public function __construct() { $this->headerFooter = HeaderFooterFactory::createHeaderFooter(); $this->pageHome = PageFactory::createHome(); $this->database = DatabaseFactory::createDatabase(); $this->file = FileFactory::setFile(); }
public function countWords($files) { if (!is_array($files)) { $files = array($files); } $factory = new FileFactory(); $result = 0; foreach ($files as $file) { $result += $factory->getFile($file)->getWordCount(); } return $result; }
/** * @covers FileFactory::GetFile */ public function testParameterPass() { $file = $this->object->GetFile("Andris Bērziņš"); $this->assertequals("Andris Bērziņš", $file->studentName); }
function Run() { $idir = $this->GetParameterValue('indir'); $odir = $this->GetParameterValue('outdir'); $files = $this->GetParameterValue('files'); // set the work if ($files != 'all') { // check if comma-separated, or hyphen-range $list = explode(",", $files); if (count($list) == 1) { // try hyphen separated $range = explode("-", $files); if (count($range) == 2) { for ($i = $range[0]; $i <= $range[1]; $i++) { $myfiles[] = $i; } } else { // must a single entry $myfiles[] = $files; } } else { $myfiles = $list; } } $rest_uri = 'http://sabiork.h-its.org/sabioRestWebServices/'; $getReactionIds_url = $rest_uri . "suggestions/SABIOReactionIDs"; $reaction_list_file = $idir . "reactions.xml"; if (!file_exists($reaction_list_file) || $this->GetParameterValue('download') == 'true') { $xml = file_get_contents($getReactionIds_url); if (FALSE === $reaction_ids) { exit; } $f = new FileFactory($reaction_list_file); $f->Write($xml); $f->Close(); } $xml = simplexml_load_file($reaction_list_file); $total = count($xml->SABIOReactionID); if (isset($myfiles)) { $total = count($myfiles); } $i = 0; foreach ($xml->SABIOReactionID as $rid) { if (isset($myfiles)) { if (!in_array($rid, $myfiles)) { continue; } } $i++; echo "{$i} / {$total} : reaction {$rid}"; $reaction_file = $idir . "reaction_" . $rid . ".owl.gz"; if (!file_exists($reaction_file) || $this->GetParameterValue('download') == 'true') { $url = $rest_uri . 'searchKineticLaws/biopax?q=SabioReactionID:' . $rid; $data = file_get_contents($url); if ($data === FALSE) { continue; } $f = new FileFactory($reaction_file, true); $f->Write($data); $f->Close(); } $buf = file_get_contents("compress.zlib://" . $reaction_file); // send for parsing $p = new BioPAX2Bio2RDF(); $p->SetBuffer($buf)->SetBioPAXVersion(3)->SetBaseNamespace("http://sabio.h-its.org/biopax#")->SetBio2RDFNamespace("http://bio2rdf.org/sabiork:")->SetDatasetURI($this->GetDatasetURI()); $rdf = $p->Parse(); $ofile = "sabiork_{$rid}.nt"; $gz = false; if ($this->GetParameterValue("graph_uri")) { $ofile = "sabiork_{$rid}.nq"; } if ($this->GetParameterValue("gzip")) { $gz = true; $ofile .= ".gz"; } $this->SetWriteFile($odir . $ofile, $gz); $this->GetWriteFile()->Write($rdf); $this->GetWriteFile()->Close(); $bio2rdf_download_files[] = $this->GetBio2RDFDownloadURL($this->GetNamespace()) . $ofile; echo PHP_EOL; } // generate the release file $desc = $this->GetBio2RDFDatasetDescription($this->GetNamespace(), "https://github.com/bio2rdf/bio2rdf-scripts/blob/master/sabiork/sabiork.php", $bio2rdf_download_files, "sabiork.h-its.org", array("use-share-modify", "no-commercial"), null, $this->GetParameterValue('download_url'), $this->version); $this->SetWriteFile($odir . $this->GetBio2RDFReleaseFile($this->GetNamespace())); $this->GetWriteFile()->Write($desc); $this->GetWriteFile()->Close(); }
