted = $specimenType->countPerStatus([Specimen::ACCEPTED], $from, $toPlusOne->format('Y-m-d H:i:s'));
$total = $rejected + $accepted;
$ungroupedSpecimen[$specimenType->id] = ["total" => $total, "rejected" => $rejected, "accepted" => $accepted];
}
// $data = $data->groupBy('test_type_id')->paginate(Config::get('kblis.page-items'));
return View::make('reports.counts.ungroupedSpecimenCount')->with('ungroupedSpecimen', $ungroupedSpecimen)->withInput(Input::all());
} else {
if ($counts == trans('messages.grouped-specimen-counts')) {
$ageRanges = array('0-5', '5-15', '15-120');
// Age ranges - will definitely change in configurations
$gender = array(Patient::MALE, Patient::FEMALE);
// Array for gender - male/female
$perAgeRange = array();
// array for counts data for each test type and age range
$perSpecimenType = array();
// array for counts data per testype
if (strtotime($from) > strtotime($to) || strtotime($from) > strtotime($date) || strtotime($to) > strtotime($date)) {
Session::flash('message', trans('messages.check-date-range'));
}
$specimenTypes = SpecimenType::all();
foreach ($specimenTypes as $specimenType) {
$countAll = $specimenType->groupedSpecimenCount([Patient::MALE, Patient::FEMALE], null, $from, $toPlusOne->format('Y-m-d H:i:s'));
$countMale = $specimenType->groupedSpecimenCount([Patient::MALE], null, $from, $toPlusOne->format('Y-m-d H:i:s'));
$countFemale = $specimenType->groupedSpecimenCount([Patient::FEMALE], null, $from, $toPlusOne->format('Y-m-d H:i:s'));
$perSpecimenType[$specimenType->id] = ['countAll' => $countAll, 'countMale' => $countMale, 'countFemale' => $countFemale];
foreach ($ageRanges as $ageRange) {
$maleCount = $specimenType->groupedSpecimenCount([Patient::MALE], $ageRange, $from, $toPlusOne->format('Y-m-d H:i:s'));
$femaleCount = $specimenType->groupedSpecimenCount([Patient::FEMALE], $ageRange, $from, $toPlusOne->format('Y-m-d H:i:s'));
$perAgeRange[$specimenType->id][$ageRange] = ['male' => $maleCount, 'female' => $femaleCount];
}
}
return View::make('reports.counts.groupedSpecimenCount')->with('specimenTypes', $specimenTypes)->with('ageRanges', $ageRanges)->with('gender', $gender)->with('perSpecimenType', $perSpecimenType)->with('perAgeRange', $perAgeRange)->withInput(Input::all());
} else {
if (strtotime($from) > strtotime($to) || strtotime($from) > strtotime($date) || strtotime($to) > strtotime($date)) {
Session::flash('message', trans('messages.check-date-range'));
}
$ungroupedTests = array();
foreach (TestType::all() as $testType) {
$pending = $testType->countPerStatus([Test::PENDING, Test::STARTED], $from, $toPlusOne->format('Y-m-d H:i:s'));
$complete = $testType->countPerStatus([Test::COMPLETED, Test::VERIFIED], $from, $toPlusOne->format('Y-m-d H:i:s'));
$ungroupedTests[$testType->id] = ["complete" => $complete, "pending" => $pending];
}
// $data = $data->groupBy('test_type_id')->paginate(Config::get('kblis.page-items'));
return View::make('reports.counts.ungroupedTestCount')->with('ungroupedTests', $ungroupedTests)->withInput(Input::all());
}
}
}
}
$female_total = array();
$cross_gender_total = array();
$age_total = array();
$age_total1 = array();
$age_total2 = array();
$curr_male_total = 0;
$curr_female_total = 0;
$curr_cross_gender_total = 0;
$age_total;
$age_total1;
$age_total2;
foreach ($site_list as $labConfigId) {
$lab_config = get_lab_config_by_id($labConfigId);
$testTypeId = $testIds[$labConfigId];
$saved_db = DbUtil::switchToLabConfig($labConfigId);
$testType = TestType::getById($testTypeId);
StatsLib::setDiseaseSetList($lab_config, $testType, $date_from, $date_to);
DbUtil::switchRestore($saved_db);
$is_range_options = true;
if (strpos($measure->range, "/") === false) {
$is_range_options = false;
}
$range_values = array();
if ($is_range_options) {
# Alphanumeric options
$range_values1 = explode("/", $measure->range);
$range_values = str_replace("#", "/", $range_values1);
} else {
# Numeric ranges: Fetch ranges configured for this test-type/measure from DB
$range_values = $disease_report->getMeasureGroupAsList();
}
function clean_range($test, $report_config, $patient)
{
$test_type = TestType::getById($test->testTypeId);
