if (!empty($data['sub'])) {
foreach ($data['sub'] as $data) {
echo display_entry(' ', $data, $ents);
}
}
}
echo "</table>\n";
echo import_module_select_form();
echo "<hr/>\n";
case 'edit':
$scid = isset($_GET['scid']) ? intval($_GET['scid']) : 0;
$res = $xoopsDB->query('SELECT * FROM ' . SHORT . ' WHERE scid=' . $scid);
if ($res && $xoopsDB->getRowsNum($res)) {
$data = $xoopsDB->fetchArray($res);
} else {
$data = post_vars();
}
$xoopsTpl->assign('link', $data);
$xoopsTpl->assign('pscrefs', root_links(0, $scid));
$xoopsTpl->assign('active_status', explode(',', _MD_FORM_ACTIVE_VALUE));
echo $xoopsTpl->fetch("db:shortcut_register.html");
break;
case 'del':
$scid = intval($_GET['scid']);
$res = $xoopsDB->query('SELECT cutid, url, title FROM ' . SHORT . ' WHERE scid=' . $scid);
list($cutid, $url, $title) = $xoopsDB->fetchRow($res);
$res = $xoopsDB->query('SELECT count(scid) FROM ' . SHORT . ' WHERE pscref=' . $scid);
list($sub) = $xoopsDB->fetchRow($res);
echo "<div class='confirm'><p>" . _AM_SHORTCUT_TITLE . " " . htmlspecialchars($title) . " ({$cutid})<br />" . _AM_SHORTCUT_URL . ' ' . htmlspecialchars(eval_url($url)) . "</p>";
if ($sub) {
echo "<p>" . _AM_SHORTCUT_SUBLINKS . " {$sub}</p>";
<input type='hidden' name='PME_sys_rec' value='{$this->rec}'/>
<input type='hidden' name='action' value='REMOVE_FILE_SEQ'/>
<input type='button' name='send' value='Remove' onclick='if(confirm("Are you sure that you want to remove file, filename and sequence for this plasmid?")){this.form.submit()}else{return false;}'/>
</form>
EOD;
}
$imgurl = seq2png($plasmid->sequence, PLASMAPPER_SERVER);
$plasmapper_output = <<<EOD
<center>
<img src="{$imgurl}">
<br/>
<textarea readonly rows="10" cols="100">{$plasmid->sequence}</textarea></center>
</center>
EOD;
$wwwblast_url = WWWBLAST_SERVER . "blast.cgi";
$resp = post_vars($wwwblast_url, array("DATALIB" => "plfeatstock_db", "PROGRAM" => "blastn", "EXPECT" => 10, "OOF_ALIGN" => 0, "OVERVIEW" => "on", "ALIGNMENT_VIEW" => 0, "DESCRIPTIONS" => 100, "ALIGNMENTS" => 50, "COLOR_SCHEMA" => 0, "SEQUENCE" => $plasmid->sequence));
$blast_output = preg_replace("/nph-viewgif.cgi/", WWWBLAST_SERVER . "nph-viewgif.cgi", $resp);
} else {
if ($in_edit_mode) {
$add_gbgz_form = <<<EOD
<div class="centered_form">
<i>Add a <b>.gb</b> or a <b>.gb.gz</b> file to this plasmid</i>
<br/>
<br/>
<form action='' method='post' enctype='multipart/form-data'>
<fieldset>
<legend>Upload .gb File</legend>
<input type='hidden' name='action' value='ADD_GB_GZ_FILE'/>
<input type='hidden' name='PME_sys_operation' value='PME_op_Change'/>
<input type='hidden' name='PME_sys_rec' value='{$this->rec}'/>
<input name='userfile' type='file' size='10'/>
