/**
* Documentation for this function.
*/
function onAddH()
{
$req = $_REQUEST;
if ($req['cmd'] == 'Cancel') {
pageReturn();
return;
}
// Otherwise, moving forward:
if (isset($req['modelID']) && isset($req['method']) && isset($req['blength'])) {
unset($_SESSION['bgjob']);
// Clean up any old data
$_SESSION['bgjob']['modelID'] = $req['modelID'];
$_SESSION['bgjob']['makeFlipkin'] = $req['makeFlipkin'];
$_SESSION['bgjob']['nqh_regularize'] = $req['nqh_regularize'];
$_SESSION['bgjob']['reduce_blength'] = $req['blength'];
$_SESSION['reduce_blength'] = $_SESSION['bgjob']['reduce_blength'];
if ($req['method'] == 'build') {
if ($_SESSION['bgjob']['reduce_blength'] == 'ecloud') {
mpLog("reduce-build:User ran default Reduce -build job; flipkins=" . $_REQUEST['makeFlipkin']);
} else {
mpLog("reduce-build:User ran default Reduce -build -nuclear job; flipkins=" . $_REQUEST['makeFlipkin']);
}
// launch background job
pageGoto("job_progress.php");
launchBackground(MP_BASE_DIR . "/jobs/reduce-build.php", "reduce_choose.php", 5);
} elseif ($req['method'] == 'nobuild') {
if ($_SESSION['bgjob']['reduce_blength'] == 'ecloud') {
mpLog("reduce-nobuild:User ran Reduce with -nobuild9999 flag");
} else {
mpLog("reduce-nobuild:User ran Reduce with -nobuild9999 -nuclear flag");
}
// launch background job
pageGoto("job_progress.php");
launchBackground(MP_BASE_DIR . "/jobs/reduce-nobuild.php", "generic_done.php", 5);
}
} else {
$context = getContext();
if (isset($req['modelID'])) {
$context['modelID'] = $req['modelID'];
}
if (isset($req['method'])) {
$context['method'] = $req['method'];
}
if (isset($req['blength'])) {
$context['blength'] = $req['blength'];
}
setContext($context);
}
}
function onFolderClose($arg)
{
$context = getContext();
$context['isExpanded'][$arg] = false;
setContext($context);
}
/**
* Launches Prekin when the user submits the form.
*/
function onRunPrekin()
{
$req = $_REQUEST;
if ($req['cmd'] == 'Cancel') {
pageReturn();
return;
}
// Otherwise, moving forward:
if (isset($req['modelID']) && isset($req['scriptName'])) {
$_SESSION['lastUsedModelID'] = $req['modelID'];
// this is now the current model
unset($_SESSION['bgjob']);
// Clean up any old data
$_SESSION['bgjob'] = $req;
mpLog("makekin:Creating simple kinemages from built-in Prekin script '{$req['scriptName']}'");
// launch background job
pageGoto("job_progress.php");
launchBackground(MP_BASE_DIR . "/jobs/makekin.php", "generic_done.php", 3);
} else {
$context = getContext();
if (isset($req['modelID'])) {
$context['modelID'] = $req['modelID'];
}
if (isset($req['scriptName'])) {
$context['scriptName'] = $req['scriptName'];
}
setContext($context);
}
}
/**
* This function calls the notebook editor so the user can modify the notebook
* entry. Control is transfered to another page, namely, notebook_edit.php.
* When that page is done, it will call pageReturn(), and control will return
* to this class--display() will be called again to show the entry.
*
* This function gets called when the user clicks the link made by display()
*
* $arg contains the entry number of the notebook entry to edit. It was specified
* by the call to makeEventURL() that occurs in display(), above.
* $req is filled in with the usually info from the form submission, but
* we don't need to use it for anything here.