$measure_list = $test_type->getMeasures();
$range_output = '';
$loop_count = 0;
foreach ($measure_list as $measure) {
$type = $measure->getRangeType();
if ($type == Measure::$RANGE_NUMERIC) {
$range_list_array = $measure->getRangeString($patient);
$lower = $range_list_array[0];
$upper = $range_list_array[1];
$unit = $measure->unit;
if (stripos($unit, ",") != false) {
$units = explode(",", $unit);
$lower_parts = explode(".", $lower);
$upper_parts = explode(".", $upper);
if ($lower_parts[0] != 0) {
$range_output .= $lower_parts[0];
$range_output .= $units[0];
}
if ($lower_parts[1] != 0) {
$range_output .= $lower_parts[1];
$range_output .= $units[1];
}
$range_output .= "-";
if ($upper_parts[0] != 0) {
$range_output .= $upper_parts[0];
$range_output .= $units[0];
}
if ($upper_parts[1] != 0) {
$range_output .= $upper_parts[1];
$range_output .= $units[1];
}
} else {
if (stripos($unit, ":") != false) {
$units = explode(":", $unit);
$range_output .= $lower;
$range_output .= $units[0] . "-";
$range_output .= $upper;
$range_output .= $units[0];
$range_output .= " " . $units[1];
} else {
$range_output .= $lower . "-" . $upper;
$range_output .= " " . $measure->unit;
}
}
} else {
if ($measure->unit == "") {
$range_output .= "";
}
}
if ($loop_count < count($measure_list) - 1) {
$range_output .= ", ";
}
$loop_count++;
}
// put ranges into an array
$range_output_array = explode(", ", $range_output);
return $range_output_array;
}
/**
* Given the test name we return the test type ID
*
* @param $testname the name of the test
*/
public static function getTestTypeIdByTestName($testName)
{
try {
$testName = trim($testName);
$testTypeId = TestType::where('name', 'like', $testName)->orderBy('name')->firstOrFail();
return $testTypeId->id;
} catch (ModelNotFoundException $e) {
Log::error("The test type ` {$testName} ` does not exist: " . $e->getMessage());
//TODO: send email?
return null;
}
}
$i++;
}
DbUtil::switchRestore($saved_db);
return $retval;
}
public static function getRangeInfectionStats($lab_config, $date_from, $date_to)
{
$test_type_list = get_range_value_test_types($lab_config);
# For each test type, fetch all measures
# For each measure, create distribution based on range
foreach ($test_type_list as $test_type_id) {
# Collect measure(s) information
$measure_list = get_test_type_measures($test_type_id);
$measure_meta_list = array();
foreach ($measure_list as $measure_id) {
$measure = get_measure_by_id($measure_id);
$measure_meta = new MeasureMeta();
$measure_meta->name = $measure->getName();
$measure_meta->countParts = array();
$range = $measure->range;
if (strpos($range, ":") === false) {
# Discrete value range
$range_options = explode("#", $range);
$measure_meta->rangeType = MeasureMeta::$DISCRETE;
$measure_meta->rangeValues = $range_options;
} else {
# Continuous value range
$range_bounds = explode(":", $range);
$measure_meta->rangeType = MeasureMeta::$CONTINUOUS;
$measure_meta->rangeValues = $range_bounds;
}
$measure_meta_list[] = $measure_meta;
}
# Calculate stats
$query_string = "SELECT COUNT(*) AS count_val FROM test t, specimen s " . "WHERE t.test_type_id={$test_type_id} " . "AND t.specimen_id=s.specimen_id " . "AND ( s.date_collected BETWEEN '{$date_from}' AND '{$date_to}' ) " . "AND t.result <> ''";
$record = query_associative_one($query_string);
$count_all = $record['count_val'];
# Fetch result values
$query_string = "SELECT t.result FROM test t, specimen s " . "WHERE t.test_type_id={$test_type_id} " . "AND t.specimen_id=s.specimen_id " . "AND ( s.date_collected BETWEEN '{$date_from}' AND '{$date_to}' ) " . "AND t.result <> ''";
$resultset = query_associative_all($query_string, $row_count);
foreach ($resultset as $record) {
$result_string = substr($record['result'], 0, -1);
$result_list = explode(",", $result_string);
for ($i = 0; $i < count($result_list); $i++) {
$measure_meta = $measure_meta_list[$i];
if ($measure_meta->rangeType == MeasureMeta::$CONTINUOUS) {
$range_bounds = $measure_meta->rangeValues;
$interval = $range_bounds[1] - $range_bounds[0];
$base = $interval / 10;
$offset = $result_list[$i] - $range_bounds[0];
$bucket = $offset / $base;
echo $bucket;
break;
/**
* Save a new Test.
