Ejemplo n.º 1
0
                $_SESSION['edmaps'][$mapName] = $mapName;
                mpLog("edmap-eds:User requested 2Fo-Fc map for {$code} from the EDS");
                $s .= "<p>The 2Fo-Fc map for {$code} was successfully retrieved from the EDS.</p>\n";
            } else {
                $s .= "<p><div class='alert'>The 2Fo-Fc map for {$code} could not be retrieved from the EDS.</div></p>\n";
            }
        } else {
            $s .= "<p><div class='alert'>The 2Fo-Fc map for {$code} could not be retrieved, because a file of the same name already exists.</div></p>\n";
        }
    }
    if ($_SESSION['bgjob']['eds_fofc']) {
        setProgress($prog, 'fofc');
        $mapName = "{$code}-diff.omap.gz";
        $mapPath = "{$mapDir}/{$mapName}";
        if (!file_exists($mapPame)) {
            $tmpMap = getEdsMap($code, 'omap', 'fofc');
            if ($tmpMap && copy($tmpMap, $mapPath)) {
                unlink($tmpMap);
                $_SESSION['edmaps'][$mapName] = $mapName;
                mpLog("edmap-eds:User requested Fo-Fc map for {$code} from the EDS");
                $s .= "<p>The Fo-Fc map for {$code} was successfully retrieved from the EDS.</p>\n";
            } else {
                $s .= "<p><div class='alert'>The Fo-Fc map for {$code} could not be retrieved from the EDS.</div></p>\n";
            }
        } else {
            $s .= "<p><div class='alert'>The Fo-Fc map for {$code} could not be retrieved, because a file of the same name already exists.</div></p>\n";
        }
    }
} else {
    $title = "Failed to retrieve electron density from the EDS";
    $s .= "Unable to retrieve maps from the EDS because '{$code}' is not a valid PDB ID.";
Ejemplo n.º 2
0
function getMaps($code)
{
    global $map_notebook_msg;
    $map_notebook_msg = "";
    $prog = getProgressTasks();
    if ($_SESSION['bgjob']['eds_2fofc']) {
        $prog['2fofc'] = "Download 2Fo-Fc map from the EDS";
    }
    if ($_SESSION['bgjob']['eds_fofc']) {
        $prog['fofc'] = "Download Fo-Fc (difference) map from the EDS";
    }
    $mapDir = "{$_SESSION['dataDir']}/" . MP_DIR_EDMAPS;
    if (!file_exists($mapDir)) {
        mkdir($mapDir, 0777);
    }
    if ($_SESSION['bgjob']['eds_2fofc']) {
        setProgress($prog, '2fofc');
        $mapName = "{$code}.omap.gz";
        $mapPath = "{$mapDir}/{$mapName}";
        if (!file_exists($mapPame)) {
            $tmpMap = getEdsMap($code, 'omap', '2fofc');
            if ($tmpMap && copy($tmpMap, $mapPath)) {
                unlink($tmpMap);
                $_SESSION['edmaps'][$mapName] = $mapName;
                mpLog("edmap-eds:User requested 2Fo-Fc map for {$code} from the EDS");
                $map_notebook_msg .= "<p>The 2Fo-Fc map for {$code} was successfully retrieved from the EDS.</p>\n";
            } else {
                $map_notebook_msg .= "<p><div class='alert'>The 2Fo-Fc map for {$code} could not be retrieved from the EDS.</div></p>\n";
            }
        } else {
            echo "Map file already exists";
        }
    }
    if ($_SESSION['bgjob']['eds_fofc']) {
        setProgress($prog, 'fofc');
        $mapName = "{$code}-diff.omap.gz";
        $mapPath = "{$mapDir}/{$mapName}";
        if (!file_exists($mapPame)) {
            $tmpMap = getEdsMap($code, 'omap', 'fofc');
            if ($tmpMap && copy($tmpMap, $mapPath)) {
                unlink($tmpMap);
                $_SESSION['edmaps'][$mapName] = $mapName;
                mpLog("edmap-eds:User requested Fo-Fc map for {$code} from the EDS");
                $map_notebook_msg .= "<p>The Fo-Fc map for {$code} was successfully retrieved from the EDS.</p>\n";
            } else {
                $map_notebook_msg .= "<p><div class='alert'>The Fo-Fc map for {$code} could not be retrieved from the EDS.</div></p>\n";
            }
        }
    }
    setProgress($prog, null);
}