/**
* Tests that, when loading the User accounts module > edit_user submodule, some
* text appears in the body.
*
* @return void
*/
function testUserAccountsEditUserDoespageLoad()
{
$this->webDriver->get($this->url . "?test_name=user_accounts&subtest=edit_user");
$bodyText = $this->webDriver->findElement(WebDriverBy::cssSelector("body"))->getText();
$this->assertContains("Edit User", $bodyText);
$this->assertEquals("password", $this->webDriver->findElement(WebDriverBy::Name("Password_md5"))->getAttribute("type"));
$this->assertEquals("checkbox", $this->webDriver->findElement(WebDriverBy::Name("NA_Password"))->getAttribute("type"));
$this->assertEquals("password", $this->webDriver->findElement(WebDriverBy::Name("__Confirm"))->getAttribute("type"));
}
function testLoginSuccess()
{
$this->webDriver->get($this->url . '/main.php?logout=true');
$username = $this->webDriver->findElement(WebDriverBy::Name("username"));
$this->assertEquals('', $username->getAttribute("value"));
$password = $this->webDriver->findElement(WebDriverBy::Name("password"));
$this->assertEquals('', $password->getAttribute("value"));
$login = $this->webDriver->findElement(WebDriverBy::Name("login"));
$this->assertEquals('submit', $login->getAttribute("type"));
$this->assertEquals('Login', $login->getAttribute("value"));
$username->sendKeys("UnitTester");
$password->sendKeys("4test4");
$login->click();
$bodyText = $this->webDriver->findElement(WebDriverBy::cssSelector("body"))->getText();
$this->assertContains("Welcome", $bodyText);
}
/**
* Tests that with useEDC turned off, edc related fields do not appear
* on the page.
*
* @return none
*/
function testNewProfileLoadsWithoutEDC()
{
$this->setUpConfigSetting("useEDC", "false");
$this->webDriver->get($this->url . "?test_name=new_profile");
try {
$edc1 = $this->webDriver->findElement(WebDriverBy::Name("edc1"));
} catch (NoSuchElementException $e) {
$edc1 = null;
}
$this->assertNull($edc1);
try {
$edc2 = $this->webDriver->findElement(WebDriverBy::Name("edc2"));
} catch (NoSuchElementException $e) {
$edc2 = null;
}
$this->assertNull($edc2);
$this->restoreConfigSetting("useEDC");
}
function testDataDictSearchKeywordFilters()
{
$this->webDriver->get($this->url . "/datadict/");
$this->webDriver->wait(120, 1000)->until(WebDriverExpectedCondition::presenceOfElementLocated(WebDriverBy::Name("keyword")));
$searchKey = $this->webDriver->findElements(WebDriverBy::Name("keyword"));
switch (count($searchKey)) {
case 1:
break;
case 0:
$this->fail("Could not find search keyword field");
return;
default:
$this->fail("Too many search keyword fields.");
return;
}
$searchKey[0]->sendKeys("NotRealMAGICNUMBER335");
$searchButton = $this->webDriver->findElement(WebDriverBy::Name("filter"));
$searchButton->click();
$this->markTestSkipped("Data Dict test not yet updated for React");
/*
try {
while (true) {
$oldBody->isDisplayed();
}
} catch(Exception $e) {
$this->webDriver->executescript("document.documentElement.outerHTML");
}
*/
$rows = $this->webDriver->findElements(WebDriverBy::cssSelector("table tbody tr"));
$this->assertTrue(count($rows) == 1, "Incorrect number of rows returned when filtering for keyword on datadict" . print_r($rows, true));
$cols = $this->webDriver->findElements(WebDriverBy::cssSelector("table tbody tr td"));
// Rownumber
$this->assertEquals($cols[0]->getText(), "1");
// SourceFrom
$this->assertEquals($cols[1]->getText(), "nowhere");
// Name
$this->assertEquals($cols[2]->getText(), "TestParameterNotRealMAGICNUMBER335");
// SourceField
$this->assertEquals($cols[3]->getText(), "imaginary");
// Description
$this->assertEquals($cols[4]->getText(), "I am a fake description used only for testing you should not see me. MAGICNUMBER335");
}
/**
* Performs a candidate search using the specified criteria and verifies
* the candidates obtained.