*
* @return Response
*/
public function saveNewTest()
{
//Create New Test
$rules = array('visit_type' => 'required', 'physician' => 'required', 'testtypes' => 'required');
$validator = Validator::make(Input::all(), $rules);
// process the login
if ($validator->fails()) {
return Redirect::route('test.create', array(Input::get('patient_id')))->withInput()->withErrors($validator);
} else {
$visitType = ['Out-patient', 'In-patient'];
$activeTest = array();
/*
* - Create a visit
* - Fields required: visit_type, patient_id
*/
$visit = new Visit();
$visit->patient_id = Input::get('patient_id');
$visit->visit_type = $visitType[Input::get('visit_type')];
$visit->save();
/*
* - Create tests requested
* - Fields required: visit_id, test_type_id, specimen_id, test_status_id, created_by, requested_by
*/
$testTypes = Input::get('testtypes');
if (is_array($testTypes)) {
foreach ($testTypes as $value) {
$testTypeID = (int) $value;
// Create Specimen - specimen_type_id, accepted_by, referred_from, referred_to
$specimen = new Specimen();
$specimen->specimen_type_id = TestType::find($testTypeID)->specimenTypes->lists('id')[0];
$specimen->accepted_by = Auth::user()->id;
$specimen->save();
$test = new Test();
$test->visit_id = $visit->id;
$test->test_type_id = $testTypeID;
$test->specimen_id = $specimen->id;
$test->test_status_id = Test::PENDING;
$test->created_by = Auth::user()->id;
$test->requested_by = Input::get('physician');
$test->save();
$activeTest[] = $test->id;
}
}
$url = Session::get('SOURCE_URL');
return Redirect::to($url)->with('message', 'messages.success-creating-test')->with('activeTest', $activeTest);
}
}
<?php
#
# Returns batch results entry form for a given test type
# Called via ajax from results_entry.php
#
include "../includes/db_lib.php";
include "../includes/page_elems.php";
LangUtil::setPageId("results_entry");
$page_elems = new PageElems();
$test_type_id = $_REQUEST['t_type'];
$date_to = $_REQUEST['date_to'];
$date_from = $_REQUEST['date_from'];
$date_from_array = explode("-", $date_from);
$date_to_array = explode("-", $date_to);
$test_type = TestType::getById($test_type_id);
$lab_config = LabConfig::getById($_SESSION['lab_config_id']);
$worksheet_config = $lab_config->getWorkSheetConfig($test_type_id);
# Fetch all measures for this test type
$measure_list = $test_type->getMeasures();
# Create a table with specimen ID field and these measures
# Fetch currently pending tests for this test type
$pending_tests = get_pending_tests_by_type_date($test_type_id, $date_from, $date_to);
if (count($pending_tests) == 0 || $pending_tests == null) {
?>
<div class='sidetip_nopos'>
<?php
echo get_test_name_by_id($test_type_id) . " " . LangUtil::$pageTerms['MSG_PENDINGNOTFOUND'];
?>
.
