#!/usr/bin/php <?php // Copyright 2009 Scalable Computing Experts, Inc. // Author: Tom Clegg if ($_SERVER["argc"] != 2) { die("Usage: " . $_SERVER["argv"][0] . " genenames.txt\n"); } $fh = fopen($_SERVER["argv"][1], "r"); chdir('public_html'); require_once 'lib/setup.php'; ini_set("memory_limit", pow(2, 27)); print "Creating/updating get-evidence tables..."; evidence_create_tables(); print "\n"; $official = array(); $donottranslate = array(); print "Reading input..."; $in = 0; while (($line = fgets($fh)) !== FALSE) { if (ereg("^HGNC ID", $line)) { // header continue; } ++$in; $f = explode("\t", rtrim($line, "\n")); $canonical = $f[1]; $donottranslate[$canonical] = 1; if ($f[4] == "") { // no aliases listed continue; }
function genomes_create_tables() { evidence_create_tables(); }