*/
function onPdbConvert()
{
$req = $_REQUEST;
if ($req['cmd'] == 'Cancel') {
pageReturn();
return;
}
if (isset($req['modelID'])) {
$_SESSION['lastUsedModelID'] = $req['modelID'];
// this is now the current model
unset($_SESSION['bgjob']);
// Clean up any old data
$_SESSION['bgjob'] = $req;
mpLog("convertPdb:Converted '{$req['modelID']}' to PDBv2.3");
// launch background job
pageGoto("job_progress.php");
launchBackground(MP_BASE_DIR . "/jobs/pdb_convert.php", "generic_done.php", 3);
} else {
$context = getContext();
if (isset($req['modelID'])) {
$context['modelID'] = $req['modelID'];
}
//if(isset($req['scriptName'])) $context['scriptName'] = $req['scriptName'];
setContext($context);
}
}
/**
* Documentation for this function.
*/
function onShowAllNQH($arg)
{
//$ctx = getContext();
//$ctx['showAllNQH'] = $arg;
//setContext($ctx);
setContext('showAllNQH', $arg);
}
/**
* This function calls the notebook editor so the user can modify the notebook
* entry. Control is transfered to another page, namely, notebook_edit.php.
* When that page is done, it will call pageReturn(), and control will return
* to this class--display() will be called again to show the entry.
*
* This function gets called when the user clicks the link made by display()
*
* $arg contains the entry number of the notebook entry to edit. It was specified
* by the call to makeEventURL() that occurs in display(), above.
* $req is filled in with the usually info from the form submission, but
* we don't need to use it for anything here.
*/
function onFillGaps()
{
$req = $_REQUEST;
if ($req['cmd'] == 'Cancel') {
pageReturn();
return;
}
if (isset($req['modelID'])) {
$_SESSION['lastUsedModelID'] = $req['modelID'];
// this is now the current model
unset($_SESSION['bgjob']);
// Clean up any old data
$_SESSION['bgjob'] = $req;
mpLog("makekin:Filling fragments in: '{$req['modelID']}'");
// launch background job
pageGoto("job_progress.php");
launchBackground(MP_BASE_DIR . "/jobs/fillfragments.php", "generic_done.php", 3);
} else {
$context = getContext();
if (isset($req['modelID'])) {
$context['modelID'] = $req['modelID'];
}
//if(isset($req['scriptName'])) $context['scriptName'] = $req['scriptName'];
setContext($context);
}
}
/**
* Documentation for this function.
*/
function onChooseResidues()
{
$req = $_REQUEST;
if ($req['cmd'] == 'Cancel') {
pageReturn();
return;
}
// Otherwise, moving forward:
if (isset($req['modelID']) && isset($req['map'])) {
$ctx['modelID'] = $req['modelID'];
$ctx['map'] = $req['map'];
pageGoto("sswing_setup2.php", $ctx);
} else {
$ctx = getContext();
if (isset($req['modelID'])) {
$ctx['modelID'] = $req['modelID'];
}
if (isset($req['map'])) {
$ctx['map'] = $req['map'];
}
setContext($ctx);
}
}
/**
* Documentation for this function.
*/
function onAddH()
{
$req = $_REQUEST;
if ($req['cmd'] == 'Cancel') {
pageReturn();
return;
}
// Otherwise, moving forward:
if (isset($req['ensID']) && isset($req['method']) && isset($req['blength'])) {
unset($_SESSION['bgjob']);
// Clean up any old data
$_SESSION['bgjob']['ensID'] = $req['ensID'];
$_SESSION['bgjob']['method'] = $req['method'];
$_SESSION['bgjob']['reduce_blength'] = $req['blength'];
mpLog("reduce-ensemble:User ran default Reduce -{$req['method']} job on an ensemble");
// launch background job
pageGoto("job_progress.php");
launchBackground(MP_BASE_DIR . "/jobs/ens_reduce.php", "generic_done.php", 5);
} else {
$context = getContext();
if (isset($req['ensID'])) {
$context['ensID'] = $req['ensID'];
}
if (isset($req['method'])) {
$context['method'] = $req['method'];
}
if (isset($req['blength'])) {
$context['blength'] = $req['blength'];
}
setContext($context);
}
}