</div>
function get_records_to_print($lab_config, $patient_id)
{
global $date_from, $date_to, $LIS_DOCTOR;
$retval = array();
if (isset($_REQUEST['ip']) && $_REQUEST['ip'] == 0) {
# Do not include pending tests
$labsection = 0;
if (isset($_REQUEST['labsection'])) {
$labsection = $_REQUEST['labsection'];
}
if ($labsection == 0) {
$query_string = "SELECT t.* FROM test t, specimen sp " . "WHERE t.result <> '' " . "AND t.specimen_id=sp.specimen_id " . "AND sp.patient_id={$patient_id} ";
} else {
$query_string = "SELECT distinct t.* FROM test t, specimen sp, test_type tt, test_category tc " . "WHERE t.specimen_id=sp.specimen_id " . "AND t.result <> '' " . "AND sp.patient_id={$patient_id} " . "AND t.test_type_id = tt.test_type_id " . "AND tt.test_type_id in (select test_type_id from test_type where test_category_id = {$labsection})";
}
#Taking care of removal tests cases
$query_string .= " AND t.test_id not in (select distinct r_id from removal_record where `status` = 1) ";
if (isset($_REQUEST['yf'])) {
$query_string .= "AND (sp.date_collected BETWEEN '{$date_from}' AND '{$date_to}') ";
}
$query_string .= "ORDER BY sp.date_collected DESC";
} else {
# Include pending tests
$labsection = 0;
if (isset($_REQUEST['labsection'])) {
$labsection = $_REQUEST['labsection'];
}
if ($labsection == 0) {
$query_string = "SELECT t.* FROM test t, specimen sp " . "WHERE t.specimen_id=sp.specimen_id " . "AND sp.patient_id={$patient_id} ";
} else {
$query_string = "SELECT distinct t.* FROM test t, specimen sp, test_type tt, test_category tc " . "WHERE t.specimen_id=sp.specimen_id " . "AND sp.patient_id={$patient_id} " . "AND t.test_type_id = tt.test_type_id " . "AND tt.test_type_id in (select test_type_id from test_type where test_category_id = {$labsection})";
}
#Taking care of removal tests cases
$query_string .= " AND t.test_id not in (select distinct r_id from removal_record where `status` = 1) ";
if (isset($_REQUEST['yf'])) {
$query_string .= "AND (sp.date_collected BETWEEN '{$date_from}' AND '{$date_to}') ";
}
$query_string .= "ORDER BY sp.date_collected DESC";
}
$resultset = query_associative_all($query_string, $row_count);
if (count($resultset) == 0 || $resultset == null) {
return $retval;
}
foreach ($resultset as $record) {
$test = Test::getObject($record);
if ($_SESSION['user_level'] == $LIS_DOCTOR) {
if ($test->verifiedBy == 0) {
continue;
}
}
$hide_patient_name = TestType::toHidePatientName($test->testTypeId);
if ($hide_patient_name == 1) {
$hidePatientName = 1;
}
$specimen = get_specimen_by_id($test->specimenId);
$retval[] = array($test, $specimen, $hide_patient_name);
}
return $retval;
}
/**
* Display data after applying the filters on the report uses patient ID
*
* @return Response
*/
public function cd4()
{
// check if accredited
$accredited = array();
$from = Input::get('start');
$to = Input::get('end');
$pending = Input::get('pending');
$date = date('Y-m-d');
$error = '';
// Check dates
if (!$from) {
$from = date('Y-m-01');
}
if (!$to) {
$to = $date;
}
// Get columns
$columns = array(Lang::choice('messages.cd4-less', 1), Lang::choice('messages.cd4-greater', 1));
$rows = array(Lang::choice('messages.baseline', 1), Lang::choice('messages.follow-up', 1));
// Get test
$test = TestType::find(TestType::getTestTypeIdByTestName('cd4'));
$counts = array();
foreach ($columns as $column) {
foreach ($rows as $row) {
if ($test != null) {
$counts[$column][$row] = $test->cd4($from, $to, $column, $row);
} else {
$counts[$column][$row] = 0;
}
}
}
if (Input::has('word')) {
$date = date("Ymdhi");
$fileName = "cd4_report_" . $date . ".doc";
$headers = array("Content-type" => "text/html", "Content-Disposition" => "attachment;Filename=" . $fileName);
$content = View::make('reports.cd4.export')->with('columns', $columns)->with('rows', $rows)->with('accredited', $accredited)->with('test', $test)->with('counts', $counts)->withInput(Input::all());