*
* @param array $criteria criteria for the search.
* @param string $expectedResults the candidates that should be returned.
*
* @return void.
*/
private function _assertSearchBy(array $criteria, $expectedResults)
{
foreach ($criteria as $elementName => $elementValue) {
$element = $this->webDriver->findElement(WebDriverBy::Name($elementName));
switch ($element->getTagName()) {
case 'input':
$element->clear();
$element->sendKeys($elementValue);
break;
case 'select':
$selectElement = new WebDriverSelect($element);
$selectElement->selectByVisibleText($elementValue);
break;
default:
throw Exception('Element type ' . $element->getTagName() . ' not supported');
}
}
$showDataButton = $this->webDriver->findElement(WebDriverBy::Id("showdata_advanced_options"));
$showDataButton->click();
$this->_assertCandidateTableContents('datatable', $expectedResults);
}
/**
* Tests that, upload function in document_repository module
*
* @return void
*/
function testDocumentRepositoryUploadFileEditDeleteComment()
{
$this->markTestSkipped("This method isn't working properly on travis.");
$this->safeGet($this->url . "/document_repository/");
$this->safeFindElement(WebDriverBy::Xpath("//*[@id='TESTTESTTESTTESTa']/td/span"))->click();
$this->safeFindElement(WebDriverBy::Id("9999999"))->click();
// modify comment,search it and check it
$select = $this->safeFindElement(WebDriverBy::Id("categoryEdit"));
$element = new WebDriverSelect($select);
$element->selectByVisibleText("TESTTESTTESTTEST");
$site = $this->safeFindElement(WebDriverBy::Id("siteEdit"));
$elementSite = new WebDriverSelect($site);
$elementSite->selectByVisibleText("Any");
$this->safeFindElement(WebDriverBy::Id("commentsEdit"))->sendKeys("This is a test comment!");
$this->safeFindElement(WebDriverBy::Id("postEdit"))->click();
sleep(5);
$this->safeFindElement(WebDriverBy::Name("File_name"))->sendKeys("README.md");
$this->safeFindElement(WebDriverBy::Name("filter"))->click();
$text = $this->safeFindElement(WebDriverBy::cssSelector("#dir-tree > tr"), 3000)->getText();
$this->assertContains("This is a test comment!", $text);
// delete upload file
$this->safeFindElement(WebDriverBy::linkText("Delete"), 3000)->click();
$this->safeFindElement(WebDriverBy::Id("postDelete"))->click();
$this->safeFindElement(WebDriverBy::Name("File_name"))->sendKeys("README.md");
$this->safeFindElement(WebDriverBy::Name("filter"))->click();
sleep(5);
$text = $this->safeFindElement(WebDriverBy::cssSelector("tbody"), 3000)->getText();
$this->assertEquals('', $text);
}
/**
* Tests that, SNP 'Show brief fields' filter works.
