/**
* function to retrieve the result
*/
function getVLResult($machineType,$worksheetID,$sampleID,$factor) {
global $default_resultFailureNewSampleMessage;
$result=0;
//first check if any result overrides are in place
if($worksheetID && getDetailedTableInfo2("vl_results_override","sampleID='$sampleID' and worksheetID='$worksheetID'","id")) {
$result=getDetailedTableInfo2("vl_results_override","sampleID='$sampleID' and worksheetID='$worksheetID'","result");
return $result;
} elseif(!$worksheetID && getDetailedTableInfo2("vl_results_override","sampleID='$sampleID'","id")) {
$result=getDetailedTableInfo2("vl_results_override","sampleID='$sampleID'","result");
return $result;
} else {
$rocheFailedResult=0;
$rocheFailedResult="Invalid Test Result. Insufficient sample remained to repeat the assay.";
$abbottFailedResult=0;
$abbottFailedResult="Failed.";
if($machineType=="roche") {
if(isResultFailed($machineType,($worksheetID?$worksheetID:""),$sampleID)) {
/*
* 15/Sept/14:
* Hellen (hnansumba@gmail.com, CPHL) requested that once a sample has failed more than once,
* there is insufficient sample left for a re-run hence;
* Change result to read "invalid test result. Insufficient sample remained to repeat the assay"
*/
if(getDetailedTableInfo3("vl_results_merged","lower(machine)='".strtolower($machineType)."' and vlSampleID='$sampleID'","count(id)","num")>1 &&
getDetailedTableInfo2("vl_results_merged","lower(machine)='".strtolower($machineType)."' and vlSampleID='$sampleID' order by created limit 1","resultAlphanumeric")==$rocheFailedResult) {
/*
* 21/Jan/15:
* (sewyisaac@yahoo.co.uk)
* Regarding the report where we do not have results, this is the massage to I propose.
* There is No Result Given. The Test Failed the Quality Control Criteria. We advise you send a a new sample.
*
* 23/Dec/2015
* Request from Joseph Kibirige (joseph.kibirige@yahoo.com, CPHL) and Prossy Mbabazi (pronam2000@yahoo.com, CPHL)
* when a sample has failed twice, automatically override the 2nd result with
* "There is No Result Given. The Test Failed the Quality Control Criteria. We advise you send a a new sample."
*/
logResultOverride($sampleID,$worksheetID,$default_resultFailureNewSampleMessage);
//return
return $default_resultFailureNewSampleMessage;
} else {
//return
return $rocheFailedResult;
}
} else {
$result=getDetailedTableInfo2("vl_results_roche",($worksheetID?"worksheetID='$worksheetID' and ":"")."SampleID='$sampleID' order by created desc limit 1","Result");
$result=getVLNumericResult($result,$machineType,$factor);
return $result;
}
} elseif($machineType=="abbott") {
if(isResultFailed($machineType,($worksheetID?$worksheetID:""),$sampleID)) {
/*
* 15/Sept/14:
* Hellen (hnansumba@gmail.com, CPHL) requested that once a sample has failed more than once,
* there is insufficient sample left for a re-run hence;
* Change result to read "invalid test result. Insufficient sample remained to repeat the assay"
*
* 22/Sept/14
* Adjustment made to recognize both samples as failures
*/
if(getDetailedTableInfo3("vl_results_merged","lower(machine)='".strtolower($machineType)."' and vlSampleID='$sampleID'","count(id)","num")>1 &&
getDetailedTableInfo2("vl_results_merged","lower(machine)='".strtolower($machineType)."' and vlSampleID='$sampleID' order by created limit 1","resultAlphanumeric")==$abbottFailedResult) {
/*
* 21/Jan/15:
* (sewyisaac@yahoo.co.uk)
* Regarding the report where we do not have results, this is the massage to I propose.
* There is No Result Given. The Test Failed the Quality Control Criteria. We advise you send a a new sample.
*
* 23/Dec/2015
* Request from Joseph Kibirige (joseph.kibirige@yahoo.com, CPHL) and Prossy Mbabazi (pronam2000@yahoo.com, CPHL)
* when a sample has failed twice, automatically override the 2nd result with
* "There is No Result Given. The Test Failed the Quality Control Criteria. We advise you send a a new sample."
*/
logResultOverride($sampleID,$worksheetID,$default_resultFailureNewSampleMessage);
//return
return $default_resultFailureNewSampleMessage;
} else {
//return
return $abbottFailedResult;
}
} else {
$result=getDetailedTableInfo2("vl_results_abbott",($worksheetID?"worksheetID='$worksheetID' and ":"")."sampleID='$sampleID' order by created desc limit 1","result");
$result=getVLNumericResult($result,$machineType,$factor);
return $result;
}
}
}
}
date(created)>='2015-12-27'
group by vlSampleID having num=1");
if(mysqlnumrows($query)) {
while($q=mysqlfetcharray($query)) {
//get the id
$id=0;
$id=getDetailedTableInfo2("vl_results_override","sampleID='$q[vlSampleID]' and date(created)>='2015-12-27' order by created desc limit 1","id");
//log and remove record
logDataRemoval("delete from vl_results_override where id='$id'");
mysqlquery("delete from vl_results_override where id='$id'");
}
}
*/
//task 4: a procedure to override key abbott results
$query=0;
$query=mysqlquery("select sampleID, count(id) num, max(created) dateCreated from vl_results_abbott
where
result='3119 A no clot exit detected error was encountered by the Liquid Handler.' and
sampleID not in (select sampleID from vl_results_override)
group by sampleID having num>1 order by num desc");
if(mysqlnumrows($query)) {
while($q=mysqlfetcharray($query)) {
//log result override
logResultOverride($q["sampleID"],getDetailedTableInfo2("vl_results_abbott","sampleID='$q[sampleID]' and created='$q[dateCreated]' limit 1","worksheetID"),$default_resultFailureNewSampleMessage);
}
}
//task 5: fix a result typo
mysqlquery("update vl_results_override set result='There is No Result Given. The Test Failed the Quality Control Criteria. We advise you send a new sample.' where result='There is No Result Given. The Test Failed the Quality Control Criteria. We advise you send a a new sample.'");
?>