return Response::make($content, 200, $headers);
} else {
if (Input::has('excel')) {
$date = date("Ymdhi");
$fileName = "cd4_report_" . $date . ".xls";
$headers = array("Content-type" => "text/html", "Content-Disposition" => "attachment;Filename=" . $fileName);
$content = View::make('reports.cd4.export')->with('columns', $columns)->with('rows', $rows)->with('accredited', $accredited)->with('test', $test)->with('counts', $counts)->withInput(Input::all());
return Response::make($content, 200, $headers);
} else {
return View::make('reports.cd4.index')->with('columns', $columns)->with('rows', $rows)->with('accredited', $accredited)->with('test', $test)->with('counts', $counts)->withInput(Input::all());
}
}
}
public function getCustomWorksheetSummary($worksheet)
{
?>
<table class='hor-minimalist-b' style='width:auto;'>
<tbody>
<tr valign='top'>
<td><?php echo LangUtil::$generalTerms['NAME']; ?></td>
<td><?php echo $worksheet->name; ?></td>
</tr>
<tr valign='top'>
<td>Header</td>
<td><?php echo $worksheet->headerText; ?></td>
</tr>
<tr valign='top'>
<td>Title</td>
<td><?php echo $worksheet->titleText; ?></td>
</tr>
<tr valign='top'>
<td>Footer</td>
<td><?php echo $worksheet->footerText; ?></td>
</tr>
<tr valign='top'>
<td><?php echo LangUtil::$pageTerms['MARGINS']; ?> (%)</td>
<td>
<?php echo LangUtil::$pageTerms['TOP'];?>
<?php echo $worksheet->margins[ReportConfig::$TOP]; ?>
<?php echo LangUtil::$pageTerms['BOTTOM'];?>
<?php echo $worksheet->margins[ReportConfig::$BOTTOM]; ?>
<?php echo LangUtil::$pageTerms['LEFT'];?>
<?php echo $worksheet->margins[ReportConfig::$LEFT]; ?>
<?php echo LangUtil::$pageTerms['RIGHT'];?>
<?php echo $worksheet->margins[ReportConfig::$RIGHT]; ?>
</td>
</tr>
<tr valign='top'>
<td><?php echo LangUtil::$generalTerms['PATIENT_ID']; ?></td>
<td>
<?php
if($worksheet->idFields[CustomWorksheet::$OFFSET_PID] == 1)
{
echo LangUtil::$generalTerms['YES'];
}
else
{
echo LangUtil::$generalTerms['NO'];
}
?>
</td>
</tr>
<tr valign='top'>
<td><?php echo LangUtil::$generalTerms['PATIENT_DAILYNUM']; ?></td>
<td>
<?php
if($worksheet->idFields[CustomWorksheet::$OFFSET_DNUM] == 1)
{
echo LangUtil::$generalTerms['YES'];
}
else
{
echo LangUtil::$generalTerms['NO'];
}
?>
</td>
</tr>
<tr valign='top'>
<td><?php echo LangUtil::$generalTerms['ADDL_ID']; ?></td>
<td>
<?php
if($worksheet->idFields[CustomWorksheet::$OFFSET_ADDLID] == 1)
{
echo LangUtil::$generalTerms['YES'];
}
else
{
echo LangUtil::$generalTerms['NO'];
}
?>
</td>
</tr>
<tr valign='top'>
<td><?php echo LangUtil::$pageTerms['CUSTOMFIELDS']; ?></td>
<td>
<span id='uf_list_box'>
<?php
foreach($worksheet->userFields as $field_entry)
{
$field_id = $field_entry[0];
$field_name = $field_entry[1];
$field_width = $field_entry[2];
echo $field_name;
echo " (";
echo LangUtil::$pageTerms['COLUMN_WIDTH'].": ";
echo $field_width;
echo ")";
echo "<br>";
}
?>
</span>
</td>
</tr>
</table>
<br>
<div class='smaller_font' style='width:auto;'>
<?php
$test_type_list = $worksheet->testTypes;
foreach($test_type_list as $test_type_id)
{
$test_type = TestType::getById($test_type_id);
$measure_list = $test_type->getMeasures();
?>
<div>
<b><?php echo $test_type->getName(); ?></b>
<br>
<div id='ttype_<?php echo $test_type->testTypeId; ?>_mlist' style='position:relative; margin-left:15px;'>
<table class='hor-minimalist-b'>
<thead>
<tr>
<th style='width:200px;'><?php echo LangUtil::$generalTerms['MEASURES']; ?></th>
<th><?php echo LangUtil::$pageTerms['COLUMN_WIDTH']; ?> (%)</th>
</tr>
<?php
foreach($measure_list as $measure)
{
$measure_id = $measure->measureId;
?>
<tr>
<td>
<?php echo $measure->getName(); ?>
</td>
<td>
<?php echo $worksheet->columnWidths[$test_type_id][$measure_id]; ?>
</td>
</tr>
<?php
}
?>
</thead>
<tbody>
</tbody>
</table>
</div>
</div>
<br>
<?php
}
?>
</div>
</div>
<?php
}
/**
* Function for processing the requests we receive from the external system
* and putting the data into our system.