*
* Note: the brief fields option should have been tested in
* testGenomicBrowserSNPDataSortableBrief
*
* @-depends testGenomicBrowserSNPDatatable
*
* @return void
*/
function testGenomicBrowserSNPShowBriefFields()
{
$this->markTestIncomplete('Test should be updated for new main genomic browser tab.');
$expected_headers = array('No.', 'PSC', 'DCCID', 'PSCID', 'Gender', 'Subproject', 'DoB', 'ExternalID', 'Chromosome', 'Strand', 'StartLoc', 'EndLoc', 'Size', 'Gene Symbol', 'Gene Name', 'Platform', 'RsID', 'SNP Name', 'SNP Description', 'External Source', 'Observed Base', 'Reference Base', 'Array Report', 'Markers', 'Validation Method', 'Validated', 'Function Prediction', 'Damaging', 'Genotype Quality', 'Exonic Function');
$this->safeGet($this->url . "/genomic_browser/?submendu=snp_browser");
// Apply filter
$this->webDriver->findElement(WebDriverBy::Name('Show_Brief_Results'))->sendKeys("All fields");
$button = $this->webDriver->findElement(WebDriverBy::xPath("\n //input[@name='filter']\n "));
$this->clickToLoadNewPage($button);
// Check column count
$this->safeGet($this->url . "/genomic_browser/?submenu=snp_browser");
$headers = $this->webDriver->findElements(WebDriverBy::xPath("\n //div[@id='lorisworkspace']\n //table[contains(@class, 'dynamictable')]\n /thead\n /tr\n /th\n "));
$this->assertCount(count($expected_headers), $headers, "There should be " . count($expected_headers) . " columns in the table.");
}
function testNewProfilePSCIDSequential()
{
$this->changeStudySite();
$this->webDriver->get($this->url . "/new_profile/");
$dates = $this->webDriver->findElements(WebDriverBy::cssSelector(".input-date"));
$dates[0]->sendKeys("01/01/2015");
$dates[1]->sendKeys("01/01/2015");
$gender = $this->webDriver->findElement(WebDriverBy::Name("gender"));
$gender->sendKeys("Male");
$startVisit = $this->webDriver->findElement(WebDriverBy::Name("fire_away"));
$startVisit->click();
$bodyText = $this->webDriver->findElement(WebDriverBy::cssSelector("body"))->getText();
$this->assertContains("PSCID: BBQ0000", $bodyText);
$this->webDriver->get($this->url . "/new_profile/");
$dates = $this->webDriver->findElements(WebDriverBy::cssSelector(".input-date"));
$dates[0]->sendKeys("01/01/2015");
$dates[1]->sendKeys("01/01/2015");
$gender = $this->webDriver->findElement(WebDriverBy::Name("gender"));
$gender->sendKeys("Male");
$startVisit = $this->webDriver->findElement(WebDriverBy::Name("fire_away"));
$startVisit->click();
$bodyText = $this->webDriver->findElement(WebDriverBy::cssSelector("body"))->getText();
$this->assertContains("PSCID: BBQ0001", $bodyText);
$this->deleteCandidate("BBQ0000");
$this->deleteCandidate("BBQ0001");
$this->resetStudySite();
}
/**
* Performs a candidate search using the specified criteria and verifies
* the candidates obtained.
*
* @param array $criteria criteria for the search.
* @param string $expectedResults the candidates that should be returned.
*
* @return void.
*/
private function _assertSearchBy(array $criteria, $expectedResults)
{
foreach ($criteria as $elementName => $elementValue) {
$element = $this->safeFindElement(WebDriverBy::Name($elementName));
$element->clear();
$element->sendKeys($elementValue);
}
$this->safeClick(WebDriverBy::Name("filter"));
$this->_assertUserTableContents('dynamictable', $expectedResults);
}
/**
* Tests that, input some data and click search button, check the results.
