function PreparePHP_SELF($tmp_REQUEST = '', $remove = array(), $add = array())
{
if (!$tmp_REQUEST) {
$tmp_REQUEST = $_REQUEST;
}
foreach ($_COOKIE as $key => $value) {
unset($tmp_REQUEST[$key]);
}
foreach ($remove as $key) {
unset($tmp_REQUEST[$key]);
}
foreach ($add as $key => $value) {
$tmp_REQUEST[$key] = $value;
}
$PHP_tmp_SELF = 'Modules.php?modname=' . $tmp_REQUEST['modname'];
unset($tmp_REQUEST['modname']);
if (count($tmp_REQUEST)) {
foreach ($tmp_REQUEST as $key => $value) {
if (is_array($value)) {
foreach ($value as $key1 => $value1) {
if (is_array($value1)) {
foreach ($value1 as $key2 => $value2) {
if (is_array($value2)) {
foreach ($value2 as $key3 => $value3) {
$PHP_tmp_SELF .= '&' . $key . '[' . $key1 . '][' . $key2 . '][' . $key3 . ']=' . myUrlEncode(str_replace('\\"', '"', $value3));
}
} else {
$PHP_tmp_SELF .= '&' . $key . '[' . $key1 . '][' . $key2 . ']=' . myUrlEncode(str_replace('\\"', '"', $value2));
}
}
} else {
$PHP_tmp_SELF .= '&' . $key . '[' . $key1 . ']=' . myUrlEncode(str_replace('\\"', '"', $value1));
}
}
} else {
if ($value != '') {
$PHP_tmp_SELF .= '&' . $key . "=" . myUrlEncode(str_replace('\\"', '"', $value));
}
}
}
}
return $PHP_tmp_SELF;
}
<?php
//prepare the templates and include all neccessary
if (!isset($rootpath)) {
$rootpath = '';
}
require_once './lib/common.inc.php';
global $stat_menu, $mnu_siteid;
//Preprocessing
if ($error == false) {
//user logged in?
if ($usr == false) {
$target = myUrlEncode(tpl_get_current_page());
tpl_redirect('login.php?target=' . $target);
} else {
// check for old-style parameters
if (isset($_REQUEST['userid'])) {
$user_id = $_REQUEST['userid'];
} else {
$user_id = $usr['userid'];
}
tpl_set_var('userid', $user_id);
require $stylepath . '/viewprofile.inc.php';
require $stylepath . '/lib/icons.inc.php';
$tplname = 'viewprofile';
if ($user_id != $usr['userid']) {
// do not highlight My stats menu item if browsing other users stats
$mnu_siteid = 'start';
}
$stat_menu = array('title' => tr('Statictics'), 'menustring' => tr('Statictics'), 'siteid' => 'statlisting', 'navicolor' => '#E8DDE4', 'visible' => false, 'filename' => 'viewprofile.php?userid=' . $user_id, 'submenu' => array(array('title' => tr('graph_find'), 'menustring' => tr('graph_find'), 'visible' => true, 'filename' => 'ustatsg2.php?userid=' . $user_id, 'newwindow' => false, 'siteid' => 'findstat', 'icon' => 'images/actions/stat'), array('title' => tr('graph_created'), 'menustring' => tr('graph_created'), 'visible' => true, 'filename' => 'ustatsg1.php?userid=' . $user_id, 'newwindow' => false, 'siteid' => 'createstat', 'icon' => 'images/actions/stat')));
$content = "";
$rdf_header .= "\n xmlns:{$prefixTmp}=\"{$NSTmp}\"";
}
$strOutput = "{$rdf_header} >\n<owl:Ontology rdf:about=\"" . preg_replace('/\\/obo\\//', "/obo/{$o}/about/", $iri) . "\">\n</owl:Ontology>\n{$strOutput}\n</rdf:RDF>";
if (strpos($_SERVER['HTTP_ACCEPT'], 'application/rdf+xml') !== false) {
header("Content-type: application/rdf+xml");
} elseif (strpos($_SERVER['HTTP_ACCEPT'], 'application/xml') !== false) {
header("Content-type: application/xml");
} else {
header("Content-type: text/xml");
}
$filename = createRandomPassword();
// file_put_contents("/tmp/$filename.in", $strOutput);