*
* @var array lab_requests
*/
public function process($labRequest)
{
//First: Check if patient exists, if true dont save again
$patient = Patient::where('external_patient_number', '=', $labRequest->patient->id)->get();
if (!$patient->first()) {
$patient = new Patient();
$patient->external_patient_number = $labRequest->patient->id;
$patient->patient_number = $labRequest->patient->id;
$patient->name = $labRequest->patient->fullName;
$gender = array('Male' => Patient::MALE, 'Female' => Patient::FEMALE);
$patient->gender = $gender[$labRequest->patient->gender];
$patient->dob = $labRequest->patient->dateOfBirth;
$patient->address = $labRequest->address->address;
$patient->phone_number = $labRequest->address->phoneNumber;
$patient->created_by = User::EXTERNAL_SYSTEM_USER;
$patient->save();
} else {
$patient = $patient->first();
}
//We check if the test exists in our system if not we just save the request in stagingTable
if ($labRequest->parentLabNo == '0') {
$testTypeId = TestType::getTestTypeIdByTestName($labRequest->investigation);
} else {
$testTypeId = null;
}
if (is_null($testTypeId) && $labRequest->parentLabNo == '0') {
$this->saveToExternalDump($labRequest, ExternalDump::TEST_NOT_FOUND);
return;
}
//Check if visit exists, if true dont save again
$visitType = array('ip' => 'In-patient', 'op' => 'Out-patient');
//Should be a constant
$visit = Visit::where('visit_number', '=', $labRequest->patientVisitNumber)->where('visit_type', '=', $visitType[$labRequest->orderStage])->get();
if (!$visit->first()) {
$visit = new Visit();
$visit->patient_id = $patient->id;
$visit->visit_type = $visitType[$labRequest->orderStage];
$visit->visit_number = $labRequest->patientVisitNumber;
// We'll save Visit in a transaction a little bit below
} else {
$visit = $visit->first();
if (strcmp($visitType[$labRequest->orderStage], $visit->visit_type) != 0) {
$visit = new Visit();
$visit->patient_id = $patient->id;
$visit->visit_type = $visitType[$labRequest->orderStage];
$visit->visit_number = $labRequest->patientVisitNumber;
}
}
$test = null;
//Check if parentLabNO is 0 thus its the main test and not a measure
if ($labRequest->parentLabNo == '0') {
//Check via the labno, if this is a duplicate request and we already saved the test
$test = Test::where('external_id', '=', $labRequest->labNo)->get();
if (!$test->first()) {
//Specimen
$specimen = new Specimen();
$specimen->specimen_type_id = TestType::find($testTypeId)->specimenTypes->lists('id')[0];
// We'll save the Specimen in a transaction a little bit below
$test = new Test();
$test->test_type_id = $testTypeId;
$test->test_status_id = Test::NOT_RECEIVED;
$test->created_by = User::EXTERNAL_SYSTEM_USER;
//Created by external system 0
$test->requested_by = $labRequest->requestingClinician;
$test->external_id = $labRequest->labNo;
DB::transaction(function () use($visit, $specimen, $test) {
$visit->save();
$specimen->save();
$test->visit_id = $visit->id;
$test->specimen_id = $specimen->id;
$test->save();
});
$this->saveToExternalDump($labRequest, $test->id);
return;
}
}
$this->saveToExternalDump($labRequest, null);
}
function get_cumul_stats($lab_config_id, $test_type_id, $date_from, $date_to)
{
$lab_config = LabConfig::getById($lab_config_id);
$test_type = TestType::getById($test_type_id);
$measure_list = $test_type->getMeasures();
$site_settings = DiseaseReport::getByKeys($lab_config->id, 0, 0);
$age_group_list = $site_settings->getAgeGroupAsList();
?>
<table class='pretty_print' style='border-collapse: collapse;'>
<thead>
<tr valign='top'>
<th><?php
echo LangUtil::$generalTerms['TEST'];