*
* @return void
*/
function testSurveyAccountsSearchButton()
{
//testing search by PSCID
$this->safeGet($this->url . "/survey_accounts/");
$this->webDriver->findElement(WebDriverBy::Name("PSCID"))->sendKeys("8888");
$this->webDriver->findElement(WebDriverBy::Name("filter"))->click();
sleep(5);
$this->webDriver->findElement(WebDriverBy::Name("PSCID"))->clear();
$bodyText = $this->webDriver->getPageSource();
$this->assertContains("8888", $bodyText);
//testing search by Email
$this->safeGet($this->url . "/survey_accounts/");
$this->webDriver->findElement(WebDriverBy::Name("Email"))->sendKeys("*****@*****.**");
$this->webDriver->findElement(WebDriverBy::Name("filter"))->click();
sleep(5);
$this->webDriver->findElement(WebDriverBy::Name("Email"))->clear();
$bodyText = $this->webDriver->getPageSource();
$this->assertContains("*****@*****.**", $bodyText);
}
/**
* Link to visit level comments editable with proper permissions
*
* @return void
*/
function testImageCommentsWindowEditable()
{
$this->markTestSkipped('React components can not be tested');
// Setting permissions to view all sites to view all datasets
$this->setupPermissions(array('imaging_browser_view_allsites', 'imaging_browser_qc'));
$this->safeGet($this->url . "/imaging_browser/");
$NativeLink = $this->webDriver->findElement(WebDriverBy::xPath('//*[@id="lorisworkspace"]/div[2]/div/div/table/tbody/tr/td[12]/a'));
$this->clickToLoadNewPage($NativeLink);
$ImageQCFeedback = $this->webDriver->findElement(WebDriverBy::cssSelector(".mri-second-row-panel > a:nth-child(1) > " . "span:nth-child(1) > span:nth-child(2)"));
$handleList = $this->webDriver->getWindowHandles();
$ImageQCFeedback->click();
$newHandleList = $this->webDriver->getWindowHandles();
$diff = array_diff($newHandleList, $handleList);
$this->assertCount(1, $diff);
$this->webDriver->switchTo()->window($diff[1]);
// First clear the field then send the comments/text
$this->webDriver->findElement(WebDriverBy::Name("savecomments[text][1]"))->clear();
$this->webDriver->findElement(WebDriverBy::Name("savecomments[text][1]"))->sendKeys("Testing comment field within Geometric Intensity");
$SaveButton = $this->webDriver->findElement(WebDriverBy::Name("fire_away"));
$SaveButton->click();
$GeometricDistortionText = $this->webDriver->findElement(WebDriverBy::Name("savecomments[text][1]"))->getText();
$this->assertEquals("Testing comment field within Geometric Intensity", $GeometricDistortionText);
$this->webDriver->switchTo()->window($diff[1])->close();
}
/**
* Tests that,in the not resolved menu, change the Resolution status of the first row.
* Save it and check it.
*
* @return void
*/
function testNotResolvedSaveButton()
{
$this->safeGet($this->url . "/mri_violations/");
$resolutionElement = $this->safeFindElement(WebDriverBy::Name("resolvable[c57b919a921eaa1a43bb5e0c44cd4226]"));
$resolution = new WebDriverSelect($resolutionElement);
$resolution->selectByVisibleText("Inserted");
$this->safeClick(WebDriverBy::Name("fire_away"));
$resolutionElement = $this->safeFindElement(WebDriverBy::Name("resolvable[c57b919a921eaa1a43bb5e0c44cd4226]"));
$resolution = new WebDriverSelect($resolutionElement);
$value = $resolution->getFirstSelectedOption()->getAttribute('value');
$this->assertEquals("inserted", $value);
}
/**
* Tests that page returns success when inputed correctly
*
* @return void
*/
function testNextStageSuccess()
{
$this->webDriver->get($this->url . "/next_stage/?candID=900000&sessionID=999999&identifier=999999");
$dates = $this->webDriver->findElements(WebDriverBy::cssSelector(".input-date"));
$dates[0]->sendKeys("2015-01-01");
$dates[1]->sendKeys("2015-01-01");
$scanDone = $this->webDriver->findElement(WebDriverBy::Name("scan_done"));
$scanDone->sendKeys("No");
$Subproject = $this->webDriver->findElement(WebDriverBy::Name("SubprojectID"));
$Subproject->sendKeys("Control");
$startVisit = $this->webDriver->findElement(WebDriverBy::Name("fire_away"));
$startVisit->click();
$bodyText = $this->webDriver->findElement(WebDriverBy::cssSelector("body"))->getText();
$this->assertContains("Next stage started.", $bodyText);
}
/**
* Tests Clear Form function in resolved conflicts
* author: Wang Shen
*
* @return void
*/
function testClearFormResolvedConflicts()
{
$this->safeGet($this->url . "/conflict_resolver/?submenu=resolved_conflicts");
$keywordElement = $this->webDriver->findElement(WebDriverBy::Name("Question"));
$keywordElement->sendkeys('TestTestTest');
//click clear form button
$this->webDriver->findElement(WebDriverBy::ID("testClearForm1"))->click();
$bodyText = $this->webDriver->findElement(WebDriverBy::Name("Question"))->getText();
$this->assertNotContains("TestTestTest", $bodyText);
}
/**
* Tests that filter with the date of birth
*
* @return void
*/
function testdicomArchiveFileterByDateOfBirth()
{
$this->markTestSkipped("This method isn't working properly on travis.");
//testing the Patient's date of birth
$this->safeGet($this->url . "/dicom_archive/");
$DoBElement = $this->safeFindElement(WebDriverBy::Name("DoB"));
$DoBElement->sendKeys("1900-01-01");
$this->safeClick(WebDriverBy::Name("filter"));
$DoB = $this->safeFindElement(WebDriverBy::cssSelector("tbody"))->getText();
$this->assertContains('1900-01-01', $DoB);
}
/**
* Tests that Add examiner section, insert an Examiner and find it.
