protected function execute(InputInterface $input, OutputInterface $output)
{
/** @var User $user */
$user = new User('tpateffoz', [], $this->getContainer()->getParameter('api_recolnat_user'), $this->getContainer()->getParameter('user_group'));
$user->init($this->getContainer()->getParameter('export_path'));
$testDir = $user->getDataDirPath() . 'test/';
$testFile = $testDir . 'test.txt';
$userGroup = $this->getContainer()->getParameter('user_group');
UtilityService::createDir($testDir, $userGroup);
UtilityService::createFile($testFile, $userGroup);
$output->writeln($testDir);
}
/**
* @param array $datas
* @param string $exportPath
* @param string $userGroup
*/
public function __construct($datas, $exportPath, $userGroup)
{
$this->datas = $datas;
$this->exportPath = $exportPath;
$this->userGroup = $userGroup;
UtilityService::createDir($exportPath, $userGroup);
foreach ($this->entitiesName as $className) {
$entityExporterConstructor = '\\AppBundle\\Business\\Exporter\\Entity\\' . ucfirst($className) . 'Exporter';
/* @var $entityExporter \AppBundle\Business\Exporter\Entity\AbstractEntityExporter */
$this->arrayEntityExport[$className] = new $entityExporterConstructor();
}
}
/**
* @param InputInterface $input
* @param OutputInterface $output
* @return string
* @throws \Exception
*/
protected function execute(InputInterface $input, OutputInterface $output)
{
$this->translator = $this->getContainer()->get('translator');
$this->collectionCode = $input->getArgument('collectionCode');
$this->institutionCode = $input->getArgument('institutionCode');
$this->collection = $this->getContainer()->get('utility')->getCollection($this->institutionCode, $this->collectionCode);
$this->setLogFilePath();
$this->user = $this->getUser($input);
$diffHandler = new DiffHandler($this->user->getDataDirPath(), $this->collection, $this->getContainer()->getParameter('user_group'));
$this->collectionPath = $diffHandler->getCollectionPath();
if (UtilityService::isDateWellFormatted($input->getArgument('startDate'))) {
$this->startDate = \DateTime::createFromFormat('d/m/Y', $input->getArgument('startDate'));
} else {
$this->log($this->translator->trans($input->getArgument('username') . ' ' . 'access.denied.wrongDateFormat', [], 'exceptions'));
throw new \Exception($this->translator->trans('access.denied.wrongDateFormat', [], 'exceptions'));
}
$this->log('startDate : ' . $this->startDate->format('c'));
$this->log('Collection Code : ' . $this->collectionCode);
$diffManager = $this->getContainer()->get('diff.manager');
$diffManager->setCollectionCode($this->collectionCode);
$diffManager->setStartDate($this->startDate);
$diffManager->harvestDiffs();
$diffComputer = $this->getContainer()->get('diff.computer');
$diffComputer->setCollection($this->collection);
$catalogNumbersFiles = $this->createCatalogNumbersFiles($diffManager, $diffHandler);
try {
$this->launchDiffProcesses($diffManager, $output);
$mergeResult = $this->mergeFiles($diffManager::ENTITIES_NAME, $diffHandler->getCollectionPath());
$diffHandler->saveData($mergeResult['data']);
$diffHandler->saveTaxons($mergeResult['taxons']);
$this->removeCatalogNumbersFiles($catalogNumbersFiles);
$this->sendMail('success');
} catch (ProcessFailedException $e) {
$this->sendMail('error');
throw $e;
}
$this->closeLogFile();
}
/**
* @param Prefs $prefs
*/
public function savePrefs(Prefs $prefs)
{
UtilityService::createFile($this->getPrefsFileName(), $this->userGroup);
$handle = fopen($this->getPrefsFileName(), 'w');
fwrite($handle, $prefs->toJson());
fclose($handle);
}
/**
* @param string $dirPath
* @param string $userGroup
*/
public function __construct($dirPath, $userGroup)
{
$path = UtilityService::createFile($dirPath . self::FILENAME, $userGroup);
parent::__construct($path, 'c+');
}
/**
* @param string $dirPath
* @param string $userGroup
*/
public function __construct($dirPath, $userGroup)
{
$filePath = UtilityService::createFile($dirPath . '/choices.json', $userGroup);
parent::__construct($filePath, 'c+');
}
/**
* @return string
*/
public function getCollectionPath()
{
$institutionPath = $this->getPath() . '/' . $this->collection->getInstitution()->getInstitutioncode() . '/';
UtilityService::createDir($institutionPath, $this->userGroup);
$collectionPath = $institutionPath . $this->collection->getCollectioncode();
return UtilityService::createDir($collectionPath, $this->userGroup);
}
/**
* @param array $specimen
* @return array
*/
private function addKeys(array $specimen)
{
if (!is_null($specimen['Recolte'])) {
$specimen['Specimen']['eventid'] = UtilityService::formatRawId($specimen['Recolte']['eventid']);
}
if (!is_null($specimen['Localisation'])) {
$specimen['Recolte']['locationid'] = $specimen['Localisation']['locationid'];
}
if (count($specimen['Bibliography'])) {
foreach ($specimen['Bibliography'] as $key => $item) {
$specimen['Bibliography'][$key]['occurrenceid'] = UtilityService::formatRawId($specimen['Specimen']['occurrenceid']);
}
}
if (count($specimen['Multimedia'])) {
foreach ($specimen['Multimedia'] as $key => $item) {
$specimen['Multimedia'][$key]['occurrenceid'] = UtilityService::formatRawId($specimen['Specimen']['occurrenceid']);
}
}
if (!is_null($specimen['Stratigraphy'])) {
$specimen['Specimen']['geologicalcontextid'] = $specimen['Stratigraphy']['geologicalcontextid'];
}
return $specimen;
}