$strOutput = curl_post_contents("http://141.211.109.48:8080/Ontobee/Reformat.jsp", array("ifile" => $strOutput));
// $strOutput = file_get_contents("http://141.211.109.48:8080/Ontobee/Reformat.jsp?ifile=/tmp/$filename.in");
// $strOutput = file_get_contents("/tmp/$filename.out");
$strOutput = str_replace('<rdf:RDF', '<?xml-stylesheet type="text/xsl" href="/browser/xslt.php?o=' . $o . '&iri=' . myUrlEncode($iri) . '"?>
<rdf:RDF', $strOutput);
$strOutput = str_replace('</owl:Ontology>', ' <owl:imports rdf:resource="' . $settings['ns_main_original'] . '"/>
</owl:Ontology>', $strOutput);
print $strOutput;
//<owl:imports rdf:resource=\"".$settings['ns_main_original']."\"/>
} else {
// can not find this term
header($_SERVER["SERVER_PROTOCOL"] . " 404 Not Found");
include '404.php';
}
} else {
header("Content-type: text/xml");
$strOutput = '<?xml version="1.0"?>
<error>Incorrect ontology or term URL</error>';
print $strOutput;
} else {
false;
}
}
}
}
}
function myUrlEncode($string)
{
$entities = array('%21', '%2A', '%27', '%28', '%29', '%3B', '%3A', '%40', '%26', '%3D', '%2B', '%24', '%2C', '%2F', '%3F', '%25', '%23', '%5B', '%5D');
$replacements = array('!', '*', "'", "(", ")", ";", ":", "@", "&", "=", "+", "\$", ",", "/", "?", "%", "#", "[", "]");
return str_replace($entities, $replacements, urlencode($string));
}
$url = 'https://vasilis.nl/';
if (isset($_GET["u"])) {
$url = myUrlEncode(GET('u'));
}
?>
<article tabindex="0">
<iframe tabindex="-1" src="<?php
echo $url;
?>
"></iframe>
</article>
<article tabindex="0">
<iframe tabindex="-1" src="<?php
echo $url;
?>
"></iframe>
</article>
<article tabindex="0">
?>
<div style="background-color:#EAF1F2; border:#99CCFF 1px solid; margin-top:4px; margin-bottom:12px">
<ul>
<?php
if ($l != '') {
$final_results = $results_by_letter[$l];
} else {
$final_results = array_slice($final_results, $recordsPerPage * ($currPage - 1), $recordsPerPage);
}
foreach ($final_results as $sub => $obj) {
?>
<li><a href="/browser/rdf.php?o=<?php
print $o;
?>
&iri=<?php
print myUrlEncode($sub);
?>
"><?php
print htmlentities($obj);
?>
</a></li>
<?php
}
?>
</ul>
</div>
<?php
}
} else {
include '../inc/input_error.php';
}
if (isset($settings['ontology_fullname'])) {
foreach ($ref_types as $ref_type) {
$querystring = "\nPREFIX rdf: <{$settings['ns_rdf']}>\nPREFIX owl: <{$settings['ns_owl']}>\nSELECT count(distinct ?s) as ?num_o\nFROM <{$settings['ns_main']}>\n\n\nWHERE {?s rdf:type owl:{$ref_type}.\nFILTER regex(?s, '^http')\n} \n";
//error_log($querystring, 3, '/tmp/error.log');
$result = json_query($querystring);
// $num_queries++;
// var_dump($result);
if (isset($result[0]['num_o']) && $result[0]['num_o'] > 0) {
$total_terms += $result[0]['num_o'];
?>
<li><a href="term.php?o=<?php
print $o;
?>
&iri=<?php
print myUrlEncode($settings['ns_owl'] . $ref_type);
?>
">
<?php
print $ref_type;
?>
</a> (
<?php
print $result[0]['num_o'];
?>
)</li>
<?php
}
}
} else {
?>
function printRDFjsonEquivalent($obj_equiv, $a_label, $relation = 'and', $last_re = 'and', $first_re = true)
{
global $o;
$strOut = '';
$bracket = false;
if (isset($obj_equiv['r'])) {
if ($first_re) {
$relation = $obj_equiv['r'];
$last_re = $relation;
} else {
$last_re = $relation;
$relation = $obj_equiv['r'];
}
$first_re = false;
if ($relation != $last_re) {
$bracket = true;
}
}