?>
</th>
<th ><?php
echo LangUtil::$generalTerms['RESULTS'];
?>
</th>
<?php
if ($site_settings->groupByGender == 1) {
echo "<th >" . LangUtil::$generalTerms['GENDER'] . "</th>";
}
if ($site_settings->groupByAge == 1) {
echo "<th >" . LangUtil::$pageTerms['RANGE_AGE'] . "</th>";
for ($i = 1; $i < count($age_group_list); $i++) {
echo "<th >" . LangUtil::$pageTerms['RANGE_AGE'] . "</th>";
}
}
if ($site_settings->groupByGender == 1) {
echo "<th ></th>";
}
?>
<th ><?php
echo LangUtil::$pageTerms['TOTAL'];
?>
</th>
<th ><?php
echo LangUtil::$pageTerms['TOTAL_TESTS'];
?>
</th>
</tr>
<tr>
<th ></th>
<th ></th>
<?php
if ($site_settings->groupByGender == 1) {
echo "<th ></th>";
}
if ($site_settings->groupByAge == 1) {
foreach ($age_group_list as $age_slot) {
echo "<th>{$age_slot['0']}";
if (trim($age_slot[1]) == "+") {
echo "+";
} else {
echo " - {$age_slot['1']}";
}
echo "</th>";
}
}
if ($site_settings->groupByGender == 1) {
echo "<th >" . LangUtil::$pageTerms['TOTAL_MF'] . "</th>";
}
echo "<th ></th>";
echo "<th ></th>";
?>
<tr>
</thead>
<tbody>
<?php
StatsLib::setDiseaseSetList($lab_config, $test_type, $date_from, $date_to);
$measures = $test_type->getMeasures();
foreach ($measures as $measure) {
$male_total = array();
$female_total = array();
$cross_gender_total = array();
$curr_male_total = 0;
$curr_female_total = 0;
$curr_cross_gender_total = 0;
$disease_report = DiseaseReport::getByKeys($lab_config->id, $test_type->testTypeId, $measure->measureId);
if ($disease_report == null) {
# TODO: Check for error control
# Alphanumeric values. Hence entry not found.
//continue;
}
$is_range_options = true;
if (strpos($measure->range, "/") === false) {
$is_range_options = false;
}
$range_values = array();
if ($is_range_options) {
# Alphanumeric options
$range_values = explode("/", $measure->range);
} else {
# Numeric ranges: Fetch ranges configured for this test-type/measure from DB
$range_values = $disease_report->getMeasureGroupAsList();
}
?>
<tr valign='top'>
<td><?php
echo $measure->getName();
?>
</td>
<td>
<?php
foreach ($range_values as $range_value) {
if ($is_range_options) {
echo "{$range_value}<br>";
} else {
echo "{$range_value['0']}-{$range_value['1']}<br>";
}
if ($site_settings->groupByGender == 1) {
echo "<br>";
}
}
?>
</td>
<?php
if ($site_settings->groupByGender == 1) {
# Group by gender set to true
echo "<td>";
for ($i = 1; $i <= count($range_values); $i++) {
echo "M<br>F<br>";
}
}
if ($site_settings->groupByAge == 1) {
# Group by age set to true: Fetch age slots from DB
$age_slot_list = $site_settings->getAgeGroupAsList();
foreach ($age_slot_list as $age_slot) {
echo "<td>";
$range_value_count = 0;
foreach ($range_values as $range_value) {
$range_value_count++;
if (!isset($male_total[$range_value_count])) {
$male_total[$range_value_count] = 0;
$female_total[$range_value_count] = 0;
$cross_gender_total[$range_value_count] = 0;
}
$curr_male_total = 0;
$curr_female_total = 0;
$curr_cross_gender_total = 0;
$range_type = DiseaseSetFilter::$CONTINUOUS;
if ($is_range_options == true) {
$range_type = DiseaseSetFilter::$DISCRETE;
}
if ($site_settings->groupByGender == 0) {
# No genderwise count required.
# Create filter
$disease_filter = new DiseaseSetFilter();
$disease_filter->patientAgeRange = $age_slot;
$disease_filter->patientGender = null;
$disease_filter->measureId = $measure->measureId;
$disease_filter->rangeType = $range_type;
$disease_filter->rangeValues = $range_value;
$curr_total = StatsLib::getDiseaseFilterCount($disease_filter);
$curr_cross_gender_total += $curr_total;
echo "{$curr_total}<br>";