*
* @return void
*/
function testExaminerAddExaminer()
{
//insert a new exmainer with name "Test_Examiner" and radiologist
//in the TEST_Site.
$this->safeGet($this->url . "/examiner/");
$this->safeFindElement(WebDriverBy::Name("addName"))->sendKeys("Test_Examiner");
$this->safeFindElement(WebDriverBy::Name("addRadiologist"))->click();
$select = $this->safeFindElement(WebDriverBy::Name("addSite"));
$element = new WebDriverSelect($select);
$element->selectByVisibleText("TEST_Site");
$bodyText = $this->safeFindElement(WebDriverBy::Name("fire_away"))->click();
sleep(5);
//search the examiner which inserted
$this->webDriver->findElement(WebDriverBy::Name("examiner"))->sendKeys("Test_Examiner");
$this->webDriver->findElement(WebDriverBy::Name("filter"))->click();
$bodyText = $this->safeFindElement(WebDriverBy::cssSelector("body"))->getText();
$this->assertContains("Test_Examiner", $bodyText);
}
/**
* Tests that, create a timepoint and input a empty subproject
* get Error message
*
* @return void
*/
function testCreateTimepointErrorEmptySubproject()
{
$this->safeGet($this->url . "/create_timepoint/?candID=900000&identifier=900000");
$this->webDriver->findElement(WebDriverBy::Name("fire_away"))->click();
$bodyText = $this->webDriver->getPageSource();
$this->assertContains("A visit label is required for creating a timepoint.", $bodyText);
}
/**
* Tests that, input some data and click click clear button, check the results.
* The form should refreash and the data should be gone.
* @return void
*/
function testReliabilityClearFormButton()
{
//testing search by PSCID
$this->safeGet($this->url . "/reliability/");
$this->webDriver->findElement(WebDriverBy::Name("PSCID"))->sendKeys("8888");
$this->webDriver->findElement(WebDriverBy::Name("reset"))->click();
$bodyText = $this->webDriver->findElement(WebDriverBy::Name("PSCID"))->getText();
$this->assertEquals("", $bodyText);
//testing search by DCCID
$this->safeGet($this->url . "/reliability/");
$this->webDriver->findElement(WebDriverBy::Name("DCCID"))->sendKeys("8888");
$this->webDriver->findElement(WebDriverBy::Name("reset"))->click();
$bodyText = $this->webDriver->findElement(WebDriverBy::Name("PSCID"))->getText();
$this->assertEquals("", $bodyText);
//testing search by Gender
$this->safeGet($this->url . "/reliability/");
$genderElement = $this->safeFindElement(WebDriverBy::Name("Gender"));
$gender = new WebDriverSelect($genderElement);
$gender->selectByVisibleText("Male");
$this->webDriver->findElement(WebDriverBy::Name("reset"))->click();
$genderElement = $this->safeFindElement(WebDriverBy::Name("Gender"));
$gender = new WebDriverSelect($genderElement);
$value = $gender->getFirstSelectedOption()->getAttribute('value');
$this->assertEquals("", $value);
}