if (isset($obj_equiv['v'])) {
$v = $obj_equiv['v'];
if ($bracket) {
$strOut .= '(';
}
if ($relation == 'not') {
$strOut .= "{$relation} ";
}
if (!is_array($v[0])) {
if ($v[0] != 'http://www.w3.org/1999/02/22-rdf-syntax-ns#nil') {
$strOut .= '<a oncontextmenu="return false;" href="/browser/rdf.php?o=' . $o . '&iri=' . myUrlEncode($v[0]) . '">' . UTF_to_Unicode($a_label[$v[0]]) . '</a>';
}
} else {
$strOut .= printRDFjsonEquivalent($v[0], $a_label, $relation, $last_re, $first_re);
}
if (isset($v[1])) {
if (!is_array($v[1])) {
if ($v[1] != 'http://www.w3.org/1999/02/22-rdf-syntax-ns#nil') {
$strOut .= " {$relation} " . '<a oncontextmenu="return false;" href="/browser/rdf.php?o=' . $o . '&iri=' . myUrlEncode($v[1]) . '">' . UTF_to_Unicode($a_label[$v[1]]) . '</a>';
}
} else {
$strOut .= " {$relation} " . printRDFjsonEquivalent($v[1], $a_label, $relation, $last_re, $first_re);
}
}
if ($bracket) {
$strOut .= ')';
}
}
return $strOut;
}
if (!empty($settings['core_terms'])) {
?>
<div style="font-weight:bold">Top level terms and selected core <?php
print $settings['ontology_name'];
?>
terms</div>
<div style="background-color:#EAF1F2; border:#99CCFF 1px solid; margin-top:4px; margin-bottom:12px">
<ul>
<?php
foreach ($settings['core_terms'] as $term_url => $term_label) {
?>
<li><a href="/browser/rdf.php?o=<?php
print $o;
?>
&iri=<?php
print myUrlEncode($term_url);
?>
">
<?php
print $term_label;
?>
</a></li>
<?php
}
?>
</ul>
</div>
<?php
}
}
?>
"><?php
print $other_ontology['ontology_fullname'];
?>
</a></td>
<td bgcolor="#EAF1F2"><a href="<?php
echo $owl_file_url;
?>
"><?php
echo $owl_file_name;
?>
</a></td>
<td bgcolor="#EAF1F2"><a oncontextmenu="return false;" href="/browser/rdf.php?o=<?php
print $other_ontology['ontology_abbrv'];
?>
&iri=<?php
print myUrlEncode($iri);
?>
">'<?php
print $main_label;
?>
' in <?php
echo $owl_file_name;
?>
</a></td>
<td bgcolor="#EAF1F2">
<?php
if ($other_ontology['home'] != '') {
$tokens = preg_split('/\\|/', $other_ontology['home']);
if (sizeof($tokens) == 2) {
?>
<a href="<?php
<?php
}
}
$term_count = 0;
foreach ($subClasses as $subClass_url => $subClass_label) {
if ($subClass_label == '') {
$subClass_label = getShortTerm($subClass_url);
}
if (!isset($hasC[$subClass_url])) {
$term_count++;
?>
<li>-<a oncontextmenu="return false;" href="/browser/rdf.php?o=<?php
print $o;
?>
&iri=<?php
print myUrlEncode($subClass_url);
?>
"><?php
print UTF_to_Unicode($subClass_label);
?>
</a></li>
<?php
}
}
?>
</ul>
</div>
<?php
}
?>
if (isset($result['g'])) {
$ontology = isset($array_ontology[$result['g']]) ? $array_ontology[$result['g']] : '';
}
if ($ontology != '') {
?>
<li><?php
print preg_replace('/(' . $tkeywords . ')/i', '<strong>$1</strong>', $result['o']);
?>
<strong>(<?php
print $ontology;
?>
)</strong>: <a href="/browser/rdf.php?o=<?php
print $ontology;
?>
&iri=<?php
print myUrlEncode($result['s']);
?>
">
<?php
print $result['s'];
?>
</a></li>
<?php
}
}
?>
</ol>
</p>
<?php
} else {
?>
</div>
<?php
}
if (isset($result_main[$settings['ns_owl'] . 'inverseOf'])) {
?>
<div style="font-weight:bold">Inverse Properties</div>
<div style="background-color:#EAF1F2; border:#99CCFF 1px solid; margin-top:4px; margin-bottom:12px; padding:4px">
<span>
<?php
$a_inverseOf = array();
foreach ($result_main[$settings['ns_owl'] . 'inverseOf'] as $inverseOf) {