} else {
# Genderwise count required.
# Create filter
$disease_filter = new DiseaseSetFilter();
$disease_filter->patientAgeRange = $age_slot;
$disease_filter->measureId = $measure->measureId;
$disease_filter->rangeType = $range_type;
$disease_filter->rangeValues = $range_value;
## Count for males.
$disease_filter->patientGender = 'M';
$curr_total1 = StatsLib::getDiseaseFilterCount($disease_filter);
$curr_male_total += $curr_total1;
## Count for females.
$disease_filter->patientGender = 'F';
$curr_total2 = StatsLib::getDiseaseFilterCount($disease_filter);
$curr_female_total += $curr_total2;
echo "{$curr_total1}<br>{$curr_total2}<br>";
}
# Build assoc list to track genderwise totals
$male_total[$range_value_count] += $curr_male_total;
$female_total[$range_value_count] += $curr_female_total;
$cross_gender_total[$range_value_count] += $curr_cross_gender_total;
}
echo "</td>";
}
} else {
# Age slots not configured: Show cumulative count for all age values
$range_value_count = 0;
foreach ($range_values as $range_value) {
$range_value_count++;
if (!isset($male_total[$range_value_count])) {
$male_total[$range_value_count] = 0;
$female_total[$range_value_count] = 0;
$cross_gender_total[$range_value_count] = 0;
}
$curr_male_total = 0;
$curr_female_total = 0;
$curr_cross_gender_total = 0;
$range_type = DiseaseSetFilter::$CONTINUOUS;
if ($is_range_options == true) {
$range_type = DiseaseSetFilter::$DISCRETE;
}
if ($site_settings->groupByGender == 0) {
# No genderwise count required.
# Create filter
$disease_filter = new DiseaseSetFilter();
$disease_filter->patientAgeRange = array(0, 200);
$disease_filter->patientGender = null;
$disease_filter->measureId = $measure->measureId;
$disease_filter->rangeType = $range_type;
$disease_filter->rangeValues = $range_value;
$curr_total = StatsLib::getDiseaseFilterCount($disease_filter);
$curr_cross_gender_total += $curr_total;
} else {
# Genderwise count required.
# Create filter
$disease_filter = new DiseaseSetFilter();
$disease_filter->patientAgeRange = array(0, 200);
$disease_filter->measureId = $measure->measureId;
$disease_filter->rangeType = $range_type;
$disease_filter->rangeValues = $range_value;
## Count for males.
$disease_filter->patientGender = 'M';
$curr_total1 = StatsLib::getDiseaseFilterCount($disease_filter);
$curr_male_total += $curr_total1;
## Count for females.
$disease_filter->patientGender = 'F';
$curr_total2 = StatsLib::getDiseaseFilterCount($disease_filter);
$curr_female_total += $curr_total2;
}
# Build assoc list to track genderwise totals
$male_total[$range_value_count] += $curr_male_total;
$female_total[$range_value_count] += $curr_female_total;
$cross_gender_total[$range_value_count] += $curr_cross_gender_total;
}
}
if ($site_settings->groupByGender == 1) {
echo "<td>";
for ($i = 1; $i <= count($range_values); $i++) {
$this_male_total = $male_total[$i];
$this_female_total = $female_total[$i];
echo "{$this_male_total}<br>{$this_female_total}<br>";
$this_cross_gender_total = $this_male_total + $this_female_total;
}
echo "</td>";
}
echo "<td>";
for ($i = 1; $i <= count($range_values); $i++) {
if ($site_settings->groupByGender == 1) {
echo $male_total[$i] + $female_total[$i];
echo "<br><br>";
} else {
echo $cross_gender_total[$i];
echo "<br>";
}
}
echo "</td>";
# Grand total:
# TODO: Check the following function for off-by-one error
//$disease_total = StatsLib::getDiseaseTotal($lab_config, $test, $date_from, $date_to);
//echo "<td >$disease_total</td>";
echo "<td>";
if ($site_settings->groupByGender == 1) {
echo array_sum($male_total) + array_sum($female_total);
} else {
echo array_sum($cross_gender_total);
}
echo "</td>";
?>
</tr>
<?php
}
?>
</tbody>
</table>
<?php
}
