}
// Add to our list of nodes any intermediate nodes in the paths
// For example, if we have a node for a mouse and for a human, make sure we have a node for
// mammals
$x = array();
foreach ($paths as $label => $path) {
$nodes = explode("/", $path);
$n = count($nodes);
$p = '';
for ($i = 1; $i < $n; $i++) {
$p .= '/' . $nodes[$i];
array_push($x, $p);
}
}
$x = array_unique($x);
$paths = array_merge($paths, get_names($x));
if ($debug) {
echo '<pre>';
echo "Paths for all tags and intermediate nodes:\n";
print_r($paths);
echo '</pre>';
}
// Construct tree from paths
$t = new Tree();
$t->PathsToTree($paths);
echo '<div>';
echo $t->WriteTree($tags, $ids, $url);
// Tags not found in classification
if (count($not_found) != 0) {
echo '<p><b>Tags not found</b></p>';
echo '<ul>';
?>
">Edit</a> | </span>
<span class="delete"><a href="<?php
echo $delete_url;
?>
"
class="submitdelete">Delete</a></span>
</div>
</td>
<td><?php
echo $value->wp_role;
?>
</td>
<td><?php
echo get_names($value->current_rule, $MembershipStatus);
?>
</td>
<td><?php
echo get_names($value->expiry_rule, $MembershipStatus);
?>
</td>
<td><?php
echo $value->expire_wp_role;
?>
</td>
</tr>
<?php
}
?>
</tbody>
</table>
$formulas[$value] = 1;
}
}
arsort($formulas);
//$formulas = array_slice(array_keys($formulas), 0, 5);
$formulas = array_keys($formulas);
echo '<ol>';
foreach ($formulas as $value) {
//echo '<li class="list-group-item">';
echo '<li>';
echo render_value($dbc, $db_name, $value, true);
echo '<p/></li>';
}
echo '</ol>';
}
$names = get_names($keywords);
$ids = array();
foreach ($names as $name) {
$id = get_entity_of_type($dbc, $name, $question_type);
if ($id != '') {
array_push($ids, $id);
}
}
if (!empty($ids)) {
echo '<p>您输入的疾病为：';
foreach ($ids as $id) {
echo ' ' . render_value($dbc, $db_name, PREFIX . $id, false);
}
echo '</p>';
foreach ($ids as $id) {
?>
function replace_Indet_sp($xml_string)
{
if (!is_numeric(stripos($xml_string, "Indet"))) {
return $xml_string;
}
echo "\n\n this resource has 'Indet.' taxa \n";
$xml = simplexml_load_string($xml_string);
$i = 0;
foreach ($xml->taxon as $taxon) {
$i++;
$dc = $taxon->children("http://purl.org/dc/elements/1.1/");
$dwc = $taxon->children("http://rs.tdwg.org/dwc/dwcore/");
$dcterms = $taxon->children("http://purl.org/dc/terms/");
echo "\n " . $dc->identifier . " -- sciname: [" . $dwc->ScientificName . "]";
if (is_numeric(stripos($dwc->ScientificName, "Indet")) || is_numeric(stripos($dwc->Kingdom, "Indet")) || is_numeric(stripos($dwc->Phylum, "Indet")) || is_numeric(stripos($dwc->Class, "Indet")) || is_numeric(stripos($dwc->Order, "Indet")) || is_numeric(stripos($dwc->Family, "Indet")) || is_numeric(stripos($dwc->Genus, "Indet"))) {
if (isset($dwc->Genus)) {
$ancestry['Genus'] = (string) $dwc->Genus;
}
if (isset($dwc->Family)) {
$ancestry['Family'] = (string) $dwc->Family;
}
if (isset($dwc->Order)) {
$ancestry['Order'] = (string) $dwc->Order;
}
if (isset($dwc->Class)) {
$ancestry['Class'] = (string) $dwc->Class;
}
if (isset($dwc->Phylum)) {
$ancestry['Phylum'] = (string) $dwc->Phylum;
}
if (isset($dwc->Kingdom)) {
$ancestry['Kingdom'] = (string) $dwc->Kingdom;
}
$ancestry['ScientificName'] = (string) $dwc->ScientificName;
$ancestry = get_names($ancestry);
echo "\n final sciname: [" . $ancestry['ScientificName'] . "]";
$dwc->ScientificName = $ancestry['ScientificName'];
if (isset($dwc->Genus)) {
$dwc->Genus = $ancestry['Genus'];
}
if (isset($dwc->Family)) {
$dwc->Family = $ancestry['Family'];
}
if (isset($dwc->Order)) {
$dwc->Order = $ancestry['Order'];
}
if (isset($dwc->Class)) {
$dwc->Class = $ancestry['Class'];
}
if (isset($dwc->Phylum)) {
$dwc->Phylum = $ancestry['Phylum'];
}
if (isset($dwc->Kingdom)) {
$dwc->Kingdom = $ancestry['Kingdom'];
}
if (!$ancestry['ScientificName']) {
echo "\n deleted identifier: [" . $dc->identifier . "] \n";
unset($dc->identifier);
unset($dc->source);
unset($dwc->Kingdom);
unset($dwc->Phylum);
unset($dwc->Class);
unset($dwc->Order);
unset($dwc->Family);
unset($dwc->Genus);
unset($dwc->ScientificName);
unset($xml->taxon[$i - 1]->commonName);
unset($xml->taxon[$i - 1]->synonym);
unset($dcterms->created);
unset($dcterms->modified);
unset($xml->taxon[$i - 1]->reference);
unset($xml->taxon[$i - 1]->dataObject);
}
}
}
return $xml->asXML();
}