if ($inverseOf['type'] == 'bnode') {
$obj_equiv = getRDFjsonEquivalent($term_cbd, $inverseOf['value'], $a_label, $link = true);
$a_inverseOf[] = printRDFjsonEquivalent($obj_equiv, $a_label);
} else {
$a_inverseOf[] = "<a oncontextmenu=\"return false;\" href=\"/browser/rdf.php?o={$o}&iri=" . myUrlEncode($inverseOf['value']) . "\">" . $a_label[$inverseOf['value']] . "</a>";
}
}
print join(', ', $a_inverseOf);
?>
</span>
</div>
<?php
}
if (!empty($a_term_type)) {
?>
<div style="font-weight:bold">Characteristics</div>
<div style="background-color:#EAF1F2; border:#99CCFF 1px solid; margin-top:4px; margin-bottom:12px; padding:4px">
<span>
<?php
print join(', ', $a_term_type);
?> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <title><?php echo $term_short_id; ?> , <?php echo $main_label; ?> </title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"/> <link rel="alternate" type="application/rdf+xml" title="RDF Version" href="/browser/rdf.php?o=<?php echo $o; ?> &iri=<?php echo myUrlEncode($iri); ?> " /> <link rel="canonical" href="<?php echo $iri; ?> "/> <link href="/css/styleMain.css" rel="stylesheet" type="text/css" /> <link rel="stylesheet" href="../js/jquery/themes/base/jquery.ui.all.css"/> <script src="../js/jquery/jquery-1.7.1.js" type="text/javascript"></script> <script src="../js/jquery/ui/jquery.ui.core.js" type="text/javascript"></script> <script src="../js/jquery/ui/jquery.ui.widget.js" type="text/javascript"></script> <script src="../js/jquery/ui/jquery.ui.position.js" type="text/javascript"></script> <script src="../js/jquery/ui/jquery.ui.autocomplete.js" type="text/javascript"></script> <script src="../js/about.js" type="text/javascript"></script> </head>
}
} else {
$results3[] = $result;
}
}
foreach ($results3 as $result) {
if ($count > 100) {
break;
}
$show_term = true;
if (isset($result['g'])) {
if (isset($array_ontology[$result['g']])) {
$ontology_tmp = $array_ontology[$result['g']];
} else {
$show_term = false;
}
} else {
$ontology_tmp = $ontology;
}
if ($show_term) {
$tokens = preg_split('/[\\/#]/', $result['s']);
$term_id = array_pop($tokens);
if (!isset($terms[$ontology_tmp . ';' . $result['o']])) {
$count++;
$jason[] = array('id' => $ontology_tmp . ':::' . myUrlEncode($result['s']), 'value' => $result['o'], 'label' => $result['o'] . ' (' . $ontology_tmp . ': ' . $term_id . ')');
$terms[$ontology_tmp . ';' . $result['o']] = 1;
}
}
}
}
print json_encode($jason);
}
?>
</ul>
</div>
<?php
}
if (isset($result_main[$settings['ns_owl'] . 'disjointWith'])) {
?>
<div style="font-weight:bold">Disjoints</div>
<div style="background-color:#EAF1F2; border:#99CCFF 1px solid; margin-top:4px; margin-bottom:12px; padding:4px">
<span>
<?php
$a_disjoint = array();
foreach ($result_main[$settings['ns_owl'] . 'disjointWith'] as $disjointWith) {
if ($disjointWith['type'] == 'bnode') {
$obj_equiv = getRDFjsonEquivalent($term_cbd, $disjointWith['value'], $a_label, $link = true);
$a_disjoint[] = printRDFjsonEquivalent($obj_equiv, $a_label);
} else {
$a_disjoint[] = "<a oncontextmenu=\"return false;\" href=\"/browser/rdf.php?o={$o}&iri=" . myUrlEncode($disjointWith['value']) . "\">" . $a_label[$disjointWith['value']] . "</a>";
}
}
print join(', ', $a_disjoint);
?>
</span>
</div>
<?php
}
}
?>