<?php require_once "./classes/gradefile.class.php"; require_once "./classes/pdfgradefile.class.php"; require_once "./classes/rtfgradefile.class.php"; require_once "./classes/filefactory.class.php"; if (isset($_GET["type"])) { $file = FileFactory::GetFile("Kārlis Zummeris", $_GET["type"]); } else { $file = FileFactory::GetFile("Kārlis Zummeris"); } $file->add_grade("2008-10-13", "Matemātika", "8"); $file->add_grade("2008-09-11", "Literatūra", "7"); $file->Generate_Content(); $file->Write_To_Client();
function Run() { $idir = parent::getParameterValue('indir'); $odir = parent::getParameterValue('outdir'); $files = parent::getParameterValue('files'); // set the work if ($files != 'all') { // check if comma-separated, or hyphen-range $list = explode(",", $files); if (count($list) == 1) { // try hyphen separated $range = explode("-", $files); if (count($range) == 2) { for ($i = $range[0]; $i <= $range[1]; $i++) { $myfiles[] = $i; } } else { // must a single entry $myfiles[] = $files; } } else { $myfiles = $list; } } $rest_uri = 'http://sabiork.h-its.org/sabioRestWebServices/'; $getReactionIds_url = $rest_uri . "suggestions/SABIOReactionIDs"; $reaction_list_file = $idir . "reactions.xml"; if (!file_exists($reaction_list_file) || parent::getParameterValue('download') == 'true') { $xml = file_get_contents($getReactionIds_url); if (FALSE === $reaction_list_file) { exit; } $f = new FileFactory($reaction_list_file); $f->Write($xml); $f->Close(); } $xml = simplexml_load_file($reaction_list_file); $total = count($xml->SABIOReactionID); if (isset($myfiles)) { $total = count($myfiles); } $i = 0; parent::setCheckpoint('dataset'); $graph_uri = parent::getGraphURI(); if (parent::getParameterValue('dataset_graph') == true) { parent::setGraphURI(parent::getDatasetURI()); } $suffix = parent::getParameterValue('output_format'); $ofile = "sabiork." . $suffix; $gz = strstr(parent::getParameterValue('output_format'), "gz") ? true : false; parent::setWriteFile($odir . $ofile, $gz); foreach ($xml->SABIOReactionID as $rid) { parent::setCheckpoint('file'); if (isset($myfiles)) { if (!in_array($rid, $myfiles)) { continue; } } $i++; echo "{$i} / {$total} : reaction {$rid}" . PHP_EOL; $reaction_file = $idir . "reaction_" . $rid . ".owl.gz"; if (!file_exists($reaction_file) || $this->GetParameterValue('download') == 'true') { $url = $rest_uri . 'searchKineticLaws/biopax?q=SabioReactionID:' . $rid; $data = file_get_contents($url); if ($data === FALSE) { continue; } $f = new FileFactory($reaction_file, true); $f->Write($data); $f->Close(); } $buf = file_get_contents("compress.zlib://" . $reaction_file); // send for parsing $p = new BioPAX2Bio2RDF($this); $p->SetBuffer($buf)->SetBioPAXVersion(3)->SetBaseNamespace("http://sabio.h-its.org/biopax#")->SetBio2RDFNamespace("http://bio2rdf.org/sabiork:")->SetDatasetURI($this->GetDatasetURI()); $rdf = $p->Parse(); parent::getWriteFile()->Write($rdf); } parent::getWriteFile()->Close(); //generate dataset description echo "Generating dataset description... "; $source_file = (new DataResource($this))->setURI("http://sabiork.h-its.org/sabioRestWebServices/searchKineticLaws/biopax")->setTitle("SABIO-RK Biochemical Reaction Kinetics Database")->setRetrievedDate(date("Y-m-d\\TG:i:s\\Z", filemtime($odir . $ofile)))->setFormat("text/xml")->setPublisher("http://sabio.villa-bosch.de/")->setHomepage("http://sabio.villa-bosch.de/")->setRights("use-share-modify")->setRights("no-commercial")->setLicense("http://sabio.villa-bosch.de/layouts/content/termscondition.gsp")->setDataset("http://identifiers.org/sabiork.reaction/"); $prefix = parent::getPrefix(); $bVersion = parent::getParameterValue('bio2rdf_release'); $date = date("Y-m-d\\TG:i:s\\Z"); $output_file = (new DataResource($this))->setURI("http://download.bio2rdf.org/release/{$bVersion}/{$prefix}/")->setTitle("Bio2RDF v{$bVersion} RDF version of {$prefix} (generated at {$date})")->setSource($source_file->getURI())->setCreator("https://github.com/bio2rdf/bio2rdf-scripts/blob/master/sabiork/sabiork.php")->setCreateDate($date)->setHomepage("http://download.bio2rdf.org/release/{$bVersion}/{$prefix}/{$prefix}.html")->setPublisher("http://bio2rdf.org")->setRights("use-share-modify")->setRights("by-attribution")->setRights("restricted-by-source-license")->setLicense("http://creativecommons.org/licenses/by/3.0/")->setDataset(parent::getDatasetURI()); if ($gz) { $output_file->setFormat("application/gzip"); } if (strstr(parent::getParameterValue('output_format'), "nt")) { $output_file->setFormat("application/n-triples"); } else { $output_file->setFormat("application/n-quads"); } $dataset_description = $source_file->toRDF() . $output_file->toRDF(); //write dataset description to file parent::setGraphURI($graph_uri); parent::setWriteFile($odir . parent::getBio2RDFReleaseFile()); parent::getWriteFile()->write($dataset_description); parent::getWriteFile()->close(); echo "done!" . PHP_EOL; }
} else { //uncomment for debug /* $action = $_GET['action']; $filename = $_GET['filename']; $description = $_GET['description']; global $gl_loglevel; $gl_loglevel = 1; */ } if (application_userisvalid()) { $usr = application_getvaliduser(); if ($usr != null) { $df = new DirectoryFactory(); $ff = new FileFactory(); global $gl_filedir; //msg_updatefilelist //TODO delete file from db if the file does not exist in directory if ($action == msg_updatefilelist) { //$ff->updateFiles($usr->getUid()); $ff->setInvalid($usr->getUid()); $lst1 = $df->listFiles_Dir($usr->getUid(), $gl_filedir, array("gpx", "xml")); if ($lst1 != null) { for ($i = 0; $i < count($lst1); $i++) { $fn = $lst1[$i]; if (!$ff->fileExists($usr->getUid(), basename($fn))) { $path = dirname($fn) . "/"; $filename = basename($fn); $ff->createFile($usr->getUid(), $path, $filename, NULL); } else {
/** * */ function getGroupItems($aUserid, $aParentGroupId) { $items = array(); $pois = array(); $files = array(); $qry = "SELECT * FROM `tab_grp_item` WHERE ((usrid = {$aUserid}) AND (itemid = {$aParentGroupId}))"; $result = $this->executeQuery($qry); if ($result != NULL) { while ($row = mysql_fetch_row($result)) { if ($row != null) { $itemtype = strtolower($row[3]); switch ($itemtype) { case "file": $fl1 = new File(); $this->parse_ItemLink($fl1, $row, $result); array_push($files, $fl1); break; case "poi": $poi = new Poi(); $this->parse_ItemLink($poi, $row, $result); array_push($pois, $poi); break; } } } if (count($pois) > 0) { $pf = new PoiFactory(); $pf->addPois($aUserid, $pois, $items); } if (count($files) > 0) { $ff = new FileFactory(); $ff->addFiles($aUserid, $files, $items); } } return $items; }